Vegetation cover, topography, and low-traffic roads influence Sonoran desert tortoise (Gopherus morafkai) movement and habitat selection.

BACKGROUND: Anthropogenic activities occurring throughout the Sonoran Desert are replacing and fragmenting habitat and reducing landscape connectivity for the Sonoran desert tortoise (Gopherus morafkai). Understanding how the structure of the landscape influences tortoise habitat use and movement can help develop strategies for mitigating the impacts of these landscape alterations, which are conservation actions needed to support the species' long-term persistence. However, how natural and anthropogenic features influence fine-scale habitat use and movement of Sonoran desert tortoises remains unclear. METHODS: The goals of this study were to (1) understand how characteristics of the landscape shape tortoise habitat use and movement in order to (2) identify factors that may reduce habitat use or threaten landscape connectivity for the species by discouraging or restricting movement. We collected GPS telemetry data from 17 adult tortoises tracked for two summer monsoon seasons, when tortoises are most active, in a U.S. National Monument along the international border between Arizona, USA and Sonora, Mexico. We used Hidden Markov Models (HMMs) to assign GPS locations to an encamped or a moving state. We used the moving state data in integrated Step Selection Analyses (iSSA) to examine how range-resident Sonoran desert tortoises select habitat and respond to landscape features while moving. RESULTS: Tortoises selected to move through areas of intermediate vegetation cover and terrain ruggedness and avoided areas far from desert washes and close to low-traffic roads. Tortoises increased their speed when approaching or crossing low-traffic roads but showed no detectable response to a highway. CONCLUSION: Bare earth or high vegetation cover, flat or extremely rugged terrain, areas far from desert washes, and low-traffic roads may discourage or restrict tortoise movement. Therefore, preventing the development of roads, activities that degrade washes, and activities that thin, remove, or greatly increase vegetation cover may encourage tortoise habitat use and movement within those habitats.

Batrachochytrium dendrobatidis in the Arid and Thermally Extreme Sonoran Desert.

Batrachochytrium dendrobatidis (Bd), the causative agent of the devastating global amphibian disease chytridiomycosis, was not projected to threaten amphibians in hot and arid regions due to its sensitivity to heat and desiccation. However, Bd is being detected more frequently than ever in hot and arid regions of Australia and the USA, challenging our current understanding of the environmental tolerances of the pathogen under natural conditions. We surveyed for Bd in an extremely hot and arid portion of the Sonoran Desert, where the pathogen is not projected to occur, and related presence and prevalence of the pathogen to local environmental conditions. We collected eDNA samples from isolated desert water sites including six tinajas and 13 catchments in June and August of 2020 and swabbed a total of 281 anurans of three species (red-spotted toad Anaxyrus punctatus, Couch's spadefoot Scaphiopus couchii, and the Sonoran Desert toad Incillius alvarius) across five catchments and six tinajas from June to September of 2020. Overall, Bd occurred at 68.4% of sites, despite extreme heat and aridity routinely exceeding tolerances established in laboratory studies. Average summer maximum air and water temperatures were 40.7°C and 30.7°C, respectively, and sites received an average of just 16.9 mm of precipitation throughout the summer monsoon season. Prevalence was low (5.7%) across species and life stage. Our results demonstrate that Bd is capable of persisting and infecting amphibians beyond its projected range, indicating a need to account for higher thermal tolerances when quantifying risk of Bd presence and infection.

Desert amphibian selection of arid land breeding habitat undermines reproductive effort.

Understanding how animals select habitat is important for understanding how to better conserve those species. As droughts become more frequent and water availability declines in many systems, understanding selection of water sources becomes even more important for conservation. Tinajas and anthropogenic catchments are critical ephemeral breeding sites for Sonoran Desert anurans. Tadpoles have been documented in both water types even though anthropogenic catchments can contain very high concentrations of ammonia. We currently do not know how amphibians are selecting breeding habitat. We tested three hypotheses of habitat selection based on resource quality, resource quality and territoriality, and proximity of water site to other water sites. Male Anaxyrus punctatus called from all sites regardless of habitat quality or male quality; however, they were found more often at sites within 2 km of other sites. This suggests that male desert anurans are selecting close breeding habitat regardless of quality for breeding, indicating ammoniated sites are likely either population sinks or ecological traps. Consequently, adding anthropogenic water sites, without managing to reduce ammonia, will provide low quality habitat that could cause long-term declines in desert anuran populations.

Amphibian survival, growth and development in response to mineral nitrogen exposure and predator cues in the field: an experimental approach.

Mineral nitrogen (N) has been suggested as a potential factor causing declines in amphibian populations, especially in agricultural landscapes; however, there is a question as to whether it remains in the water column long enough to be toxic. We explored the hypothesis that mineral N can cause both lethal and sublethal toxic effects in amphibian embryos and larvae in a manipulative field experiment. We sampled 12 ponds, fertilizing half with ammonium nitrate fertilizer early in the spring, and measured hatching, survival, development, growth, and the incidence of deformities in native populations of wood frog (Rana sylvatica) and eastern tiger salamander (Ambystoma tigrinum tigrinum) embryos and larvae held in in situ enclosures. We found that higher ammonium concentrations negatively affect R. sylvatica more strongly than A. tigrinum. R. sylvatica tended to have lower survival as embryos and young tadpoles, slowed embryonic development, and an increased proportion of hatchlings with deformities at experimentally elevated ammonium. A. tigrinum did not experience significantly reduced survival, but their larval development was slowed in response to elevated ammonium and the abundance of large invertebrate predators. Variable species susceptibility, such as that shown by R sylvatica and A. tigrinum, could have large indirect effects on aquatic community structure through modification of competitive or predator-prey relationships. Ammonium and nitrate + nitrite concentrations were not correlated with other measures that might have affected amphibians, such as pH, pond area, depth, or vegetation. Our results highlight the potential importance of elevated ammonium on the growth, development and survival of amphibians, especially those that breed in surface waters receiving anthropogenic N inputs.

Ontogenic delays in effects of nitrite exposure on tiger salamanders (Ambystoma tigrinum tigrinum) and wood frogs (Rana sylvatica).

Under certain conditions, nitrite can be present in freshwater systems in quantities that are toxic to the fauna. I exposed wood frog (Rana sylvatica) and eastern tiger salamander (Ambystoma tigrinum tigrinum) embryos and young tadpoles and larvae to elevated concentrations of nitrite in chronic toxicity tests: 0, 0.3, 0.6, 1.2, 2.1, 4.6, and 6.1 mg/L NO2-N, exposing individuals as both embryos and larvae. Nitrite caused significant declines in wood frog hatching success (3.4 mg/L NO2-N, wood frog), and lower concentrations caused significant mortality during the early larval stages (4.6 mg/L NO2-N, salamander; 0.5 mg/L NO2-N, wood frog). Later tests exposing individuals to nitrite only after hatching showed that both wood frog and tiger salamander vulnerability to nitrite declined shortly after hatching. Hence, examining a single life-history stage, especially later in development, may miss critical toxic effects on organisms, causing the researcher potentially to underestimate seriously the ecological consequences of nitrite exposure.