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1.
Mol Cell Biol ; 37(2)2017 01 15.
Article in English | MEDLINE | ID: mdl-27777312

ABSTRACT

Immunoglobulin heavy chain class switch recombination (CSR) requires targeted formation of DNA double-strand breaks (DSBs) in repetitive switch region elements followed by ligation between distal breaks. The introduction of DSBs is initiated by activation-induced cytidine deaminase (AID) and requires base excision repair (BER) and mismatch repair (MMR). The BER enzyme methyl-CpG binding domain protein 4 (MBD4) has been linked to the MMR pathway through its interaction with MutL homologue 1 (MLH1). We find that when Mbd4 exons 6 to 8 are deleted in a switching B cell line, DSB formation is severely reduced and CSR frequency is impaired. Impaired CSR can be rescued by ectopic expression of Mbd4 Mbd4 deficiency yields a deficit in DNA end processing similar to that found in MutS homologue 2 (Msh2)- and Mlh1-deficient B cells. We demonstrate that microhomology-rich S-S junctions are enriched in cells in which Mbd4 is deleted. Our studies suggest that Mbd4 is a component of MMR-directed DNA end processing.


Subject(s)
Endodeoxyribonucleases/metabolism , Immunoglobulin Class Switching/genetics , Recombination, Genetic/genetics , Animals , Base Sequence , CRISPR-Cas Systems/genetics , Cell Line , DNA Breaks, Double-Stranded , Endodeoxyribonucleases/deficiency , Exons/genetics , Gene Deletion , Gene Expression Regulation , Genes, Dominant , Genetic Complementation Test , Mice, Knockout , Protein Isoforms/metabolism
2.
Curr Opin Immunol ; 39: 96-102, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26845615

ABSTRACT

Activation induced deaminase is the single B cell specific factor mediating class switch recombination and somatic hypermutation. Numerous studies have shown that AID preferentially targets Ig substrates and also attacks non-Ig substrates to create DNA damage that contributes to lymphomagenesis. AID targeting to Ig loci is linked to transcription but the mechanism governing this process has been obscure. Here we discuss research that illustrates the connection between AID targeting to DNA substrates and transcription processes to reveal rules governing the specificity of AID attack. These observations are woven together to provide a integrated view of AID function and a surprising linkage with global regulation of gene expression.


Subject(s)
B-Lymphocytes/enzymology , Cytidine Deaminase/metabolism , Animals , Cytidine Deaminase/genetics , DNA Methylation , Humans , Immunoglobulin Class Switching/physiology , Somatic Hypermutation, Immunoglobulin/physiology , Transcription, Genetic , Translocation, Genetic
3.
J Virol ; 88(5): 2658-69, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24352454

ABSTRACT

UNLABELLED: Cells that undergo apoptosis in response to chemical or physical stimuli repress inflammatory reactions, but cells that undergo nonapoptotic death in response to such stimuli lack this activity. Whether cells dying from viral infection exhibit a cell death-type modulatory effect on inflammatory reactions is unknown. We compared the effects on macrophage inflammatory responses of cells dying an apoptotic or a nonapoptotic death as a result of adenoviral infection. The results were exactly opposite to the predictions from the conventional paradigm. Cells dying by apoptosis induced by infection with an adenovirus type 5 (Ad5) E1B 19-kilodalton (E1B 19K) gene deletion mutant did not repress macrophage NF-κB activation or cytokine responses to proinflammatory stimuli, whereas cells dying a nonapoptotic death from infection with E1B 19K-competent, wild-type Ad5 repressed these macrophage inflammatory responses as well as cells undergoing classical apoptosis in response to chemical injury. The immunorepressive, E1B 19K-related cell death activity depended upon direct contact of the virally infected corpses with responder macrophages. Replacement of the viral E1B 19K gene with the mammalian Bcl-2 gene in cis restored the nonapoptotic, immunorepressive cell death activity of virally infected cells. These results define a novel function of the antiapoptotic, adenoviral E1B 19K protein that may limit local host innate immune inflammation during accumulation of virally infected cells at sites of infection and suggest that E1B 19K-deleted, replicating adenoviral vectors might induce greater inflammatory responses to virally infected cells than E1B 19K-positive vectors, because of the net effect of their loss-of-function mutation. IMPORTANCE: We observed that cells dying a nonapoptotic cell death induced by adenovirus infection repressed macrophage proinflammatory responses while cells dying by apoptosis induced by infection with an E1B 19K deletion mutant virus did not repress macrophage proinflammatory responses and enhanced some cytokine responses. Our results define a new function of the antiapoptotic, adenoviral protein E1B 19K, which we have termed "apoptotic mimicry." Our studies suggest the possibility that the presence or absence of this E1B 19K function could alter the immunological outcome of both natural and therapeutic adenoviral infections. For example, emerging, highly immunopathogenic adenovirus serotypes might induce increased host inflammatory responses as a result of altered E1B 19K function or expression. It is also possible that engineered variations in E1B 19K expression/function could be created during adenovirus vector design that would increase the therapeutic efficacy of replicating adenovirus vectors for vaccines or oncolytic viral targeting of neoplastic cells.


Subject(s)
Adenoviridae Infections/immunology , Adenoviridae/immunology , Adenovirus E1B Proteins/immunology , Apoptosis/immunology , Immunity, Innate , Adenoviridae/genetics , Adenoviridae Infections/genetics , Adenoviridae Infections/metabolism , Adenovirus E1B Proteins/genetics , Adenovirus E1B Proteins/metabolism , Animals , Cell Communication/immunology , Cell Death/immunology , Cell Line , Cytopathogenic Effect, Viral , Defective Viruses/genetics , Defective Viruses/immunology , Enzyme Activation , Gene Expression , Humans , Inflammation Mediators/metabolism , Lung/immunology , Lung/virology , Macrophages/immunology , Macrophages/metabolism , Mice , NF-kappa B/metabolism , Phenotype , Proto-Oncogene Proteins c-bcl-2/metabolism , Sequence Deletion , Transcriptional Activation
4.
PLoS One ; 8(10): e78370, 2013.
Article in English | MEDLINE | ID: mdl-24205214

ABSTRACT

Mismatch repair (MMR) safeguards against genomic instability and is required for efficient Ig class switch recombination (CSR). Methyl CpG binding domain protein 4 (MBD4) binds to MutL homologue 1 (MLH1) and controls the post-transcriptional level of several MMR proteins, including MutS homologue 2 (MSH2). We show that in WT B cells activated for CSR, MBD4 is induced and interacts with MMR proteins, thereby implying a role for MBD4 in CSR. However, CSR is in the normal range in Mbd4 deficient mice deleted for exons 2-5 despite concomitant reduction of MSH2. We show by comparison in Msh2(+/-) B cells that a two-fold reduction of MSH2 and MBD4 proteins is correlated with impaired CSR. It is therefore surprising that CSR occurs at normal frequencies in the Mbd4 deficient B cells where MSH2 is reduced. We find that a variant Mbd4 transcript spanning exons 1,6-8 is expressed in Mbd4 deficient B cells. This transcript can be ectopically expressed and produces a truncated MBD4 peptide. Thus, the 3' end of the Mbd4 locus is not silent in Mbd4 deficient B cells and may contribute to CSR. Our findings highlight a complex relationship between MBD4 and MMR proteins in B cells and a potential reconsideration of their role in CSR.


Subject(s)
DNA Mismatch Repair/genetics , Endodeoxyribonucleases/genetics , Gene Rearrangement/genetics , Immunoglobulin Class Switching/genetics , Immunoglobulins/genetics , Recombination, Genetic/genetics , Animals , B-Lymphocytes/metabolism , Cells, Cultured , DNA Repair/genetics , DNA-Binding Proteins/genetics , Exons/genetics , Mice , Mice, Inbred C57BL , MutS Homolog 2 Protein/genetics , Nuclear Proteins/genetics
6.
Eur J Immunol ; 38(1): 227-39, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18081040

ABSTRACT

Activation-induced deaminase (AID) is the master regulator of class switch recombination (CSR) and somatic hypermutation (SHM), but the mechanisms regulating AID function are obscure. The differential pattern of switch plasmid activity in three IgM(+)/AID(+) and two IgG(+)/AID(+) B cell lines prompted an analysis of global gene expression to discover the origin of these cells. Gene profiling suggested that the IgG(+)/AID(+) B cell lines derived from germinal center B cells. Analysis of SHM potential demonstrates that the IgVkappa domains are inducibly diversified at high rate during in vitro culture. The mutation spectra focused to A:T base pairs, revealing a component of the hypermutation program that occurs preferentially during phase 2 of SHM. The A:T error spectra were analyzed and were not characteristic of polymerase eta activity. A differential pattern of three consensus motifs used for A:T base substitutions was observed in WT and Poleta-, Msh2- and Msh6-deficient B cells. Strikingly, mutations in our B cell lines recapitulated the mutable motif profile for Poleta and Msh2 deficiency, respectively, and suggest that an additional pathway for the generation of A:T mutations in SHM is conserved in mouse and human.


Subject(s)
B-Lymphocytes/physiology , Gene Expression , Genes, Immunoglobulin , Mutagenesis/genetics , Somatic Hypermutation, Immunoglobulin/genetics , Animals , Base Sequence , Cell Line , Cloning, Molecular , Gene Expression Profiling , Germinal Center/immunology , Immunoglobulin Variable Region/genetics , Immunoglobulin kappa-Chains/genetics , Mice , Molecular Sequence Data , Oligonucleotide Array Sequence Analysis , Reverse Transcriptase Polymerase Chain Reaction
7.
Immunity ; 27(5): 711-22, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17980632

ABSTRACT

Molecular mechanisms underlying synapsis of activation-induced deaminase (AID)-targeted S regions during class switch recombination (CSR) are poorly understood. By using chromosome conformation capture techniques, we found that in B cells, the Emicro and 3'Ealpha enhancers were in close spatial proximity, forming a unique chromosomal loop configuration. B cell activation led to recruitment of the germline transcript (GLT) promoters to the Emicro:3'Ealpha complex in a cytokine-dependent fashion. This structure facilitated S-S synapsis because Smicro was proximal to Emicro and a downstream S region was corecruited with the targeted GLT promoter to Emicro:3'Ealpha. We propose that GLT promoter association with the Emicro:3'Ealpha complex creates an architectural scaffolding that promotes S-S synapsis during CSR and that these interactions are stabilized by AID. Thus, the S-S synaptosome is formed as a result of the self-organizing transcription system that regulates GLT expression and may serve to guard against spurious chromosomal translocations.


Subject(s)
Chromosome Pairing/genetics , Genes, Immunoglobulin Heavy Chain , Immunoglobulin Class Switching/genetics , Immunoglobulin Switch Region/genetics , Lymphocyte Activation/genetics , Regulatory Elements, Transcriptional/genetics , Animals , Cells, Cultured , Cytidine Deaminase/genetics , Cytidine Deaminase/metabolism , Flow Cytometry , Mice , Reverse Transcriptase Polymerase Chain Reaction , Transcription, Genetic
8.
Arq. bras. cardiol ; 52(5): 253-258, maio 1989. ilus
Article in Portuguese | LILACS | ID: lil-87307

ABSTRACT

Setenta e sete valvotomias foram realizadas nas primeiras 80 tentativas de tratamento da estenose mitral por valvuloplastia percutânea por duplo baläo (BMV). No grupo de 80 pacientes, 16 eram homens, a média de idade era de 44 ñ 17 anos, 12 tinham sido submetidos anteriormente a comissurotomia mitral cirúrgica, 26 apresentavam pequena insuficiência mitral. Havia importante alteraçäo valvar (imobilidade, espessamento ou calcificaçäo) ou do aparelho subvalvar em 29 pacientes. A média da pressäo "capilar" pulmonar variou de 22 ñ 6 a 12 ñ 5 mmHg (p < 0,001), o gradiente transvalvar mitral médio de 15 ñ 6 a 5 ñ 4 mmHg (p < 0,001). O índice cardíaco näo variou, a área valvar mitral (Gorlin) aumentou de 1,09 ñ 0,29 a 2,19 ñ 0,72 cm**2 (p < 0,001). Variaçöes similares foram medidas pela ecodopplercardiografia. Houve 3 tamponamentos: o primeiro num paciente no qual a BMV näo foi concluída; nos outros casos, as pressöes intracavitárias foram medidas depois da drenagem cirúrgica do pericárdio. A BMV näo foi eficaz num dos pacientes, que faleceu 3 dias após a toracotomia. Os três tamponamentos ocorreram por perfuraçäo do ventrículo esquerdo por baläo terminando em ponta. Näo houve mais tamponamento depois que foram adotados balöes terminando em "pigtail". Näo houve aumento de insuficiência mitral de mais de 1 +. Foi constatada comunicaçäo interatrial com relaçäo de fluxos pulmonar/sistêmico >= 1,5 e < 2 em 5 pacientes, e nenhum deles necessitou correçäo cirúrgica. A BMV é alternativa ao...


Subject(s)
Humans , Male , Female , Adult , Middle Aged , Catheterization , Mitral Valve Stenosis/therapy , Catheterization/adverse effects , Echocardiography, Doppler , Arterial Pressure , Cardiac Tamponade/etiology
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