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1.
R Soc Open Sci ; 8(1): 202200, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33614102

ABSTRACT

Inferring the processes underlying the emergence of observed patterns is a key challenge in theoretical ecology. Much effort has been made in the past decades to collect extensive and detailed information about the spatial distribution of tropical rainforests, as demonstrated, e.g. in the 50 ha tropical forest plot on Barro Colorado Island, Panama. These kinds of plots have been crucial to shed light on diverse qualitative features, emerging both at the single-species or the community level, like the spatial aggregation or clustering at short scales. Here, we build on the progress made in the study of the density correlation functions applied to biological systems, focusing on the importance of accurately defining the borders of the set of trees, and removing the induced biases. We also pinpoint the importance of combining the study of correlations with the scale dependence of fluctuations in density, which are linked to the well-known empirical Taylor's power law. Density correlations and fluctuations, in conjunction, provide a unique opportunity to interpret the behaviours and, possibly, to allow comparisons between data and models. We also study such quantities in models of spatial patterns and, in particular, we find that a spatially explicit neutral model generates patterns with many qualitative features in common with the empirical ones.

2.
Phys Rev E ; 101(6-1): 062606, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32688590

ABSTRACT

In recent years situations where elsewise identical particles demix when different degrees of freedom do not thermalize have become a research focus in nonequilibrium statistical mechanics. The majority of these models are formulated in the context of active particles, but the phenomenon also occurs for particles without driving. All the models studied so far share the property that they do not obey microscopic reversibility, and it may be thought that this is a necessary condition for such demixing to occur. We show here that such a demixing transition also occurs in a mixture of otherwise identical particles moving at two fixed but different speeds according to a time-reversible quasi-Newtonian dynamics. The mechanical instability underlying this behavior is generated by the lack of thermalization between the two subsystems, which is shared by all systems showing this behavior.

3.
Phys Rev E ; 99(2-1): 022604, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30934321

ABSTRACT

We study the regimes of a diluted dipolar system through Monte Carlo numerical simulations in the NVT ensemble. To accelerate the dynamics, several approximations and speed-up algorithms are proposed and tested. In particular, it turns out that "cluster move Monte Carlo" algorithm speeds-up to two decades faster than the traditional Monte Carlo, depending on temperature and density. We find simple-fluid, chain-fluid, ring-fluid, gel, and antiparallel columnar regimes, which are studied and characterized through positional, orientational, and thermodynamical observables.

4.
Phys Rev Lett ; 105(5): 055703, 2010 Jul 30.
Article in English | MEDLINE | ID: mdl-20867935

ABSTRACT

We study dynamic heterogeneities in a model glass former whose overlap with a reference configuration is constrained to a fixed value. We find that the system phase separates into regions of small and large overlap, indicating that a nonzero surface tension plays an important role in the formation of dynamical heterogeneities. We calculate an appropriate thermodynamic potential and find evidence of a Maxwell construction consistent with a spinodal decomposition of two phases. Our results suggest that even in standard, unconstrained systems dynamic heterogeneities are the expression of an ephemeral phase-separating regime ruled by a finite surface tension.

5.
Nature ; 422(6929): 289-92, 2003 Mar 20.
Article in English | MEDLINE | ID: mdl-12646916

ABSTRACT

Glasses are amorphous solids, in the sense that they display elastic behaviour. In crystalline solids, elasticity is associated with phonons, which are quantized vibrational excitations. Phonon-like excitations also exist in glasses at very high (terahertz; 10(12) Hz) frequencies; surprisingly, these persist in the supercooled liquids. A universal feature of such amorphous systems is the boson peak: the vibrational density of states has an excess compared to the Debye squared-frequency law. Here we investigate the origin of this feature by studying the spectra of inherent structures (local minima of the potential energy) in a realistic glass model. We claim that the peak is the signature of a phase transition in the space of the stationary points of the energy, from a minima-dominated phase (with phonons) at low energy to a saddle-point-dominated phase (without phonons). The boson peak moves to lower frequencies on approaching the phonon-saddle transition, and its height diverges at the critical point. Our numerical results agree with the predictions of euclidean random matrix theory on the existence of a sharp phase transition between an amorphous elastic phase and a phonon-free one.

6.
Phys Rev Lett ; 87(8): 085502, 2001 Aug 20.
Article in English | MEDLINE | ID: mdl-11497955

ABSTRACT

The topological nature of the disorder of glasses and supercooled liquids strongly affects their high-frequency dynamics. In order to understand its main features, we analytically studied a simple topologically disordered model, where the particles oscillate around randomly distributed centers, interacting through a generic pair potential. We present results of a resummation of the perturbative expansion in the inverse particle density for the dynamic structure factor and density of states. This gives accurate results for the range of densities found in real systems.

7.
Phys Rev E Stat Nonlin Soft Matter Phys ; 63(4 Pt 2): 045102, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11308895

ABSTRACT

We present a nonlocal Monte Carlo algorithm with particle swaps that greatly accelerates thermalization of soft sphere binary mixtures in the glassy region. Our first results show that thermalization of systems of hundreds of particles is achievable, and find behavior compatible with a thermodynamic glass transition.

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