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1.
EMBO J ; 43(10): 2062-2085, 2024 May.
Article in English | MEDLINE | ID: mdl-38600243

ABSTRACT

The γ-tubulin ring complex (γ-TuRC) is a structural template for de novo microtubule assembly from α/ß-tubulin units. The isolated vertebrate γ-TuRC assumes an asymmetric, open structure deviating from microtubule geometry, suggesting that γ-TuRC closure may underlie regulation of microtubule nucleation. Here, we isolate native γ-TuRC-capped microtubules from Xenopus laevis egg extract nucleated through the RanGTP-induced pathway for spindle assembly and determine their cryo-EM structure. Intriguingly, the microtubule minus end-bound γ-TuRC is only partially closed and consequently, the emanating microtubule is locally misaligned with the γ-TuRC and asymmetric. In the partially closed conformation of the γ-TuRC, the actin-containing lumenal bridge is locally destabilised, suggesting lumenal bridge modulation in microtubule nucleation. The microtubule-binding protein CAMSAP2 specifically binds the minus end of γ-TuRC-capped microtubules, indicating that the asymmetric minus end structure may underlie recruitment of microtubule-modulating factors for γ-TuRC release. Collectively, we reveal a surprisingly asymmetric microtubule minus end protofilament organisation diverging from the regular microtubule structure, with direct implications for the kinetics and regulation of nucleation and subsequent modulation of microtubules during spindle assembly.


Subject(s)
Microtubule-Associated Proteins , Microtubules , Tubulin , Xenopus Proteins , Xenopus laevis , ran GTP-Binding Protein , Microtubules/metabolism , Animals , Microtubule-Associated Proteins/metabolism , Microtubule-Associated Proteins/genetics , ran GTP-Binding Protein/metabolism , ran GTP-Binding Protein/genetics , Tubulin/metabolism , Tubulin/chemistry , Xenopus Proteins/metabolism , Xenopus Proteins/genetics , Cryoelectron Microscopy , Spindle Apparatus/metabolism
2.
Cell Tissue Res ; 393(1): 133-147, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37178194

ABSTRACT

Variations in the gene encoding filamin-A-interacting protein 1 (FILIP1) were identified to be associated with a combination of neurological and muscular symptoms. While FILIP1 was shown to regulate motility of brain ventricular zone cells, a process important for corticogenesis, the function of the protein in muscle cells has been less well characterized. The expression of FILIP1 in regenerating muscle fibres predicted a role in early muscle differentiation. Here we analysed expression and localization of FILIP1 and its binding partners filamin-C (FLNc) and microtubule plus-end-binding protein EB3 in differentiating cultured myotubes and adult skeletal muscle. Prior to the development of cross-striated myofibrils, FILIP1 is associated with microtubules and colocalizes with EB3. During further myofibril maturation its localization changes, and FILIP1 localizes to myofibrillar Z-discs together with the actin-binding protein FLNc. Forced contractions of myotubes by electrical pulse stimulation (EPS) induce focal disruptions in myofibrils and translocation of both proteins from Z-discs to these lesions, suggesting a role in induction and/or repair of these structures. The immediate proximity of tyrosylated, dynamic microtubules and EB3 to lesions implies that also these play a role in these processes. This implication is supported by the fact that in nocodazole-treated myotubes that lack functional microtubules, the number of lesions induced by EPS is significantly reduced. In summary, we here show that FILIP1 is a cytolinker protein that is associated with both microtubules and actin filaments, and might play a role in the assembly of myofibrils and their stabilization upon mechanical stress to protect them from damage.


Subject(s)
Microtubules , Myofibrils , Myofibrils/metabolism , Filamins/analysis , Filamins/genetics , Filamins/metabolism , Stress, Mechanical , Microtubules/metabolism , Cell Differentiation , Muscle, Skeletal/metabolism
3.
J Cell Biol ; 221(12)2022 12 05.
Article in English | MEDLINE | ID: mdl-36214847

ABSTRACT

Centrosomes play a crucial role during immune cell interactions and initiation of the immune response. In proliferating cells, centrosome numbers are tightly controlled and generally limited to one in G1 and two prior to mitosis. Defects in regulating centrosome numbers have been associated with cell transformation and tumorigenesis. Here, we report the emergence of extra centrosomes in leukocytes during immune activation. Upon antigen encounter, dendritic cells pass through incomplete mitosis and arrest in the subsequent G1 phase leading to tetraploid cells with accumulated centrosomes. In addition, cell stimulation increases expression of polo-like kinase 2, resulting in diploid cells with two centrosomes in G1-arrested cells. During cell migration, centrosomes tightly cluster and act as functional microtubule-organizing centers allowing for increased persistent locomotion along gradients of chemotactic cues. Moreover, dendritic cells with extra centrosomes display enhanced secretion of inflammatory cytokines and optimized T cell responses. Together, these results demonstrate a previously unappreciated role of extra centrosomes for regular cell and tissue homeostasis.


Subject(s)
Centrosome , Dendritic Cells , Cell Cycle Checkpoints , Cell Movement , Centrosome/metabolism , Chemotaxis , Cytokines/metabolism , Dendritic Cells/metabolism , Humans , Microtubule-Organizing Center , Mitosis , Protein Serine-Threonine Kinases/metabolism , T-Lymphocytes/metabolism
4.
Nucleic Acids Res ; 50(17): 9966-9983, 2022 09 23.
Article in English | MEDLINE | ID: mdl-36107771

ABSTRACT

RNA editing processes are strikingly different in animals and plants. Up to thousands of specific cytidines are converted into uridines in plant chloroplasts and mitochondria whereas up to millions of adenosines are converted into inosines in animal nucleo-cytosolic RNAs. It is unknown whether these two different RNA editing machineries are mutually incompatible. RNA-binding pentatricopeptide repeat (PPR) proteins are the key factors of plant organelle cytidine-to-uridine RNA editing. The complete absence of PPR mediated editing of cytosolic RNAs might be due to a yet unknown barrier that prevents its activity in the cytosol. Here, we transferred two plant mitochondrial PPR-type editing factors into human cell lines to explore whether they could operate in the nucleo-cytosolic environment. PPR56 and PPR65 not only faithfully edited their native, co-transcribed targets but also different sets of off-targets in the human background transcriptome. More than 900 of such off-targets with editing efficiencies up to 91%, largely explained by known PPR-RNA binding properties, were identified for PPR56. Engineering two crucial amino acid positions in its PPR array led to predictable shifts in target recognition. We conclude that plant PPR editing factors can operate in the entirely different genetic environment of the human nucleo-cytosol and can be intentionally re-engineered towards new targets.


Subject(s)
Plant Proteins , RNA-Binding Proteins , Amino Acids , Cytidine , Humans , Plant Proteins/genetics , RNA/genetics , RNA, Mitochondrial/genetics , RNA, Plant/genetics , RNA-Binding Proteins/genetics , RNA-Binding Proteins/metabolism , Uridine/genetics
5.
Cells ; 11(7)2022 04 01.
Article in English | MEDLINE | ID: mdl-35406752

ABSTRACT

Centrosomes represent main microtubule organizing centers (MTOCs) in animal cells. Their duplication in S-phase enables the establishment of two MTOCs in M-phase that define the poles of the spindle and ensure equal distribution of chromosomes and centrosomes to the two daughter cells. While key functions of many centrosomal proteins have been addressed in RNAi experiments and chronic knockdown, knockout experiments with complete loss of function in all cells enable quantitative analysis of cellular phenotypes at all cell-cycle stages. Here, we show that the centriolar satellite proteins SSX2IP and WDR8 and the centriolar protein CEP135 form a complex before centrosome assembly in vertebrate oocytes and further functionally interact in somatic cells with established centrosomes. We present stable knockouts of SSX2IP, WDR8, and CEP135 in human cells. While loss of SSX2IP and WDR8 are compensated for, cep135 knockout cells display compromised PCM recruitment, reduced MTOC function, and premature centrosome splitting with imbalanced PCMs. Defective cep135 knockout centrosomes, however, manage to establish balanced spindle poles, allowing unperturbed mitosis and regular cell proliferation. Our data show essential functions of CEP135 in interphase MTOCs and demonstrate that loss of individual functions of SSX2IP, WDR8, and CEP135 are fully compensated for in mitosis.


Subject(s)
Carrier Proteins , Cell Cycle Proteins , Centrioles , Centrosome , Microtubule-Associated Proteins , Animals , Carrier Proteins/genetics , Carrier Proteins/metabolism , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Centrioles/metabolism , Centrosome/metabolism , Humans , Microtubule-Associated Proteins/genetics , Microtubule-Associated Proteins/metabolism , Mitosis , Oocytes/metabolism , Proteins/genetics , Proteins/metabolism
6.
Cell Rep ; 35(12): 109277, 2021 06 22.
Article in English | MEDLINE | ID: mdl-34161763

ABSTRACT

The activity of the SMN complex in promoting the assembly of pre-mRNA processing UsnRNPs correlates with condensation of the complex in nuclear Cajal bodies. While mechanistic details of its activity have been elucidated, the molecular basis for condensation remains unclear. High SMN complex phosphorylation suggests extensive regulation. Here, we report on systematic siRNA-based screening for modulators of the capacity of SMN to condense in Cajal bodies and identify mTOR and ribosomal protein S6 kinase ß-1 as key regulators. Proteomic analysis reveals TOR-dependent phosphorylations in SMN complex subunits. Using stably expressed or optogenetically controlled phospho mutants, we demonstrate that serine 49 and 63 phosphorylation of human SMN controls the capacity of the complex to condense in Cajal bodies via liquid-liquid phase separation. Our findings link SMN complex condensation and UsnRNP biogenesis to cellular energy levels and suggest modulation of TOR signaling as a rational concept for therapy of the SMN-linked neuromuscular disorder spinal muscular atrophy.


Subject(s)
Ribonucleoproteins, Small Nuclear/biosynthesis , SMN Complex Proteins/metabolism , Signal Transduction , TOR Serine-Threonine Kinases/metabolism , Cell Nucleus/metabolism , HeLa Cells , Humans , Mutation/genetics , Phosphorylation , Phosphoserine/metabolism , Protein Multimerization , Proteomics , Reproducibility of Results , Ribonucleoproteins, Small Nuclear/metabolism , Ribosomal Protein S6 Kinases, 70-kDa/metabolism
7.
Nature ; 578(7795): 467-471, 2020 02.
Article in English | MEDLINE | ID: mdl-31856152

ABSTRACT

Microtubules are dynamic polymers of α- and ß-tubulin and have crucial roles in cell signalling, cell migration, intracellular transport and chromosome segregation1. They assemble de novo from αß-tubulin dimers in an essential process termed microtubule nucleation. Complexes that contain the protein γ-tubulin serve as structural templates for the microtubule nucleation reaction2. In vertebrates, microtubules are nucleated by the 2.2-megadalton γ-tubulin ring complex (γ-TuRC), which comprises γ-tubulin, five related γ-tubulin complex proteins (GCP2-GCP6) and additional factors3. GCP6 is unique among the GCP proteins because it carries an extended insertion domain of unknown function. Our understanding of microtubule formation in cells and tissues is limited by a lack of high-resolution structural information on the γ-TuRC. Here we present the cryo-electron microscopy structure of γ-TuRC from Xenopus laevis at 4.8 Å global resolution, and identify a 14-spoked arrangement of GCP proteins and γ-tubulins in a partially flexible open left-handed spiral with a uniform sequence of GCP variants. By forming specific interactions with other GCP proteins, the GCP6-specific insertion domain acts as a scaffold for the assembly of the γ-TuRC. Unexpectedly, we identify actin as a bona fide structural component of the γ-TuRC with functional relevance in microtubule nucleation. The spiral geometry of γ-TuRC is suboptimal for microtubule nucleation and a controlled conformational rearrangement of the γ-TuRC is required for its activation. Collectively, our cryo-electron microscopy reconstructions provide detailed insights into the molecular organization, assembly and activation mechanism of vertebrate γ-TuRC, and will serve as a framework for the mechanistic understanding of fundamental biological processes associated with microtubule nucleation, such as meiotic and mitotic spindle formation and centriole biogenesis4.


Subject(s)
Cryoelectron Microscopy , Microtubule-Associated Proteins/chemistry , Microtubule-Associated Proteins/ultrastructure , Microtubules/metabolism , Multiprotein Complexes/chemistry , Multiprotein Complexes/ultrastructure , Xenopus , Actins/chemistry , Actins/metabolism , Actins/ultrastructure , Animals , Microtubule-Associated Proteins/metabolism , Microtubules/chemistry , Models, Molecular , Tubulin/chemistry , Tubulin/metabolism , Tubulin/ultrastructure
8.
Life Sci Alliance ; 2(1)2019 02.
Article in English | MEDLINE | ID: mdl-30718377

ABSTRACT

RecQ-like helicase 4 (RECQL4) is mutated in patients suffering from the Rothmund-Thomson syndrome, a genetic disease characterized by premature aging, skeletal malformations, and high cancer susceptibility. Known roles of RECQL4 in DNA replication and repair provide a possible explanation of chromosome instability observed in patient cells. Here, we demonstrate that RECQL4 is a microtubule-associated protein (MAP) localizing to the mitotic spindle. RECQL4 depletion in M-phase-arrested frog egg extracts does not affect spindle assembly per se, but interferes with maintaining chromosome alignment at the metaphase plate. Low doses of nocodazole depolymerize RECQL4-depleted spindles more easily, suggesting abnormal microtubule-kinetochore interaction. Surprisingly, inter-kinetochore distance of sister chromatids is larger in depleted extracts and patient fibroblasts. Consistent with a role to maintain stable chromosome alignment, RECQL4 down-regulation in HeLa cells causes chromosome misalignment and delays mitotic progression. Importantly, these chromosome alignment defects are independent from RECQL4's reported roles in DNA replication and damage repair. Our data elucidate a novel function of RECQL4 in mitosis, and defects in mitotic chromosome alignment might be a contributing factor for the Rothmund-Thomson syndrome.


Subject(s)
Metaphase/genetics , Microtubule-Associated Proteins/genetics , RecQ Helicases/genetics , RecQ Helicases/metabolism , Rothmund-Thomson Syndrome/enzymology , Animals , Chromatin/metabolism , Chromosomal Instability/genetics , Chromosome Segregation/genetics , Codon, Nonsense/genetics , DNA Repair , DNA Replication , Frameshift Mutation/genetics , HEK293 Cells , HeLa Cells , Humans , Kinetochores/metabolism , Microtubules/metabolism , Ovum/enzymology , Spindle Apparatus/enzymology , Xenopus/genetics
9.
EMBO Rep ; 20(1)2019 01.
Article in English | MEDLINE | ID: mdl-30538118

ABSTRACT

The G2/M checkpoint coordinates DNA replication with mitosis and thereby prevents chromosome segregation in the presence of unreplicated or damaged DNA Here, we show that the RNA-binding protein TIAR is essential for the G2/M checkpoint and that TIAR accumulates in nuclear foci in late G2 and prophase in cells suffering from replication stress. These foci, which we named G2/M transition granules (GMGs), occur at low levels in normally cycling cells and are strongly induced by replication stress. In addition to replication stress response proteins, GMGs contain factors involved in RNA metabolism as well as CDK1. Depletion of TIAR accelerates mitotic entry and leads to chromosomal instability in response to replication stress, in a manner that can be alleviated by the concomitant depletion of Cdc25B or inhibition of CDK1. Since TIAR retains CDK1 in GMGs and attenuates CDK1 activity, we propose that the assembly of GMGs may represent a so far unrecognized mechanism that contributes to the activation of the G2/M checkpoint in mammalian cells.


Subject(s)
CDC2 Protein Kinase/genetics , G2 Phase Cell Cycle Checkpoints/genetics , RNA-Binding Proteins/genetics , cdc25 Phosphatases/genetics , Cell Cycle/genetics , Chromosome Segregation/genetics , DNA Damage/genetics , DNA Replication/genetics , HeLa Cells , Humans , Mitosis/genetics , Phosphorylation
10.
Cells ; 7(7)2018 Jul 10.
Article in English | MEDLINE | ID: mdl-29996518

ABSTRACT

Sexual reproduction requires the generation of gametes, which are highly specialised for fertilisation. Female reproductive cells, oocytes, grow up to large sizes when they accumulate energy stocks and store proteins as well as mRNAs to enable rapid cell divisions after fertilisation. At the same time, metazoan oocytes eliminate their centrosomes, i.e., major microtubule-organizing centres (MTOCs), during or right after the long growth phases. Centrosome elimination poses two key questions: first, how can the centrosome be re-established after fertilisation? In general, metazoan oocytes exploit sperm components, i.e., the basal body of the sperm flagellum, as a platform to reinitiate centrosome production. Second, how do most metazoan oocytes manage to build up meiotic spindles without centrosomes? Oocytes have evolved mechanisms to assemble bipolar spindles solely around their chromosomes without the guidance of pre-formed MTOCs. Female animal meiosis involves microtubule nucleation and organisation into bipolar microtubule arrays in regulated self-assembly under the control of the Ran system and nuclear transport receptors. This review summarises our current understanding of the molecular mechanism underlying self-assembly of meiotic spindles, its spatio-temporal regulation, and the key players governing this process in animal oocytes.

11.
Eur J Hum Genet ; 26(10): 1502-1511, 2018 10.
Article in English | MEDLINE | ID: mdl-29899372

ABSTRACT

PTPN23 encodes a ubiquitously expressed non-receptor type, catalytically inactive protein-tyrosine phosphatase found in all cells including neurons. Recently, we have identified PTPN23 in a cellular screen for the systematic identification of novel regulators of survival motor neuron (SMN) function in the assembly of splicing factors (Uridine-rich small nuclear ribonucleoproteins, UsnRNPs). Based on three families, recessive PTPN23 variants have been associated with human disease tentatively, without functional studies. Here, we describe a pediatric proband with severe developmental delay, epilepsy, cortical blindness, hypomyelination and brain atrophy on MRI. Whole exome sequencing and family study showed two novel PTPN23 variants, c.1902C>G (p.(Asn634Lys)) and c.2974delC (p.(Leu992Tyrfs*168)), in compound heterozygous state, which are predicted in silico to be damaging. When studying patient's fibroblasts we found similar expression of SMN but a dramatic reduction of cells displaying SMN accumulation in Cajal bodies (CB). SMN strongly accumulated in CB in more than 50% of unrelated control cell fibroblasts as well as in fibroblasts from the parent carrying only the c.2974delC (p.(Leu992Tyrfs*168)) variant (predicted to cause loss-of-function). In contrast, only 22% of cells showed respective SMN accumulations in patient fibroblasts (p = 1.9-2.5 × 10-7) while showing a higher level of nucleoplasmic SMN. Furthermore, the remaining accumulations in patient cells displayed weaker SMN signals than control or heterozygous wt/c.2974delC (p.(Leu992Tyrfs*168)) fibroblasts. Our report provides the first description of the clinical phenotype of recessive PTPN23 variants with pathogenicity substantiated by a functional study.


Subject(s)
Atrophy/genetics , Exome Sequencing , Protein Tyrosine Phosphatases, Non-Receptor/genetics , Spasms, Infantile/genetics , Atrophy/physiopathology , Brain/physiopathology , Cell Nucleus/genetics , Child , Female , Fibroblasts/metabolism , Humans , Male , Motor Neurons/metabolism , Motor Neurons/pathology , SMN Complex Proteins/genetics
12.
Bioessays ; 40(4): e1700135, 2018 04.
Article in English | MEDLINE | ID: mdl-29522658

ABSTRACT

Centrosomes are the main microtubule organizing centers in animal cells. In particular during embryogenesis, they ensure faithful spindle formation and proper cell divisions. As metazoan centrosomes are eliminated during oogenesis, they have to be reassembled upon fertilization. Most metazoans use the sperm centrioles as templates for new centrosome biogenesis while the egg's cytoplasm re-prepares all components for on-going centrosome duplication in rapidly dividing embryonic cells. We discuss our knowledge and the experimental challenges to analyze zygotic centrosome reformation, which requires genetic experiments to enable scrutinizing respective male and female contributions. Male and female knockout animals and mRNA injection to mimic maternal expression of centrosomal proteins could point a way to the systematic molecular dissection of the process. The most recent data suggest that timely expression of centrosome components in oocytes is the key to zygotic centrosome reformation that uses male sperm as coordinators for de novo centrosome production.


Subject(s)
Centrioles/metabolism , Centrosome/metabolism , Microtubule-Organizing Center/metabolism , Spermatozoa/metabolism , Animals , Female , Male , Oocytes/metabolism
13.
Chromosoma ; 126(5): 577-593, 2017 10.
Article in English | MEDLINE | ID: mdl-28766049

ABSTRACT

Macromolecular complexes composed of proteins or proteins and nucleic acids rather than individual macromolecules mediate many cellular activities. Maintenance of these activities is essential for cell viability and requires the coordinated production of the individual complex components as well as their faithful incorporation into functional entities. Failure of complex assembly may have fatal consequences and can cause severe diseases. While many macromolecular complexes can form spontaneously in vitro, they often require aid from assembly factors including assembly chaperones in the crowded cellular environment. The assembly of RNA protein complexes implicated in the maturation of pre-mRNAs (termed UsnRNPs) has proven to be a paradigm to understand the action of assembly factors and chaperones. UsnRNPs are assembled by factors united in protein arginine methyltransferase 5 (PRMT5)- and survival motor neuron (SMN)-complexes, which act sequentially in the UsnRNP production line. While the PRMT5-complex pre-arranges specific sets of proteins into stable intermediates, the SMN complex displaces assembly factors from these intermediates and unites them with UsnRNA to form the assembled RNP. Despite advanced mechanistic understanding of UsnRNP assembly, our knowledge of regulatory features of this essential and ubiquitous cellular function remains remarkably incomplete. One may argue that the process operates as a default biosynthesis pathway and does not require sophisticated regulatory cues. Simple theoretical considerations and a number of experimental data, however, indicate that regulation of UsnRNP assembly most likely happens at multiple levels. This review will not only summarize how individual components of this assembly line act mechanistically but also why, how, and when the UsnRNP workflow might be regulated by means of posttranslational modification in response to cellular signaling cues.


Subject(s)
RNA Precursors/metabolism , RNA Processing, Post-Transcriptional , RNA, Messenger/metabolism , RNA, Small Nuclear/metabolism , Spliceosomes/metabolism , Animals , Gene Expression Regulation , Humans , RNA, Small Nuclear/genetics , Signal Transduction
14.
Nat Commun ; 8: 14090, 2017 01 18.
Article in English | MEDLINE | ID: mdl-28098238

ABSTRACT

The assembly of the first centrosome occurs upon fertilisation when male centrioles recruit pericentriolar material (PCM) from the egg cytoplasm. The mechanisms underlying the proper assembly of centrosomes during early embryogenesis remain obscure. We identify Wdr8 as a novel maternally essential protein that is required for centrosome assembly during embryonic mitoses of medaka (Oryzias latipes). By CRISPR-Cas9-mediated knockout, maternal/zygotic Wdr8-null (m/zWdr8-/-) blastomeres exhibit severe defects in centrosome structure that lead to asymmetric division, multipolar mitotic spindles and chromosome alignment errors. Via its WD40 domains, Wdr8 interacts with the centriolar satellite protein SSX2IP. Combining targeted gene knockout and in vivo reconstitution of the maternally essential Wdr8-SSX2IP complex reveals an essential link between maternal centrosome proteins and the stability of the zygotic genome for accurate vertebrate embryogenesis. Our approach provides a way of distinguishing maternal from paternal effects in early embryos and should contribute to understanding molecular defects in human infertility.


Subject(s)
Centrosome/metabolism , Fish Proteins/metabolism , Mitosis , Oryzias/embryology , Oryzias/genetics , Animals , Blastomeres/metabolism , Centrioles/metabolism , Female , Fish Proteins/genetics , Male , Maternal Inheritance , Oryzias/metabolism , Zygote/cytology , Zygote/metabolism
15.
J Cell Sci ; 129(3): 621-36, 2016 Feb 01.
Article in English | MEDLINE | ID: mdl-26675238

ABSTRACT

Ciliogenesis initiates at the mother centriole through a series of events that include membrane docking, displacement of cilia-inhibitory proteins and axoneme elongation. Centriolar proteins, in particular at distal and subdistal appendages, carry out these functions. Recently, cytoplasmic complexes named centriolar satellites have also been shown to promote ciliogenesis. Little is known about the functional and molecular relationship between appendage proteins, satellites and cilia biogenesis. Here, we identified the WD-repeat protein 8 (WDR8, also known as WRAP73) as a satellite and centriolar component. We show that WDR8 interacts with the satellite proteins SSX2IP and PCM1 as well as the centriolar proximal end component Cep135. Cep135 is required for the recruitment of WDR8 to centrioles. Depletion experiments revealed that WDR8 and Cep135 have strongly overlapping functions in ciliogenesis. Both are indispensable for ciliary vesicle docking to the mother centriole and for unlocking the distal end of the mother centriole from the ciliary inhibitory complex CP110-Cep97. Our data thus point to an important function of centriolar proximal end proteins in ciliary membrane biogenesis, and establish WDR8 and Cep135 as two factors that are essential for the initial steps of ciliation.


Subject(s)
Centrioles/metabolism , Cilia/metabolism , Cilia/physiology , Morphogenesis/physiology , Proteins/metabolism , Animals , Autoantigens/metabolism , Axoneme/metabolism , Axoneme/physiology , Carrier Proteins/metabolism , Cell Cycle Proteins/metabolism , Cell Line , Centrioles/physiology , HEK293 Cells , Humans , Mice , Microtubule-Associated Proteins/metabolism , NIH 3T3 Cells , Nuclear Proteins/metabolism , Phosphoproteins/metabolism
16.
Mol Biol Cell ; 26(2): 161-71, 2015 Jan 15.
Article in English | MEDLINE | ID: mdl-25392300

ABSTRACT

The survival motor neuron (SMN) complex fulfils essential functions in the assembly of snRNPs, which are key components in the splicing of pre-mRNAs. Little is known about the regulation of SMN complex activity by posttranslational modification despite its complicated phosphorylation pattern. Several phosphatases had been implicated in the regulation of SMN, including the nuclear phosphatases PPM1G and PP1γ. Here we systematically screened all human phosphatase gene products for a regulatory role in the SMN complex. We used the accumulation of SMN in Cajal bodies of intact proliferating cells, which actively assemble snRNPs, as a readout for unperturbed SMN complex function. Knockdown of 29 protein phosphatases interfered with SMN accumulation in Cajal bodies, suggesting impaired SMN complex function, among those the catalytically inactive, non-receptor-type tyrosine phosphatase PTPN23/HD-PTP. Knockdown of PTPN23 also led to changes in the phosphorylation pattern of SMN without affecting the assembly of the SMN complex. We further show interaction between SMN and PTPN23 and document that PTPN23, like SMN, shuttles between nucleus and cytoplasm. Our data provide the first comprehensive screen for SMN complex regulators and establish a novel regulatory function of PTPN23 in maintaining a highly phosphorylated state of SMN, which is important for its proper function in snRNP assembly.


Subject(s)
Coiled Bodies/metabolism , Protein Tyrosine Phosphatases, Non-Receptor/metabolism , Ribonucleoproteins, Small Nuclear/metabolism , SMN Complex Proteins/metabolism , Biocatalysis , Blotting, Western , Cell Nucleus/metabolism , Cytoplasm/metabolism , Electrophoresis, Gel, Two-Dimensional , HeLa Cells , Humans , Microscopy, Confocal , Phosphorylation , Protein Transport , Protein Tyrosine Phosphatases/genetics , Protein Tyrosine Phosphatases/metabolism , Protein Tyrosine Phosphatases, Non-Receptor/genetics , RNA Interference
17.
J Cell Sci ; 127(Pt 23): 5007-13, 2014 Dec 01.
Article in English | MEDLINE | ID: mdl-25300793

ABSTRACT

Summary Understanding the molecular basis for proper cell division requires a detailed functional analysis of microtubule (MT)-associated proteins. MT-associated protein 1S (MAP1S), the most ubiquitously expressed MAP1 family member, is required for accurate cell division. Here, using quantitative analysis of MT plus-end tracking, we show that MAP1S knockdown alters MT dynamics throughout the cell cycle. Surprisingly, MAP1S downregulation results in faster growing, yet short-lived, MTs in all cell cycle stages and in a global loss of MT acetylation. These aberrations correlate with severe defects in the final stages of cell division. In monopolar cytokinesis assays, we demonstrate that MAP1S guides MT-dependent initiation of cytokinesis. Our data underline the key role of MAP1S as a global regulator of MT stability and demonstrate a new primary function of MAP1S to regulate MT dynamics at the onset of cytokinesis.


Subject(s)
Cell Cycle , Cytokinesis , Microtubule-Associated Proteins/metabolism , Microtubules/metabolism , Acetylation , Gene Knockdown Techniques , HeLa Cells , Humans , Microscopy, Fluorescence , Microscopy, Video , Microtubule-Associated Proteins/genetics , Protein Processing, Post-Translational , RNA Interference , Time Factors , Time-Lapse Imaging , Transfection
18.
Eur J Cell Biol ; 93(3): 106-17, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24602413

ABSTRACT

The survival motor neuron (SMN) complex is a macromolecular machine comprising 9 core proteins: SMN, Gemins2-8 and unrip in vertebrates. It performs tasks in RNA metabolism including the cytoplasmic assembly of spliceosomal small nuclear ribonucleoprotein particles (snRNPs). The SMN complex also localizes to the nucleus, where it accumulates in Cajal Bodies (CB) and may function in transcription and/or pre-mRNA splicing. The SMN complex is subject to extensive phosphorylation. Detailed understanding of SMN complex regulation necessitates a comprehensive analysis of these post-translational modifications. Here, we report on the first comprehensive phosphoproteome analysis of the intact human SMN complex, which identify 48 serine/threonine phosphosites in the complex. We find that 7 out of 9 SMN components of the intact complex are phosphoproteins and confidently place 29 phosphorylation sites, 12 of them in SMN itself. By the generation of multi non-phosphorylatable or phosphomimetic variants of SMN, respectively, we address to which extent phosphorylation regulates SMN complex function and localization. Both phosphomimetic and non-phosphorylatable variants assemble into intact SMN complexes and can compensate the loss of endogenous SMN in snRNP assembly at least to some extent. However, they partially or completely fail to target to nuclear Cajal bodies. Moreover, using a mutant of SMN, which cannot be phosphorylated on previously reported tyrosine residues, we provide first evidence that this PTM regulates SMN localization and nuclear accumulation. Our data suggest complex regulatory cues mediated by phosphorylation of serine/threonine and tyrosine residues, which control the subcellular localization of the SMN complex and its accumulation in nuclear CB.


Subject(s)
SMN Complex Proteins/metabolism , Amino Acid Sequence , Coiled Bodies/metabolism , HeLa Cells , Humans , Molecular Sequence Data , Mutation , Phosphoproteins/chemistry , Phosphoproteins/genetics , Phosphoproteins/metabolism , Phosphorylation , Proteome/metabolism , Ribonucleoproteins, Small Nuclear/metabolism , SMN Complex Proteins/chemistry , SMN Complex Proteins/genetics , Serine/chemistry , Serine/metabolism , Threonine/chemistry , Threonine/metabolism , Tyrosine/chemistry , Tyrosine/genetics , Tyrosine/metabolism
19.
Cell Mol Life Sci ; 71(16): 3027-47, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24556998

ABSTRACT

For more than 15 years, TPX2 has been studied as a factor critical for mitosis and spindle assembly. These functions of TPX2 are attributed to its Ran-regulated microtubule-associated protein properties and to its control of the Aurora A kinase. Overexpressed in cancers, TPX2 is being established as marker for the diagnosis and prognosis of malignancies. During interphase, TPX2 resides preferentially in the nucleus where its function had remained elusive until recently. The latest finding that TPX2 plays a role in amplification of the DNA damage response, combined with the characterization of TPX2 knockout mice, open new perspectives to understand the biology of this protein. This review provides an historic overview of the discovery of TPX2 and summarizes its cytoskeletal and signaling roles with relevance to cancer therapies. Finally, the review aims to reconcile discrepancies between the experimental and pathological effects of TPX2 overexpression and advances new roles for compartmentalized TPX2.


Subject(s)
Cell Cycle Proteins/metabolism , DNA Damage , Microtubule-Associated Proteins/metabolism , Neoplasms/metabolism , Nuclear Proteins/metabolism , Spindle Apparatus/metabolism , Animals , Cell Cycle , Cell Cycle Proteins/analysis , Cell Cycle Proteins/genetics , Gene Expression Regulation, Neoplastic , Humans , Microtubule-Associated Proteins/analysis , Microtubule-Associated Proteins/genetics , Mitosis , Neoplasms/genetics , Neoplasms/pathology , Neoplasms/therapy , Nuclear Proteins/analysis , Nuclear Proteins/genetics
20.
Nat Commun ; 5: 3270, 2014.
Article in English | MEDLINE | ID: mdl-24509916

ABSTRACT

The GTP-bound form of the Ran GTPase (RanGTP), produced around chromosomes, drives nuclear envelope and nuclear pore complex (NPC) re-assembly after mitosis. The nucleoporin MEL-28/ELYS binds chromatin in a RanGTP-regulated manner and acts to seed NPC assembly. Here we show that, upon mitotic NPC disassembly, MEL-28 dissociates from chromatin and re-localizes to spindle microtubules and kinetochores. MEL-28 directly binds microtubules in a RanGTP-regulated way via its C-terminal chromatin-binding domain. Using Xenopus egg extracts, we demonstrate that MEL-28 is essential for RanGTP-dependent microtubule nucleation and spindle assembly, independent of its function in NPC assembly. Specifically, MEL-28 interacts with the γ-tubulin ring complex and recruits it to microtubule nucleation sites. Our data identify MEL-28 as a RanGTP target that functions throughout the cell cycle. Its cell cycle-dependent binding to chromatin or microtubules discriminates MEL-28 functions in interphase and mitosis, and ensures that spindle assembly occurs only after NPC breakdown.


Subject(s)
DNA-Binding Proteins/metabolism , Nuclear Pore/metabolism , Spindle Apparatus/metabolism , Transcription Factors/metabolism , Tubulin/metabolism , Xenopus Proteins/metabolism , ran GTP-Binding Protein/metabolism , Animals , Chromatin/metabolism , HeLa Cells , Humans , Microtubule-Associated Proteins/metabolism , Mitosis , Xenopus
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