Comprehensive Characterization of Oils and Fats of Six Species from the Colombian Amazon Region with Industrial Potential.

The Colombian Amazon is a megadiverse region with high potential for commercial use in the pharmaceutical, food, and cosmetic industries, constantly expanding and looking for new alternatives from natural resources; unfortunately, few characterization reports of its profitable non-timber species in Colombia have been conducted. This work aimed to perform a comprehensive analysis of traditionally used species: Carapa guianensis (Andiroba), Euterpe precatoria (Asai), Mauritia flexuosa (Miriti), Astrocaryum murumuru (Murumuru), Plukenetia volubilis (Sacha Inchi), and Caryodendron orinocense H.Karst (Cacay). For this purpose, oil and fat quality indices, phytosterol, carotenoid, tocopherol, and tocotrienol content, as well as density and refractive index, were measured to establish their quality level. Multivariate analysis showed four groups of samples; such differences were mainly due to the composition rather than quality indices and physical properties, especially the content of saturated and unsaturated fatty acids. All species reported a precise composition, which makes them noninterchangeable, and Miriti oil arose as the most versatile ingredient for the industry. The Colombian Amazon region is a promising source of quality raw material, especially for oils/fats and unsaturated fatty acids; this resulted in the most interest for pharmaceutical, food, and cosmetic purposes.

Ontogenetic Changes in the Chemical Profiles of Piper Species.

The chemical composition of seedlings and adult plants of several Piper species were analyzed by 1H NMR spectroscopy combined with principal component analysis (PCA) and HPLC-DAD, HPLC-HRESIMS and GC-MS data. The chromatographic profile of crude extracts from leaves of Piper species showed remarkable differences between seedlings and adult plants. Adult leaves of P. regnellii accumulate dihydrobenzofuran neolignans, P. solmsianum contain tetrahydrofuran lignans, and prenylated benzoic acids are found in adult leaves of P. hemmendorffii and P. caldense. Seedlings produced an entirely different collection of compounds. Piper gaudichaudianum and P. solmsianum seedlings contain the phenylpropanoid dillapiole. Piper regnellii and P. hemmendorffii produce another phenylpropanoid, apiol, while isoasarone is found in P. caldense. Piper richadiaefolium and P. permucronatum contain dibenzylbutyrolactones lignans or flavonoids in adult leaves. Seedlings of P. richardiaefolium produce multiple amides, while P. permucronatum seedlings contain a new long chain ester. Piper tuberculatum, P. reticulatum and P. amalago produce amides, and their chemistry changes less during ontogeny. The chemical variation we documented opens questions about changes in herbivore pressure across ontogeny.

Insights into the interaction and binding mode of a set of antifungal azoles as inhibitors of potential fungal enzyme-based targets.

Azole-containing compounds are a kind of chemical entities of natural and synthetic origin having a wide-range of activities. They are therefore considered as important moieties for fungicide development, mostly due to the possible action on several enzyme-based targets. As part of our research on fungicidal agents, the relationship between the ligand-enzyme affinities of several synthetic azole-containing compounds against a set of fungal enzyme-based targets was in silico evaluated through molecular docking. The affinity values of the test compounds were mostly higher than those of the respective test controls. Binding modes between enzymes and test compounds were firstly investigated through Vina scores and ligand-residue interactions. Furthermore, statistically relationships among docking scores were successfully found by multivariate analysis. They were mostly correlated with reported MIC80 values, so it denoted an evident discrimination of the test compounds. Strong electron withdrawing groups on phenylacrylamide moiety were responsible for establishing stronger complexes with the enzyme targets, being trichodiene synthase and α-L-fucosidase the most important ones. Moreover, stability of a set of representative protein/ligand complexes was also analyzed by 10 ns molecular dynamics simulations (MD). Significant differences into the MD runs were detected and directly correlated to docking performances. Finally, docking affinity scores and HOMO-LUMO energy gaps resulted well predicted by comparative molecular field analysis (CoMFA) models, demonstrating the structure type is particularly associated with those calculated properties and these results were thus consistent with the respective validation parameters.

Molecular docking study of naturallyoccurring compounds as inhibitors of N-myristoyl transferase towards antifungal agents discovery / Acoplamiento molecular de compuestos de origen natural como inhibidores de la N-miristoil transferasa en el descubrimiento de nuevos agentes antifúngicos

Fungal infections currently remain as a common problem in public health. Actually, drug discovery programs are oriented to the searching for lead structures. Virtual screening and molecular docking constitute great alternatives in order to find hit compounds. Novel infection targets can also be defined and employed together with molecular docking tools in drug discovery programs. Thus, thirty-two natural compounds were docked within the active site of N-myristoyl transferase (NMT) as antifungal enzyme target. From tested compounds, alkaloids, flavonoids, xanthones, and quinones exhibited strongest mean interaction with NMT than terpenoids, coumarins and phenolics. Particularly, affinities for one aporphine alkaloid, a prenylated flavonoid and two xanthones resulted to be comparable with that of previously reported synthetic inhibitor. Several hydrophobic and polar contacts were demonstrated by comparing different computational tools. The present results let to establish three possible lead structures to develop antifungal drugs although subsequent SAR analyses are still required.

Las infecciones causadas por hongos continúan siendo un problema de salud pública en la actualidad. De hecho, existen diversos programas para el descubrimiento de fármacos enfocados en la búsqueda de estructuras plantilla. El mapeo virtual junto con docking molecular constituye una alternativa importante para encontrar potenciales estructuras promisorias. Mediante herramientas de docking molecular se pueden definir nuevos blancos terapéuticos para combatir diversas infecciones. Por tanto, se llevó a cabo el estudio del acoplamiento molecular a treinta y dos compuestos de origen natural, empleando la N-miristoil transferasa (NMT) como blanco enzimático antifúngico. De los compuestos ensayados, alcaloides, flavonoides, xantonas y quinonas mostraron interacción media más fuerte con la NMT que los terpenos, cumarinas y fenólicos. Particularmente, la afinidad encontrada para un alcaloide aporfínico, un flavonoide prenilado y dos xantonas resultó comparable con la encontrada para un inhibidor sintético reportado. En el presente trabajo se demostraron varias interacciones tanto hidrofóbicas como hidrofílicas mediante diversas herramientas computacionales. Los resultados encontrados permiten establecer tres posibles estructuras promisorias para el desarrollo de fármacos antifúngicos, aunque se requiere aún de estudios de relación estructura-actividad.