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1.
PLoS One ; 15(8): e0237901, 2020.
Article in English | MEDLINE | ID: mdl-32817697

ABSTRACT

Among the different indicators that quantify the spread of an epidemic such as the on-going COVID-19, stands first the reproduction number which measures how many people can be contaminated by an infected person. In order to permit the monitoring of the evolution of this number, a new estimation procedure is proposed here, assuming a well-accepted model for current incidence data, based on past observations. The novelty of the proposed approach is twofold: 1) the estimation of the reproduction number is achieved by convex optimization within a proximal-based inverse problem formulation, with constraints aimed at promoting piecewise smoothness; 2) the approach is developed in a multivariate setting, allowing for the simultaneous handling of multiple time series attached to different geographical regions, together with a spatial (graph-based) regularization of their evolutions in time. The effectiveness of the approach is first supported by simulations, and two main applications to real COVID-19 data are then discussed. The first one refers to the comparative evolution of the reproduction number for a number of countries, while the second one focuses on French departments and their joint analysis, leading to dynamic maps revealing the temporal co-evolution of their reproduction numbers.


Subject(s)
Betacoronavirus , Coronavirus Infections/epidemiology , Coronavirus Infections/transmission , Models, Statistical , Pneumonia, Viral/epidemiology , Pneumonia, Viral/transmission , Spatio-Temporal Analysis , Algorithms , COVID-19 , Coronavirus Infections/virology , Databases, Factual , Disease Transmission, Infectious/statistics & numerical data , France/epidemiology , Humans , Pandemics , Pneumonia, Viral/virology , Poisson Distribution , SARS-CoV-2 , Software
2.
Phys Rev E Stat Nonlin Soft Matter Phys ; 66(5 Pt 2): 056110, 2002 Nov.
Article in English | MEDLINE | ID: mdl-12513559

ABSTRACT

The Internet is a complex network of interconnected routers, and the existence of a collective behavior such as congestion suggests that the correlations between the different connections play a crucial role. It is thus critical to measure and quantify these correlations. We use methods of random matrix theory (RMT) to analyze the cross-correlation matrix C of information flow changes of 650 connections between 26 routers of the French scientific network "Renater." We find that C has the universal properties of the Gaussian orthogonal ensemble of random matrices: The distribution of eigenvalues-up to a rescaling that exhibits a typical correlation time of the order of 10 min-and the spacing distribution follow the predictions of RMT. There are some deviations for large eigenvalues which contain network-specific information and which identify genuine correlations between the connections. The study of the most correlated connections reveals the existence of "active centers" that are exchanging information with a large number of routers thereby inducing correlations between the corresponding connections. These strong correlations could be a reason for the observed self-similarity in the world-wide web traffic.

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