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1.
Data Brief ; 26: 104466, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31646156

ABSTRACT

This paper presents the raw data of biogas production and composition (relative pressures and concentrations of each of the biogas constituents) for batch experiments to evaluate the anaerobic digestion of xylose. Also, metagenomic sequencing data and analysis were reported. All data is available at Mendeley Data. 16S DNA sequencing data and metadata is available at MG-RAST (metagenomics.anl.gov/linkin.cgi?project = 9961). For further discussion, please refer to the scientific article entitled "Effect of acidic and thermal pretreatments on a microbial inoculum for hydrogen and volatile fatty acids production through xylose anaerobic acidogenic metabolism" (Mockaitis et al., 2020).

2.
AMB Express ; 9(1): 23, 2019 Feb 07.
Article in English | MEDLINE | ID: mdl-30729349

ABSTRACT

Extracellular polymeric substances (EPS) play major roles in the efficacy of biofilms such as anaerobic granules, ranging from structural stability to more specific functions. The EPS of three granular anaerobic sludges of different origins were studied and compared. Particularly, the peptides from the protein fraction were identified by mass spectrometry. Desulfoglaeba and Treponema bacterial genera and Methanosaeta and Methanobacterium archaeal genera were prominent in all three sludges. Methanosaeta concilii proteins were the most represented in EPS of all three sludges studied. Principally, four proteins found in the three sludges, the S-layer protein, the CO-methylating acetyl-CoA synthase, an ABC transporter substrate-binding protein and the methyl-coenzyme M reductase, were expressed by Methanosaeta concilii. Mainly catabolic enzymes were found from the 45 proteins identified in the protein fraction of EPS. This suggests that EPS may have a role in allowing extracellular catabolic reactions.

3.
Environ Sci Pollut Res Int ; 25(22): 21318-21331, 2018 Aug.
Article in English | MEDLINE | ID: mdl-28842799

ABSTRACT

Granulation of biomass is at the basis of the operation of the most successful anaerobic systems (UASB, EGSB and IC reactors) applied worldwide for wastewater treatment. Despite of decades of studies of the biomass granulation process, it is still not fully understood and controlled. "Degranulation/lack of granulation" is a problem that occurs sometimes in anaerobic systems resulting often in heavy loss of biomass and poor treatment efficiencies or even complete reactor failure. Such a problem occurred in Mexico in two full-scale UASB reactors treating cheese wastewater. A close follow-up of the plant was performed to try to identify the factors responsible for the phenomenon. Basically, the list of possible causes to a granulation problem that were investigated can be classified amongst nutritional, i.e. related to wastewater composition (e.g. deficiency or excess of macronutrients or micronutrients, too high COD proportion due to proteins or volatile fatty acids, high ammonium, sulphate or fat concentrations), operational (excessive loading rate, sub- or over-optimal water upflow velocity) and structural (poor hydraulic design of the plant). Despite of an intensive search, the causes of the granulation problems could not be identified. The present case remains however an example of the strategy that must be followed to identify these causes and could be used as a guide for plant operators or consultants who are confronted with a similar situation independently of the type of wastewater. According to a large literature based on successful experiments at lab scale, an attempt to artificially granulate the industrial reactor biomass through the dosage of a cationic polymer was also tested but equally failed. Instead of promoting granulation, the dosage caused a heavy sludge flotation. This shows that the scaling of such a procedure from lab to real scale cannot be advised right away unless its operability at such a scale can be demonstrated.


Subject(s)
Cheese , Methane/chemistry , Sewage/chemistry , Waste Disposal, Fluid/methods , Wastewater/chemistry , Anaerobiosis , Biomass , Bioreactors , Mexico
4.
Bioresour Technol ; 245(Pt A): 1-9, 2017 Dec.
Article in English | MEDLINE | ID: mdl-28892677

ABSTRACT

The effect of pH control (4, 5, 6, 7) on volatile fatty acids (VFA) production from food waste was investigated in a leach bed reactor (LBR) operated at 50°C. Stabilisation of pH at 7 resulted in hydrolysis yield of 530g soluble chemical oxygen demand (sCOD)/kg total volatile solids (TVS) added and VFA yield of 247gCOD/kg TVS added, which were highest among all pH tested. Butyric acid dominated the VFA mix (49-54%) at pH of 7 and 6, while acetate composed the primary VFA (41-56%) at pH of 4 and 5. A metabolic shift towards lactic acid production was observed at pH of 5. Improving leachate recirculation rate further improved the hydrolysis and degradation efficiency by 10-16% and the acidification yield to 340gCOD/kgTVS added. The butyric acid concentration of 16.8g/L obtained at neutral pH conditions is among the highest reported in literature.


Subject(s)
Bioreactors , Fatty Acids, Volatile , Acids , Biological Oxygen Demand Analysis , Hydrogen-Ion Concentration , Hydrolysis
5.
Front Microbiol ; 7: 1188, 2016.
Article in English | MEDLINE | ID: mdl-27536280

ABSTRACT

Syngas generated by thermal gasification of biomass or coal can be steam reformed and purified into methane, which could be used locally for energy needs, or re-injected in the natural gas grid. As an alternative to chemical catalysis, the main components of the syngas (CO, CO2, and H2) can be used as substrates by a wide range of microorganisms, to be converted into gas biofuels, including methane. This study evaluates the carboxydotrophic (CO-consuming) methanogenic potential present in an anaerobic sludge from an upflow anaerobic sludge bed (UASB) reactor treating waste water, and elucidates the CO conversion routes to methane at 35 ± 3°C. Kinetic activity tests under CO at partial pressures (pCO) varying from 0.1 to 1.5 atm (0.09-1.31 mmol/L in the liquid phase) showed a significant carboxydotrophic activity potential for growing conditions on CO alone. A maximum methanogenic activity of 1 mmol CH4 per g of volatile suspended solid and per day was achieved at 0.2 atm of CO (0.17 mmol/L), and then the rate decreased with the amount of CO supplied. The intermediary metabolites such as acetate, H2, and propionate started to accumulate at higher CO concentrations. Inhibition experiments with 2-bromoethanesulfonic acid (BES), fluoroacetate, and vancomycin showed that in a mixed culture CO was converted mainly to acetate by acetogenic bacteria, which was further transformed to methane by acetoclastic methanogens, while direct methanogenic CO conversion was negligible. Methanogenesis was totally blocked at high pCO in the bottles (≥1 atm). However it was possible to achieve higher methanogenic potential under a 100% CO atmosphere after acclimation of the sludge to CO. This adaptation to high CO concentrations led to a shift in the archaeal population, then dominated by hydrogen-utilizing methanogens, which were able to take over acetoclastic methanogens, while syntrophic acetate oxidizing (SAO) bacteria oxidized acetate into CO2 and H2. The disaggregation of the granular sludge showed a negative impact on their methanogenic activity, confirming that the acetoclastic methanogens were the most sensitive to CO, and a contrario, the advantage of using granular sludge for further development toward large-scale methane production from CO-rich syngas.

6.
Bioresour Technol ; 200: 624-30, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26551650

ABSTRACT

This study compared the acidogenic fermentation of Scenedesmus sp.-AMDD at laboratory-scale, under mesophilic (35°C) and thermophilic conditions (55°C). Preliminary batch tests were performed to evaluate best conditions for volatile fatty acid (VFA) production from microalgal biomass, with respect to the inoculum, pH and nutrients. The use of bovine manure as inoculum, the operating pH of 4.5 and the addition of a nutrient mix, resulted in a high VFA production of up to 222mgg(-1) total volatile solid (TVS), with a butyrate share of 27%. Both digesters displayed similar hydrolytic activity with 0.38±0.02 and 0.42±0.03 g soluble chemical oxygen demand (COD)g(-1) TVS for the digesters operated at 35 and 55°C, respectively. Mesophilic conditions were more favorable for VFA production, which reached 171±5, compared to 88±12 mg soluble CODg(-1) TVS added under thermophilic conditions (94% more). It was shown that in both digesters, butyrate was the predominant VFA.


Subject(s)
Acids/pharmacology , Fatty Acids, Volatile/metabolism , Fermentation , Scenedesmus/metabolism , Temperature , Animals , Biological Oxygen Demand Analysis , Biomass , Bioreactors/microbiology , Cattle , Fermentation/drug effects , Hydrogen/metabolism , Hydrogen-Ion Concentration , Hydrolysis , Manure , Methane/metabolism , Microalgae/metabolism , Scenedesmus/drug effects , Time Factors , Waste Disposal, Fluid
7.
Adv Biochem Eng Biotechnol ; 151: 101-15, 2015.
Article in English | MEDLINE | ID: mdl-26337845

ABSTRACT

Direct interspecies electrons transfer (DIET) is a syntrophic metabolism in which free electrons flow from one cell to another without being shuttled by reduced molecules such as molecular hydrogen or formate. As more and more microorganisms show a capacity for electron exchange, either to export or import them, it becomes obvious that DIET is a syntrophic metabolism that is much more present in nature than previously thought. This article reviews literature related to DIET, specifically in reference to anaerobic digestion. Anaerobic granular sludge, a biofilm, is a specialized microenvironment where syntrophic bacterial and archaeal organisms grow together in close proximity. Exoelectrogenic bacteria degrading organic substrates or intermediates need an electron sink and electrotrophic methanogens represent perfect partners to assimilate those electrons and produce methane. The granule extracellular polymeric substances by making the biofilm matrix more conductive, play a role as electrons carrier in DIET.


Subject(s)
Electron Transport , Anaerobiosis , Animals , Bacteria/metabolism , Humans , Sewage , Species Specificity
8.
Can J Microbiol ; 60(6): 407-15, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24896194

ABSTRACT

Specific inhibitors such as 2-bromoethanesulfonate (BES) and vancomycin were employed in activity batch tests to decipher metabolic pathways that are preferentially used by a mixed anaerobic consortium (sludge from an anaerobic digester) to transform carbon monoxide (CO) into methane (CH4). We first evaluated the inhibitory effect of both BES and vancomycin on the microbial community, as well as the efficiency and stability of vancomycin at 35 °C, over time. The activity tests with CO2-H2, CO, glucose, acetate, formate, propionate, butyrate, methanol, and ethanol showed that vancomycin does not inhibit some Gram-negative bacteria, and 50 mmol/L BES effectively blocks CH4 production in the sludge. However, when sludge was incubated with propionate, butyrate, methanol, or ethanol as the sole energy and carbon source, methanogenesis was only partially inhibited by BES. Separate tests showed that 0.07 mmol/L vancomycin is enough to maintain its inhibitory efficiency and stability in the population for at least 32 days at 35 °C. Using the inhibitors above, it was demonstrated that CO conversion to CH4 is an indirect, 2-step process, in which the CO is converted first to acetate and subsequently to CH4.


Subject(s)
Alkanesulfonic Acids/pharmacology , Anti-Bacterial Agents/pharmacology , Bacteria, Anaerobic/metabolism , Carbon Monoxide/metabolism , Methane/metabolism , Vancomycin/pharmacology , Acetates/metabolism , Archaea/drug effects , Archaea/metabolism , Bacteria, Anaerobic/drug effects , Bacteria, Anaerobic/genetics , Carbon Dioxide/metabolism , Formates/metabolism , Glucose/metabolism , Propionates/metabolism , Sewage/microbiology , Vancomycin Resistance/genetics
9.
PLoS One ; 9(2): e89480, 2014.
Article in English | MEDLINE | ID: mdl-24586811

ABSTRACT

Two previously unknown modes of biomineralization observed in the presence of Carboxydothermus hydrogenoformans are presented. Following the addition of NaHCO3 and the formation of an amorphous calcium phosphate precipitate in a DSMZ medium inoculated with C. hydrogenoformans, two distinct crystalline solids were recovered after 15 and 30 days of incubation. The first of these solids occurred as micrometric clusters of blocky, angular crystals, which were associated with bacterial biofilm. The second solid occurred as 30-50 nm nanorods that were found scattered among the organic products of bacterial lysis. The biphasic mixture of solids was clearly dominated by the first phase. The X-ray diffractometry (XRD) peaks and Fourier transform infrared spectroscopy (FTIR) spectrum of this biphasic material consistently showed features characteristic of Mg-whitlockite. No organic content or protein could be identified by dissolving the solids. In both cases, the mode of biomineralization appears to be biologically induced rather than biologically controlled. Since Mg is known to be a strong inhibitor of the nucleation and growth of CaP, C. hydrogenoformans may act by providing sites that chelate Mg or form complexes with it, thus decreasing its activity as nucleation and crystal growth inhibitor. The synthesis of whitlockite and nano-HAP-like material by C. hydrogenoformans demonstrates the versatility of this organism also known for its ability to perform the water-gas shift reaction, and may have applications in bacterially mediated synthesis of CaP materials, as an environmentally friendly alternative process.


Subject(s)
Calcium Phosphates/metabolism , Thermoanaerobacter/metabolism , Calcium Phosphates/chemistry , Crystallization , Crystallography, X-Ray , Microscopy, Electron, Scanning , Microscopy, Electron, Transmission , Spectrometry, X-Ray Emission , Spectroscopy, Fourier Transform Infrared
10.
AMB Express ; 3(1): 60, 2013 Oct 07.
Article in English | MEDLINE | ID: mdl-24099169

ABSTRACT

Carboxydothermus hydrogenoformans is a thermophilic anaerobic strain most widely known for its ability to produce hydrogen (H2) when grown on carbon monoxide (CO). Although relatively well studied, growth characterization on pyruvate has never been assessed. The present work fully characterizes growth of the bacterium on pyruvate as a sole carbon source. C. hydrogenoformans demonstrated a growth rate of 0.03 h-1, with pyruvate consumption ranging between 0.21 and 0.48 mol · g-1 volatile suspended solid · d-1. A lag phase was also observed when switching from pyruvate to CO. When grown simultaneously on pyruvate and CO, pyruvate consumption was initiated upon CO depletion. This was attributed to pyruvate oxidation inhibition by CO, and not to a diauxic phenomenom. The strain also showed homoacetogenic activity.

11.
Environ Technol ; 33(13-15): 1763-72, 2012.
Article in English | MEDLINE | ID: mdl-22988638

ABSTRACT

In-storage psychrophilic anaerobic digestion develops by microbial acclimation in covered swine-manure storage tanks, producing CH4 and stabilizing organic matter. To optimize the system's performance, the process kinetics must be understood. The objective of this study was to evaluate kinetic parameters describing the major stages in the digestion process, and to investigate the effect of temperature acclimation on these parameters. Specific activity tests were performed using manure inocula and five substrates at three incubation temperatures. Extant substrate activities were determined analytically for each case, and intrinsic kinetic parameters for glucose uptake were estimated by grid search fitting to the Monod model. The results demonstrate that this acclimated microbial community exhibits different kinetic parameters to those of the mesophilic communities currently modelled in the literature, with increased activity at low temperatures, varying with substrate and temperature. For glucose, the higher uptake is accompanied by lower microbial yield and half-saturation constant. Decomposing these values suggests that active psychrophilic and mesophilic microbial populations co-exist within the community. This work also confirms that a new method of assessing microbial substrate kinetics must be developed for manure microbial communities, separating microbial mass from other suspended organics.


Subject(s)
Manure/microbiology , Microbial Consortia/physiology , Waste Disposal, Fluid/methods , Acclimatization , Acetates/metabolism , Animals , Carbon Dioxide/metabolism , Cold Temperature , Glucose/metabolism , Hydrogen/metabolism , Kinetics , Models, Theoretical , Swine
12.
Bioprocess Biosyst Eng ; 35(3): 341-9, 2012 Mar.
Article in English | MEDLINE | ID: mdl-21779889

ABSTRACT

The owners of farm-scale anaerobic digesters are relying on off-farm wastes or energy crops as a co-digestion feedstock with animal manure in order to increase their production of methane and thus revenues. Switchgrass represents an interesting feedstock for Canadian digesters owners as it is a high-yielding low-maintenance perennial crop, well adapted to northern climate. Methane potential assays in batch tests showed methane production of 19.4 ± 3.6, 28.3 ± 1.7, 37.3 ± 7.1 and 45.7 ± 0.8 L kg(-1), for raw manure, blended manure, manure and mulched switchgrass, manure and pretreated switchgrass, respectively. Two 6-L lab-scale anaerobic digesters were operated for 130 days in order to assess the benefit of co-digesting switchgrass with bovine manure (digester #2), at a 20% wet mass fraction, compared with a manure-only operation (digester #1) The digesters were operated at an hydraulic retention time of 37 ± 6 days and at loads of 2.4 ± 0.6 and 2.6 ± 0.6 kg total volatile solids (TVS) L(-1) day(-1) for digesters #1 (D1) and #2 (D2), respectively. The TVS degradation reached 25 and 39%, which resulted in a methane production of 1.18 ± 0.18 and 2.19 ± 0.31 L day(-1) for D1 and D2, respectively. The addition of 20% on a wet mass ratio of switchgrass to a manure digester increased its methane production by 86%. The co-digestion of switchgrass in a 500 m(3) manure digester could yield up to 10.2 GJ day(-1) of purified methane or 1.1 MWh day(-1) of electricity.


Subject(s)
Biofuels , Manure/microbiology , Methane/metabolism , Panicum , Anaerobiosis , Animals , Cattle
13.
Appl Microbiol Biotechnol ; 91(6): 1677-84, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21822902

ABSTRACT

The objective of this study was to improve the biological water-gas shift reaction for producing hydrogen (H(2)) by conversion of carbon monoxide (CO) using an anaerobic thermophilic pure strain, Carboxydothermus hydrogenoformans. Specific hydrogen production rates and yields were investigated at initial biomass densities varying from 5 to 20 mg volatile suspended solid (VSS) L(-1). Results showed that the gas-liquid mass transfer limits the CO conversion rate at high biomass concentrations. At 100-rpm agitation and at CO partial pressure of 1 atm, the optimal substrate/biomass ratio must exceed 5 mol CO g(-1) biomass VSS in order to avoid gas-liquid substrate transfer limitation. An average H(2) yield of 94 ± 3% and a specific hydrogen production rate of ca. 3 mol g(-1) VSS day(-1) were obtained at initial biomass densities between 5 and 8 mg VSS(-1). In addition, CO bioconversion kinetics was assessed at CO partial pressure from 0.16 to 2 atm, corresponding to a dissolved CO concentration at 70°C from 0.09 to 1.1 mM. Specific bioactivity was maximal at 3.5 mol CO g(-1) VSS day(-1) for a dissolved CO concentration of 0.55 mM in the culture. This optimal concentration is higher than with most other hydrogenogenic carboxydotrophic species.


Subject(s)
Bacteria/metabolism , Carbon Monoxide/metabolism , Hydrogen/metabolism , Bacteria/chemistry , Biomass , Biotransformation , Carbon Monoxide/chemistry , Hydrogen/chemistry , Kinetics
14.
Photosynth Res ; 109(1-3): 231-47, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21461850

ABSTRACT

There is currently a renewed interest in developing microalgae as a source of renewable energy and fuel. Microalgae hold great potential as a source of biomass for the production of energy and fungible liquid transportation fuels. However, the technologies required for large-scale cultivation, processing, and conversion of microalgal biomass to energy products are underdeveloped. Microalgae offer several advantages over traditional 'first-generation' biofuels crops like corn: these include superior biomass productivity, the ability to grow on poor-quality land unsuitable for agriculture, and the potential for sustainable growth by extracting macro- and micronutrients from wastewater and industrial flue-stack emissions. Integrating microalgal cultivation with municipal wastewater treatment and industrial CO(2) emissions from coal-fired power plants is a potential strategy to produce large quantities of biomass, and represents an opportunity to develop, test, and optimize the necessary technologies to make microalgal biofuels more cost-effective and efficient. However, many constraints on the eventual deployment of this technology must be taken into consideration and mitigating strategies developed before large scale microalgal cultivation can become a reality. As a strategy for CO(2) biomitigation from industrial point source emitters, microalgal cultivation can be limited by the availability of land, light, and other nutrients like N and P. Effective removal of N and P from municipal wastewater is limited by the processing capacity of available microalgal cultivation systems. Strategies to mitigate against the constraints are discussed.


Subject(s)
Biofuels , Carbon Dioxide/metabolism , Carbon/metabolism , Industrial Waste , Microalgae/growth & development , Nitrogen/metabolism , Batch Cell Culture Techniques/methods , Biodegradation, Environmental , Biomass , Biotechnology , Conservation of Natural Resources , Lipids/biosynthesis , Microalgae/metabolism , Waste Disposal, Fluid
15.
Appl Microbiol Biotechnol ; 90(3): 827-36, 2011 May.
Article in English | MEDLINE | ID: mdl-21400198

ABSTRACT

Electricity generation in microbial fuel cells (MFCs) has been a subject of significant research efforts. MFCs employ the ability of electricigenic bacteria to oxidize organic substrates using an electrode as an electron acceptor. While MFC application for electricity production from a variety of organic sources has been demonstrated, very little research on electricity production from carbon monoxide and synthesis gas (syngas) in an MFC has been reported. Although most of the syngas today is produced from non-renewable sources, syngas production from renewable biomass or poorly degradable organic matter makes energy generation from syngas a sustainable process, which combines energy production with the reprocessing of solid wastes. An MFC-based process of syngas conversion to electricity might offer a number of advantages such as high Coulombic efficiency and biocatalytic activity in the presence of carbon monoxide and sulfur components. This paper presents a discussion on microorganisms and reactor designs that can be used for operating an MFC on syngas.


Subject(s)
Bacteria/metabolism , Bioelectric Energy Sources/microbiology , Carbon Monoxide/metabolism , Gases/metabolism , Bacteria/chemistry , Carbon Monoxide/chemistry , Electricity , Gases/chemistry , Industrial Microbiology
16.
Environ Sci Technol ; 45(5): 2006-12, 2011 Mar 01.
Article in English | MEDLINE | ID: mdl-21291242

ABSTRACT

Gasification of biomass produces a mixture of gas (mainly carbon monoxide (CO), carbon dioxide (CO(2)), and hydrogen (H(2))) called synthesis gas, or syngas, by thermal degradation without combustion. Syngas can be used for heat or electricity production by thermochemical processes. This project aims at developing an alternative way to bioupgrade syngas into biogas (mainly methane), via anaerobic fermentation. Nonacclimated industrial granular sludge to be used as reactor inoculum was initially evaluated for mesophilic carboxydotrophic methanogenesis potential in batch tests at 4 and 8 mmol CO/g VSS.d, in the absence and presence of H(2) and CO(2), respectively. Granular sludge was then introduced into a 30 L gas-lift reactor and supplied with CO, to study the production of methane and other metabolites, at different gas dilutions as well as feeding and recirculation rates. A maximal CO conversion efficiency of 75%, which was gas-liquid mass transfer limited, occurred at a CO partial pressure of 0.6 atm combined with a gas recirculation ratio of 20:1. The anaerobic granule potential for methanogenesis from CO was likely hydrogenotrophic, combined with CO-dependent H(2) formation, either under mesophilic or thermophilic conditions. Thermophilic conditions provide the anaerobic granules with a CO-bioconversion potential significantly larger (5-fold) than under mesophilic conditions, so long as the gas-liquid transfer is alleviated.


Subject(s)
Methane/metabolism , Sewage/chemistry , Waste Disposal, Fluid/methods , Water Pollutants, Chemical/metabolism , Anaerobiosis , Biodegradation, Environmental , Bioreactors/microbiology , Carbon Monoxide/metabolism , Fermentation , Gases/metabolism , Heating , Sewage/microbiology , Volatilization
17.
PLoS One ; 5(9): e13033, 2010 Sep 27.
Article in English | MEDLINE | ID: mdl-20885952

ABSTRACT

Increasing demand for the production of renewable fuels has recently generated a particular interest in microbial production of butanol. Anaerobic bacteria, such as Clostridium spp., can naturally convert carbohydrates into a variety of primary products, including alcohols like butanol. The genetics of microorganisms like Clostridium acetobutylicum have been well studied and their solvent-producing metabolic pathways characterized. In contrast, less is known about the genetics of Clostridium spp. capable of converting syngas or its individual components into solvents. In this study, the type of strain of a new solventogenic Clostridium species, C. carboxidivorans, was genetically characterized by genome sequencing. C. carboxidivorans strain P7(T) possessed a complete Wood-Ljungdahl pathway gene cluster, involving CO and CO(2) fixation and conversion to acetyl-CoA. Moreover, with the exception of an acetone production pathway, all the genetic determinants of canonical ABE metabolic pathways for acetate, butyrate, ethanol and butanol production were present in the P7(T) chromosome. The functionality of these pathways was also confirmed by growth of P7(T) on CO and production of CO(2) as well as volatile fatty acids (acetate and butyrate) and solvents (ethanol and butanol). P7(T) was also found to harbour a 19 Kbp plasmid, which did not include essential or butanol production related genes. This study has generated in depth knowledge of the P7(T) genome, which will be helpful in developing metabolic engineering strategies to improve C. carboxidivorans's natural capacity to produce potential biofuels from syngas.


Subject(s)
Butanols/metabolism , Carbon Monoxide/metabolism , Clostridium/genetics , Clostridium/metabolism , Genomics , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Clostridium/classification , Clostridium/enzymology , Genome, Bacterial , Molecular Sequence Data , Phylogeny
18.
J Mol Microbiol Biotechnol ; 15(2-3): 190-8, 2008.
Article in English | MEDLINE | ID: mdl-18685271

ABSTRACT

Mycobacterium austroafricanum IFP 2012 is able to slowly grow on methyl tert-butyl ether (MTBE), a fuel oxygenate widely used as a gasoline additive. The potential of M. austroafricanum IFP 2012 for aerobic MTBE degradation was investigated in the presence of a secondary carbon source, isopropanol. The strain was then tested for MTBE biodegradation at the laboratory-scale in a fixed-bed reactor using perlite as the matrix, and isopropanol was injected once a week to maintain M. austroafricanum IFP 2012 biomass inside the perlite bed. The biofilter was operated for 85 days at an influent flow rate of 20 ml/h by varying the MTBE concentration from 10 to 20 mg/l. The hydraulic retention time was fixed at 5 days. The removal of MTBE depended on the inlet MTBE concentration and a MTBE removal efficiency higher than 99% was obtained for MTBE concentrations up to 15 mg/l. A set of 16S rRNA gene primers specific for M. austroafricanum species was used to analyze the DNA extracted from the biofilter effluent in order to detect the presence of M. austroafricanum IFP 2012 and to estimate the effect of periodic injections of isopropanol on the release of the strain from the perlite bed. The results demonstrated that the injection of isopropanol served to maintain an active MTBE degrading biomass in the biofilter and that this system could be used to effectively treat MTBE contaminated groundwater.


Subject(s)
Bioreactors , Biotechnology , Methyl Ethers/metabolism , Mycobacterium/metabolism , 2-Propanol/metabolism , Biomass , Gasoline , Mycobacterium/classification , Water Pollutants, Chemical/metabolism
19.
Environ Sci Technol ; 42(8): 3011-7, 2008 Apr 15.
Article in English | MEDLINE | ID: mdl-18497159

ABSTRACT

Coupling of methanogenic and methanotrophic catabolisms was performed in a single-stage technology equipped with a water electrolysis cell placed in the effluent recirculation loop. The electrolysis-generated hydrogen served as an electron donor for both bicarbonate reduction into CH4 and reductive dechlorination, while the O2 and CH4, supported the cometabolic oxidation of chlorinated intermediates left over by the tetrachloroethylene (PCE) transformation. The electrolytical methanogenic/methanotrophic coupled (eMaMoC) process was tested in a laboratory-scale setup at PCE loads ranging from 5 to 50 micromol/L(rx) x d (inlet concentrations from 4 to 11 mg/L), and at various hydraulic residence times (HRT). Degradation followed essentially a reductive dechlorination pathway from PCE to cis-1,2-dichloroethene (DCE), and an oxidative pathway from DCE to CO2. PCE reductive dechlorination to DCE was consistently over 98% while a maximum oxidative DCE mineralization of 89% was obtained at a load of 4.3 micromol PCE/ L(rx) x d and an HRT of 6 days. Controlling dissolved oxygen concentrations within a relatively low range (2-3 mg/L) seemed instrumental to sustain the overall degradation capacity. Degradation kinetics were further evaluated: the apparent half-saturation constant (K(s)) had to be set relatively high (29 microM) for the simulated data to best fit the experimental ones. In spite of such kinetic limitations, the eMaMoC system, while fueled by water electrolysis, was effective in building and sustaining a functional methanogenic/methanotrophic consortium capable of significant PCE mineralization in a single-stage process. Hence, degradation standards are within reach so long as the methanotrophic DCE-oxidizing potential, including substrate affinity, are optimized and HRT accordingly adjusted.


Subject(s)
Bioreactors , Methane/metabolism , Tetrachloroethylene/metabolism , Anaerobiosis , Biodegradation, Environmental , Electrolysis , Oxygen/metabolism
20.
Can J Microbiol ; 54(2): 83-90, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18388976

ABSTRACT

The effects of adding an adapted inoculum to liquid pig manure (LPM) prior to anaerobic digestion were evaluated by standard analytical methods. In parallel, the phylogenetic diversity of the microbial community of raw and anaerobically digested pig manure was studied by both denaturing gradient gel electrophoresis (DGGE) and sequence analysis of 16S rRNA fragments amplified by polymerase chain reaction. Gas production, volative fatty acid production, removal of soluble chemical oxygen demand, and removal of volatile soluble solids were measured on raw and on inoculated liquid pig manure subjected to anaerobic digestion. DGGE profiles of 16S rRNA genes were used to compare the major elements of the bacterial community composition in raw LPM with those present under various incubation conditions. Major bands were excised and sequenced to gain insight into the identities of the bacterial populations from LPM treated under different conditions. The results show that the addition of an adapted inoculum did not have a major impact on the conversion of pig manure into soluble organic matter and did not significantly change the microbial populations present during anaerobic digestion of LPM. Bacterial composition also indicated that Clostridium species are important constituents of the LPM community.


Subject(s)
Bacteria/classification , Bacteria/genetics , Biodiversity , Manure/microbiology , Anaerobiosis , Animals , Bacteria/isolation & purification , Bacteria/metabolism , Cluster Analysis , DNA Fingerprinting , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Electrophoresis, Polyacrylamide Gel/methods , Fatty Acids, Volatile/metabolism , Molecular Sequence Data , Nucleic Acid Denaturation , Phylogeny , Polymerase Chain Reaction , RNA, Ribosomal, 16S/genetics , Refuse Disposal , Sequence Analysis, DNA , Swine , Waste Disposal, Fluid
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