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1.
PLoS One ; 19(4): e0301444, 2024.
Article in English | MEDLINE | ID: mdl-38626150

ABSTRACT

Arid zone grassland is a crucial component of terrestrial ecosystems and plays a significant role in ecosystem protection and soil erosion prevention. However, accurately mapping grassland spatial information in arid zones presents a great challenge. The accuracy of remote sensing grassland mapping in arid zones is affected by spectral variability caused by the highly diverse landscapes. In this study, we explored the potential of a rectangular tile classification model, constructed using the random forest algorithm and integrated images from Sentinel-1A (synthetic aperture radar imagery) and Sentinel-2 (optical imagery), to enhance the accuracy of grassland mapping in the semiarid to arid regions of Ordos, China. Monthly Sentinel-1A median value images were synthesised, and four MODIS vegetation index mean value curves (NDVI, MSAVI, NDWI and NDBI) were used to determine the optimal synthesis time window for Sentinel-2 images. Seven experimental groups, including 14 experimental schemes based on the rectangular tile classification model and the traditional global classification model, were designed. By applying the rectangular tile classification model and Sentinel-integrated images, we successfully identified and extracted grasslands. The results showed the integration of vegetation index features and texture features improved the accuracy of grassland mapping. The overall accuracy of the Sentinel-integrated images from EXP7-2 was 88.23%, which was higher than the accuracy of the single sensor Sentinel-1A (53.52%) in EXP2-2 and Sentinel-2 (86.53%) in EXP5-2. In all seven experimental groups, the rectangular tile classification model was found to improve overall accuracy (OA) by 1.20% to 13.99% compared to the traditional global classification model. This paper presents novel perspectives and guidance for improving the accuracy of remote sensing mapping for land cover classification in arid zones with highly diverse landscapes. The study presents a flexible and scalable model within the Google Earth Engine framework, which can be readily customized and implemented in various geographical locations and time periods.


Subject(s)
Ecosystem , Satellite Imagery , Satellite Imagery/methods , Grassland , Remote Sensing Technology/methods , China
2.
Front Plant Sci ; 14: 1267108, 2023.
Article in English | MEDLINE | ID: mdl-38235205

ABSTRACT

Introduction: Obtaining wheat growth information accurately and efficiently is the key to estimating yields and guiding agricultural development. Methods: This paper takes the precision agriculture demonstration area of Jiaozuo Academy of Agriculture and Forestry in Henan Province as the research area to obtain data on wheat biomass, nitrogen content, chlorophyll content, and leaf area index. By using the coefficient of variation method, a Comprehensive Growth Monitoring Indicator (CGMI) was constructed to perform fractional derivative processing on drone spectral data, and correlation analysis was performed on the fractional derivative spectra with a single indicator and CGMI, respectively. Then, grey correlation analysis was carried out on differential spectral bands with high correlation, the grey correlation coefficients between differential spectral bands were calculated, and spectral bands with high correlation were screened and taken as input variables for the model. Next, ridge regression, random forest, and XGboost models were used to establish a wheat CGMI inversion model, and the coefficient of determination (R2) and root mean squared error (RMSE) were adopted for accuracy evaluation to optimize the wheat optimal growth inversion model. Results and discussion: The results of the study show that: using the data of wheat biomass, nitrogen content, chlorophyll content and leaf area index to construct the comprehensive growth monitoring indicators, the correlation between the wheat growth monitoring indicators and the spectra was calculated, and the results showed that the correlation between the comprehensive growth monitoring indicators and the single indicator correlation had different degrees of increase, and the growth rate could reach 82.22%. The correlation coefficient between the comprehensive growth monitoring indexes and the differential spectra reached 0.92 at the flowering stage, and compared with the correlation coefficient with the original spectra at the same period, the correlation coefficients increased to different degrees, which indicated that the differential processing of spectral data could effectively enhance the spectral correlation. The three models of Random Forest, Ridge Regression and XGBoost were used to construct the wheat growth inversion model with the best effect at the flowering stage, and the XGBoost model had the highest inversion accuracy when comparing in the same period, with the training and test sets reaching 0.904 and 0.870, and the RMSEs were 0.050 and 0.079, so that the XGBoost model can be used as an effective method of monitoring the growth of wheat. To sum up, this study demonstrates that the combination of constructing comprehensive growth monitoring indicators and differential processing spectra can effectively improve the accuracy of wheat growth monitoring, bringing new methods for precision agriculture management.

3.
Soft Matter ; 17(9): 2557-2567, 2021 Mar 11.
Article in English | MEDLINE | ID: mdl-33514985

ABSTRACT

The sliding dynamics of one- or multi-ring structures along a semiflexible cyclic polymer in radial poly[n]catenanes is investigated using molecular dynamics simulations. The fixed and fluctuating (non-fixed) semiflexible central cyclic polymers are considered, respectively. With increasing bending energy of the central cyclic polymer, for the fixed case, the diffusion coefficient increases monotonically due to the reduction of the tortuous sliding path, while for the fluctuating case, the diffusion coefficient decreases. This indicates that the contribution of the polymer fluctuation is suppressed by a further increase in the stiffness of the central cyclic chain. Compared with the one ring case, the mean-square displacement of the multiple rings exhibits a unique sub-diffusive behavior at intermediate time scales due to the repulsion between two neighboring rings. In addition, for the multi-ring system, the whole set of rings exhibit relatively slower diffusion, but faster local dynamics of threading rings and rotational diffusion of the central cyclic polymer arise. These results may help us to understand the diffusion motion of rings in radial poly[n]catenanes from a fundamental point of view and control the sliding dynamics in molecular designs.

4.
Polymers (Basel) ; 14(1)2021 Dec 26.
Article in English | MEDLINE | ID: mdl-35012102

ABSTRACT

The sliding dynamics along two asymmetric/symmetric axial chains of ring chains linked by a linear chainis investigated using molecular dynamics (MD) simulations. A novel sub-diffusion behavior is observed for ring chains sliding along eithera fixed rod-like chain or fluctuating axial chain on asymmetric/symmetric axial chainsat the intermediate time range due to their strongly interplay between two ring chains. However, two ring chains slide in the normal diffusion at along time range because their sliding dynamics can be regarded as an overall motion of two ring chains. For ring chains sliding on two symmetric/asymmetricaxial chains, the diffusion coefficient D of ring chains relies on the bending energy of axial chains (Kb) as well as the distance of two axial chains (d). There exists a maximum diffusion coefficient Dmax at d = d* in which ring chains slide at the fastest velocity due to the maximum conformational entropy for the linking chain between two ring chainsat d = d*. Ring chain slide on fixed rod-like axial chainsfaster in the symmetric axial chain case than that in the asymmetric axial chain case. However, ring chains slide on fluctuatingaxial chainsslower in the symmetric axial chain case than that in the asymmetric axial chain case. This investigation can provide insights into the effects of the linked chain conformation on the sliding dynamics of ring chains in a slide-ring gel.

5.
Polymers (Basel) ; 12(11)2020 Nov 11.
Article in English | MEDLINE | ID: mdl-33187232

ABSTRACT

The effects of topological constraints on penetration structures of semi-flexible ring polymers in a melt are investigated using molecular dynamics simulations, considering simultaneously the effects of the chain stiffness. Three topology types of rings are considered: 01-knot (the unknotted), 31-knot and 61-knot ring polymers, respectively. With the improved algorithm to detect and quantify the inter-ring penetration (or inter-ring threading), the degree of ring threading does not increase monotonously with the chain stiffness, existing a peak value at the intermediate stiffness. It indicates that rings interpenetrate most at intermediate stiffness where there is a balance between coil expansion (favoring penetrations) and stiffness (inhibiting penetrations). Meanwhile, the inter-ring penetration would be suppressed with the knot complexity of the rings. The analysis of effective potential between the rings provides a better understanding for this non-monotonous behavior in inter-ring penetration.

6.
Sci Rep ; 10(1): 11702, 2020 Jul 16.
Article in English | MEDLINE | ID: mdl-32678189

ABSTRACT

Effective interaction between two asymmetric wedges immersed in a two-dimensional active bath is investigated by computer simulations. The attraction-repulsion transition of effective force between two asymmetric wedges is subjected to the relative position of two wedges, the wedge-to-wedge distance, the active particle density, as well as the apex angle of two wedges. By exchanging the position of the two asymmetric wedges in an active bath, firstly a simple attraction-repulsion transition of effective force occurs, completely different from passive Brownian particles. Secondly the transition of effective force is symmetric for the long-range distance between two asymmetric wedges, while it is asymmetric for the short-range case. Our investigations may provide new possibilities to govern the motion and assembly of microscopic objects by taking advantage of the self-driven behaviour of active particles.

7.
Polymers (Basel) ; 11(12)2019 Dec 02.
Article in English | MEDLINE | ID: mdl-31810347

ABSTRACT

Coarse-grained molecular dynamics simulations are used to investigate the conformations of binary semiflexible ring polymers (SRPs) of two different lengths confined in a hard sphere. Segregated structures of SRPs in binary mixtures are strongly dependent upon the number density of system (ρ), the bending energy of long SRPs (Kb, long), and the chain length ratio of long to short SRPs (α). With a low ρ or a weak Kb, long at a small ratio α, long SRPs are immersed randomly in the matrix of short SRPs. As ρ and bending energy of long SRPs (Kb, long) are increased up to a certain value for a large ratio α, a nearly complete segregation between long and short SRPs is observed, which can be further characterized by the ratio of tangential and radial components of long SRPs velocity. These explicit segregated structures of the two components in spherical confinement are induced by a delicate competition between the entropic excluded volume (depletion) effects and bending contributions.

8.
J Pediatr Surg ; 51(9): 1501-6, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27230801

ABSTRACT

PURPOSE: Overexpression of collagen triple helix-repeat containing 1 (CTHRC1) has been reported in many malignancies, where it plays an important role in tumorigenesis and progression. This study aimed to examine the clinical significance of CTHRC1 expression in patients with Wilms' tumor (WT). METHODS: The expression of CTHRC1, and its correlations with various clinicopathological parameters, was analyzed using immunohistochemistry in 42 WT tissues and 42 adjacent non-cancerous tissues. Samples from 8 patients with WT were examined using Western blotting and quantitative real-time polymerase chain reaction (qRT-PCR). Kaplan-Meier analysis and Cox proportional hazards regression models were used to investigate the correlations between CTHRC1 expression and the prognosis of patients with WT. RESULTS: Immunohistochemistry, Western blotting, and qRT-PCR revealed that the expression of CTHRC1 was significantly higher in WT tumors, compared to the expression in the adjacent non-cancerous tissues. Furthermore, high tumor expression of CTHRC1 was associated with tumor size, clinical stage, histopathological type, and vascular invasion/metastasis. Moreover, the proportions of expressing cells in the WT specimens was higher than the proportions in the matched adjacent non-cancerous tissues. Kaplan-Meier analysis revealed that patients with high CTHRC1 expression exhibited a shorter survival, compared to patients with low CTHRC1 expression. Univariate and multivariate analyses also revealed that CTHRC1 expression was an independent prognostic factor for overall survival. CONCLUSIONS: Our preliminary results suggest that CTHRC1 is an independent prognostic factor, which may play an important role in tumorigenesis and progression, and may be a potential biomarker for WT.


Subject(s)
Biomarkers, Tumor/metabolism , Extracellular Matrix Proteins/metabolism , Kidney Neoplasms/diagnosis , Wilms Tumor/diagnosis , Adolescent , Blotting, Western , Child , Child, Preschool , Female , Follow-Up Studies , Humans , Immunohistochemistry , Infant , Kaplan-Meier Estimate , Kidney Neoplasms/metabolism , Kidney Neoplasms/mortality , Kidney Neoplasms/pathology , Male , Prognosis , Proportional Hazards Models , Real-Time Polymerase Chain Reaction , Retrospective Studies , Wilms Tumor/metabolism , Wilms Tumor/mortality , Wilms Tumor/pathology
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