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1.
Anal Bioanal Chem ; 416(13): 3161-3171, 2024 May.
Article in English | MEDLINE | ID: mdl-38558309

ABSTRACT

Since RNA is an important biomarker of many infectious pathogens, RNA detection of pathogenic organisms is crucial for disease diagnosis and environmental and food safety. By simulating the base mismatch during DNA replication, this study presents a novel three-way junction structure-mediated reverse transcription-free exponential amplification reaction (3WJ-RTF-EXPAR) for the rapid and sensitive detection of pathogen RNA. The target RNA served as a switch to initiate the reaction by forming a three-way junction (3WJ) structure with the ex-trigger strand and the ex-primer strand. The generated trigger strand could be significantly amplified through EXPAR to open the stem-loop structure of the molecular beacon to emit fluorescence signal. The proofreading activity of Vent DNA polymerase, in combination with the unique structure of 2+1 bases at the 3'-end of the ex-primer strand, could enhance the role of target RNA as a reaction switch to reduce non-specific amplification and ensure excellent specificity to differentiate target pathogen from those causing similar symptoms. Furthermore, detection of target RNA showed a detection limit of 1.0×104 copies/mL, while the time consumption was only 20 min, outperforming qRT-LAMP and qRT-PCR, the most commonly used RNA detection methods in clinical practice. All those indicates the great application prospects of this method in clinical diagnostic.


Subject(s)
Limit of Detection , Nucleic Acid Amplification Techniques , Nucleic Acid Amplification Techniques/methods , RNA, Viral/analysis , RNA, Viral/genetics , RNA, Bacterial/analysis , RNA, Bacterial/genetics , Humans
2.
Carbohydr Res ; 538: 109080, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38513464

ABSTRACT

Polysaccharides have attracted immense attention as the largest source of bioactive compounds. Its bioavailability and bioactivity can be improved by utilizing degradation enzymes to reduce their molecular weight and viscosity. In this study, a 654 bp gene encoding xylanase was screened from the genome of Bacillus altitudinis JYY-02 and overexpressed in Escherichia coli Rosetta (DE3). The recombinant xylanase with a molecular weight of 27.98 kDa was purified (11.7-fold) using Ni-NTA affinity chromatography, with a 43.6% final yield. Through molecular docking, Glu, Arg, Tyr, and Trp were found to be the main amino acids involved in the interaction between xylanase and xylobiose. The effects of pH, temperature, metal ions, and substrates on xylanase activity were determined, and the results showed that the highest catalytic activity was displayed at pH 6.5, 50 °C temperature, with Cu2+ as an activator and xylan as the substrate. The Km (substrate concentration that yields a half-maximal velocity) and Vmax (maximum velocity) of recombinant xylanase were 6.876 mg/mL and 10984.183 µmol/mg∙pr/min, respectively. The recombinant xylanase was thermostable, with 85% and 39% of the enzymatic activity retained after 1 h at 60 °C and 1 h at 90 °C, respectively. The recombinant xylanase demonstrated a significant clarifying effect on fruit juices.


Subject(s)
Bacillus , Endo-1,4-beta Xylanases , Endo-1,4-beta Xylanases/metabolism , Molecular Docking Simulation , Polysaccharides , Bacillus/genetics , Temperature , Xylans/chemistry , Hydrogen-Ion Concentration , Enzyme Stability , Cloning, Molecular , Substrate Specificity
3.
Phytopathology ; 114(3): 630-640, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38457135

ABSTRACT

Bursaphelenchus xylophilus, the pine wood nematode (PWN), is the causal agent of pine wilt disease (PWD), which causes enormous economic loss annually. According to our previous research, fomepizole, as a selective inhibitor of PWN alcohol dehydrogenase (ADH), has the potential to be a preferable lead compound for developing novel nematicides. However, the underlying molecular mechanism is still unclear. The result of molecular docking showed that the stronger interactions between fomepizole and PWN ADH at the active site of ADH were attributed to hydrogen bonds. Low-dose fomepizole had a substantial negative impact on the egg hatchability, development, oviposition, and lifespan of PWN. Transcriptome analysis indicated that 2,124 upregulated genes and 490 downregulated genes in fomepizole-treated PWN were obtained. Kyoto Encyclopedia of Genes and Genomes enrichment analysis of differentially expressed genes indicated that fomepizole could be involved in controlling PWN vitality mainly by regulating key signaling pathways, such as the ribosome, hippo signaling pathway, and lysosome. Remarkably, the results of RNA interference indicated that the downregulated serine/threonine-protein phosphatase gene (stpp) could reduce the egg hatchability, development, oviposition, and lifespan of PWN, which was closely similar to the consequences of nematodes with low-dose fomepizole treatment. In addition, the silencing of stpp resulted in weakness of PWN pathogenicity, which indicated that stpp could be a potential drug target to control PWN.


Subject(s)
Pinus , Tylenchida , Animals , Virulence , Transcriptome , Fomepizole , Xylophilus , Molecular Docking Simulation , Plant Diseases , Pinus/genetics , Phosphoprotein Phosphatases/genetics , Threonine/genetics , Serine/genetics , Tylenchida/genetics
4.
Nanomaterials (Basel) ; 13(13)2023 Jul 03.
Article in English | MEDLINE | ID: mdl-37446516

ABSTRACT

Polylactic acid (PLA) is a biodegradable polymer made from natural sources, and its electrospinning (e-spinning) nanofiber membrane doped with antibacterial ingredients is widely used in the field of medical dressings. In this research, 9 wt% of rosmarinic acid (RosA) and 0.04 wt% of graphite oxide (GO) with synergistic antibacterial activity were introduced into the e-spinning PLA precursor solution, and the obtained PLA nanofiber membrane showed good antibacterial properties and wound healing effects. At the same time, a nonionic amphiphilic polymer, polyethylene glycol (PEG), was also introduced into this system to improve the hydrophilicity of the e-spinning membrane for wound healing application. The morphological characterization showed the RosA/GO and PEG did not affect the e-spinning of PLA. The tests of mechanical performance and wettability demonstrated that PEG and RosA/GO incorporated in PLA have migrated easily to the surface of the fiber. The e-spun PLA/PEG/RosA/GO membrane showed good antibacterial activity and promoted initial wound healing quickly, which would be a promising application in wound dressing.

5.
Molecules ; 28(10)2023 May 15.
Article in English | MEDLINE | ID: mdl-37241850

ABSTRACT

Pine wood nematode (PWN), Bursaphelenchus xylophilus, is a major pathogen of pine wilt disease (PWD), which is a devastating disease affecting pine trees. Eco-friendly plant-derived nematicides against PWN have been considered as promising alternatives to control PWD. In this study, the ethyl acetate extracts of Cnidium monnieri fruits and Angelica dahurica roots were confirmed to have significant nematicidal activity against PWN. Through bioassay-guided fractionations, eight nematicidal coumarins against PWN were separately isolated from the ethyl acetate extracts of C. monnieri fruits and A. dahurica roots, and they were identified to be osthol (Compound 1), xanthotoxin (Compound 2), cindimine (Compound 3), isopimpinellin (Compound 4), marmesin (Compound 5), isoimperatorin (Compound 6), imperatorin (Compound 7), and bergapten (Compound 8) by mass and nuclear magnetic resonance (NMR) spectral data analysis. Coumarins 1-8 were all determined to have inhibitory effects on the egg hatching, feeding ability, and reproduction of PWN. Moreover, all eight nematicidal coumarins could inhibit the acetylcholinesterase (AChE) and Ca2+ ATPase of PWN. Cindimine 3 from C. monnieri fruits showed the strongest nematicidal activity against PWN, with an LC50 value of 64 µM at 72 h, and the highest inhibitory effect on PWN vitality. In addition, bioassays on PWN pathogenicity demonstrated that the eight nematicidal coumarins could effectively relieve the wilt symptoms of black pine seedlings infected by PWN. The research identified several potent botanical nematicidal coumarins for use against PWN, which could contribute to the development of greener nematicides for PWD control.


Subject(s)
Angelica , Nematoda , Pinus , Tylenchida , Animals , Cnidium , Xylophilus , Acetylcholinesterase/pharmacology , Fruit , Antinematodal Agents/pharmacology , Antinematodal Agents/chemistry , Coumarins/pharmacology , Plant Diseases
6.
Microbiol Spectr ; 10(4): e0153522, 2022 08 31.
Article in English | MEDLINE | ID: mdl-35863007

ABSTRACT

Gardenia blue (GB) is a natural blue pigment widely used in textiles and the pharmaceutical industry. The geniposide in gardenia fruits can be hydrolyzed by ß-glucosidase to form genipin, which reacts with amino acids to produce GB. In this study, a bacterial strain which secreted thermostable ß-glucosidase (EC 3.2.1.21) was isolated from soil and identified as Bacillus altitudinis JYY-02. This strain could potentially be used for GB production from geniposide by fermentation. Optimal fermentation results were achieved at pH 6.5 or 8.0 at 45°C for 45 h with additional sucrose. To obtain a large amount of ß-glucosidase, the whole genome of B. altitudinis JYY-02 was sequenced and annotated; it is 3,727,518 bp long and contains 3,832 genes. The gene encoding ß-glucosidase (bgl) in B. altitudinis JYY-02 was screened from the genome and overexpressed in Escherichia coli BL21(DE3). The recombinant ß-glucosidase was purified by affinity chromatography on a Ni Sepharose 6 fast flow (FF) column. The optimal temperature, pH, and Km values for the recombinant ß-glucosidase were 60°C, pH 5.6, and 0.331 mM, respectively, when p-nitrophenyl-ß-d-glucopyranoside (pNPG) was used as the substrate. The recombinant ß-glucosidase catalyzed the deglycosylation reaction of geniposide, which was then used to produce GB. IMPORTANCE ß-Glucosidases are enzymes capable of hydrolyzing ß-glucosidic linkages present in saccharides and glycosides and have many agricultural and industrial applications. Although they are found in all domains of living organisms, commercial ß-glucosidases are still expensive, limiting their application in industry. In the present study, a thermostable ß-glucosidase-producing strain was obtained for GB production by fermentation, engineered bacteria were constructed for preparing recombinant ß-glucosidase, and a one-step method to purify the recombinant enzyme was established. A large amount of purified ß-glucosidase was easily obtained from the engineered bacteria for industrial applications such as GB production.


Subject(s)
Bacillus , Gardenia , Bacillus/metabolism , Enzyme Stability , Escherichia coli/genetics , Escherichia coli/metabolism , Gardenia/genetics , Gardenia/metabolism , Hydrogen-Ion Concentration , Substrate Specificity , beta-Glucosidase/chemistry , beta-Glucosidase/genetics , beta-Glucosidase/metabolism
7.
Front Plant Sci ; 13: 862594, 2022.
Article in English | MEDLINE | ID: mdl-35712574

ABSTRACT

Pine wilt disease (PWD) caused by Bursaphelenchus xylophilus is considered a major threat to pine forests worldwide. Uridine diphosphate (UDP)-glycosyltransferases (UGTs) catalyze the conjugation of small lipophilic compounds with sugars and play crucial roles in the detoxification and homeostatic processes in all living organisms. We investigated the molecular characteristics and biological functions of the gene UGT440A1 that encodes UGTs in B. xylophilus. The in situ hybridization results indicated that UGT440A1 is expressed in all developmental stages of B. xylophilus, particularly in the head, intestine, and hypodermis of the second-stage of juveniles (J2), third-stage of juveniles (J3) and fourth-stage of juveniles (J4) females and in almost the whole body of J4 males and adults. Recombinant UGT440A1 was observed mainly in the inclusion bodies, and the enzyme activity assay revealed that UGT440A1 could catalyze the glycosylation reaction of two types of flavonols (kaempferol and quercetin). RNA interference (RNAi) of UGT440A1 suppressed motility, feeding, and reproduction of B. xylophilus. Furthermore, UGT440A1 knockdown caused a delay in the development of PWD symptoms in the pine seedlings inoculated with the nematodes. These results suggest that UGT440A1 is involved in the pathogenic process of B. xylophilus and the information may facilitate a better understanding of the molecular mechanism of PWD.

8.
Amino Acids ; 54(2): 229-240, 2022 Feb.
Article in English | MEDLINE | ID: mdl-34837555

ABSTRACT

It has been widely reported that the addition of trimethylglycine (betaine) decreases osmotic pressure inhibition for cell growth, leading to increased production of amino acids. However, the underlying mechanism is unclear. To determine the global metabolic differences that occur under the addition of trimethylglycine, transcriptome analysis was performed. Transcriptome analysis of Corynebacterium glutamicum JL1211 revealed that 272 genes exhibited significant changes under trimethylglycine addition. We performed Gene Ontology (GO) and KEGG enrichment pathway analyses on these differentially expressed genes (DEGs). Significantly upregulated genes were mainly involved in the regulation of ABC transporters, especially phosphate transporters and sulfur metabolism. The three phosphate transporter genes pstC, pstA and pstB were upregulated by 13.06-fold, 29.80-fold and 30.49-fold, respectively. Notably, the transcriptional levels of the cysD, cysN, cysH and sir genes were upregulated by 81.5-fold, 57.3-fold, 77.6-fold and 125.4-fold, respectively, consistent with assimilatory sulfate reduction under the addition of trimethylglycine. The upregulation of ilvBN and leuD genes might result in increased L-leucine formation. The data indicated changes in the transcriptome of C. glutamicum with trimethylglycine treatment, thus providing a mechanism supporting the application of trimethylglycine in the production of L-leucine and other amino acids by C. glutamicum strains.


Subject(s)
Corynebacterium glutamicum , Betaine/metabolism , Corynebacterium glutamicum/genetics , Corynebacterium glutamicum/metabolism , Gene Expression Profiling , Leucine/metabolism , Transcriptome
9.
J Microbiol Methods ; 194: 106390, 2022 03.
Article in English | MEDLINE | ID: mdl-34890757

ABSTRACT

Lycopene is an orange-red carotenoid, which confers a visual phenotype to assess genetic transformation of microorganisms. In this study, the lycopene synthesis pathway was constructed in engineered Escherichia coli BL21 (DE3) by transforming plasmid pET-15b-crtBEI, wherein crtB, crtE, and crtI could be expressed under the control of the T7 promoter and lacO operator and lycopene could be accumulated in the engineered bacteria upon induction by lactose. A good linear relationship was observed between the lycopene content in engineered bacterial culture and lactose concentration in the range of 4-52 g/L; using this relation, the lactose concentration in milk could be determined. This method could be used to overcome several limitations of the high-performance liquid chromatography (HPLC) method for lactose detection, such as cumbersome sample preparation and expensive detection equipment. Moreover, this method required only a clean bench, shaker, and spectrophotometer for lactose analysis. Additionally, no significant difference was observed between this method and HPLC in terms of lactose measurement in milk, indicating that this method is reasonable and simple.


Subject(s)
Lactose , Milk , Animals , Carotenoids/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Lactose/metabolism , Lycopene/metabolism
10.
Anal Chem ; 93(32): 11298-11304, 2021 08 17.
Article in English | MEDLINE | ID: mdl-34369142

ABSTRACT

Small extracellular vesicles (sEVs), often referred to as exosomes, are potential biomarkers for noninvasive cancer diagnosis. However, because of their phenotype heterogeneity, precise detection of tumor-derived sEVs is a great challenge. Herein, a dual-aptamer-assisted AND logic gate was fabricated for sensitive electrochemical detection of tumor-derived sEVs based on a cyclic enzymatic signal amplification strategy. Four different tumor-derived sEVs were used to verify the feasibility of the AND logic gate, and CCRF-CEM sEVs were successfully detected by this assay. The electrochemical assay shows a good linear response from 4 × 103 to 8 × 107 particles/µL, with a detection limit of 920 particles/µL, for CCRF-CEM sEVs, indicating potential application in accurate cancer diagnostics.


Subject(s)
Aptamers, Nucleotide , Biosensing Techniques , Exosomes , Extracellular Vesicles , Neoplasms , Humans , Neoplasms/diagnosis
11.
RSC Adv ; 11(11): 6212-6220, 2021 Feb 02.
Article in English | MEDLINE | ID: mdl-35423135

ABSTRACT

Bursaphelenchus xylophilus (B. xylophilus) is a dangerous plant pest which could result in Pine Wild Disease (PWD). To investigate the physiological activity of B. xylophilus and utilize the fluorescent properties of quantum dots, carbon quantum dots (CQDs) using glucose as precursor were synthesized through a hydrothermal reaction. The properties of the CQDs strongly depended on the reaction temperature and reaction time. The transcriptome analysis was implemented to study the molecular toxicology mechanism of CQDs on B. xylophilus. Based on the analysis results, it can be concluded that CQDs have the potential to stimulate the detoxification process and fatty acid degradation mechanism of B. xylophilus. Through observing the biodistribution of CQDs, lifespan, locomotion and egg-laying behavior of B. xylophilus, the intestine was the main target organ of the CQDs, and the CQDs could affect the locomotion and reproduction activities of B. xylophilus.

12.
Eur J Med Chem ; 203: 112506, 2020 Oct 01.
Article in English | MEDLINE | ID: mdl-32688198

ABSTRACT

With some indoles and azaindoles being successfully developed as anticancer drugs, the design and synthesis of indole and azaindole derivatives with remarkable antitumor activity has received increasing attention and significant progress has been made. This paper reviews the recent progress in the study of tumorigenesis, mechanism of actions and structure activity relationships about anticancer indole and azindole derivatives. Combining structure activity relationships and molecular targets-related knowledge, this review will help researchers design more effective, safe and cost-effective anticancer indoles and azindoles agents.


Subject(s)
Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Aza Compounds/chemistry , Drug Discovery , Indoles/chemistry , Indoles/pharmacology , Animals , Carcinogenesis/drug effects , Humans , Safety
13.
Analyst ; 145(10): 3557-3563, 2020 May 18.
Article in English | MEDLINE | ID: mdl-32309839

ABSTRACT

Facile detection of tumour-derived extracellular vesicles (EVs) is crucial to cancer diagnosis. Herein, a facile and label-free electrochemical aptasensor was fabricated to detect tumour-derived EVs based on the target-induced proximity hybridization of split aptamers. In this assay, two designed oligonucleotide probes containing fragments of a protein tyrosine kinase-7 (PTK7) aptamer were used to recognize and capture EVs containing PTK7. In the presence of target EVs, the aptamer-target ternary complex could induce proximity hybridization and form a DNA duplex on the electrode. The DNA duplex could bind more electroactive Ru(NH3)63+ through electrostatic attraction, resulting in an increased cathodic current signal. By virtue of the excellent electrochemical signal reporter RuHex, the specificity of the aptamer and proximity ligation, a facile EV electrochemical aptasensor with a detection limit of 6.607 × 105 particles per mL was realized. Furthermore, this aptasensor showed good selectivity to distinguish different tumour-derived EVs and was applied to detect EVs in complex biological samples. The proposed electrochemical aptasensor can be further extended to the detection of other EVs, thus showing great potential in clinical diagnosis.


Subject(s)
Aptamers, Nucleotide/metabolism , Biosensing Techniques/methods , Extracellular Matrix/metabolism , Cell Adhesion Molecules/metabolism , Early Detection of Cancer , Electrochemistry , HeLa Cells , Humans , Nucleic Acid Hybridization , Receptor Protein-Tyrosine Kinases/metabolism
14.
J Nematol ; 52: 1-14, 2020.
Article in English | MEDLINE | ID: mdl-32185942

ABSTRACT

Punicalagin showed significant nematotoxic activity against pine wood nematode (PWN), Bursaphelenchus xylophilus, in the authors' previous research. The authors performed high-throughput transcriptomic sequencing of punicalagin-treated nematodes to generate clues for its nematotoxic mechanism of action. The authors identified 2,575 differentially expressed genes, 1,428 of which were up-regulated and 1,147 down-regulated. Based on a comprehensive functional in silico analysis, the authors speculate that PWN may respond to the stimulus of punicalagin through phagosome, endocytosis, peroxisome and MAPK signaling pathways. In addition, punicalagin could greatly affect PWN energy metabolism including oxidative phosphorylation. The genes encoding twitchin and a nematode cuticular collagen could be crucial regulation targets of punicalagin, which might contribute to its nematotoxic activity against PWN.Punicalagin showed significant nematotoxic activity against pine wood nematode (PWN), Bursaphelenchus xylophilus, in the authors' previous research. The authors performed high-throughput transcriptomic sequencing of punicalagin-treated nematodes to generate clues for its nematotoxic mechanism of action. The authors identified 2,575 differentially expressed genes, 1,428 of which were up-regulated and 1,147 down-regulated. Based on a comprehensive functional in silico analysis, the authors speculate that PWN may respond to the stimulus of punicalagin through phagosome, endocytosis, peroxisome and MAPK signaling pathways. In addition, punicalagin could greatly affect PWN energy metabolism including oxidative phosphorylation. The genes encoding twitchin and a nematode cuticular collagen could be crucial regulation targets of punicalagin, which might contribute to its nematotoxic activity against PWN.

15.
Anal Chem ; 92(7): 5302-5310, 2020 04 07.
Article in English | MEDLINE | ID: mdl-32148013

ABSTRACT

MicroRNAs (miRNAs) in cancer cell-derived exosomes are important cancer biomarkers. Herein, a sensitive hybridization chain reaction (HCR) electrochemical assay was fabricated for the detection of exosomal microRNA-122 (miR-122). The hairpin DNA (hpDNA) probes were first immobilized on the surface of a gold electrode. In the presence of miR-122, the hairpin structure of the hpDNA could be opened and triggered the HCR through the cross-opening and hybridization of two helper DNA hairpins. Long nicked double helixes generated from HCR are used to capture more RuHex and increase the signal of differential pulse voltammetry (DPV). In this assay, the density of the hpDNA probes on the surface of the gold electrode was precisely controlled by the simultaneous immobilization of hpDNA and short 12 nucleotides single-stranded DNA (S-12), providing a very high amplification efficiency. More importantly, the false positive signal could be reduced or completely eliminated by applying exonuclease I (Exo I) before the introduction of target miR-122. Under optimal conditions, the assay offers very high sensitivity with an attomolar level detection limit, a linear range with 9 orders of magnitude, and specificity in single mismatch discrimination. This sensitive electrochemical assay could successfully evaluate the miR-122 concentration in different cancer-derived exosomes, indicating its potential use in cancer diagnostics.


Subject(s)
Biosensing Techniques , Electrochemical Techniques , Exosomes/chemistry , MicroRNAs/analysis , Nucleic Acid Hybridization , False Positive Reactions , Hep G2 Cells , Humans , MCF-7 Cells , MicroRNAs/genetics , Tumor Cells, Cultured
16.
Analyst ; 144(11): 3668-3675, 2019 Jun 07.
Article in English | MEDLINE | ID: mdl-31086892

ABSTRACT

Exosomes are non-invasive biomarkers for cancer diagnosis. Herein, we describe an electrochemiluminescent (ECL) aptasensor for the detection of exosomes from breast tumor cells. Mercaptopropionic acid (MPA)-modified Eu3+-doped CdS nanocrystals (MPA-CdS:Eu NCs) and H2O2 were used as ECL emitters and coreactant, respectively. The exosomes are recognized and captured by the CD63 aptamer, and then form a G-quadruplex/hemin DNAzyme, which efficiently catalyzes the decomposition of H2O2, resulting in the decreased ECL signal of MPA-CdS:Eu NCs. The exosomes from breast tumor cells (MCF-7 cells) can be detected in the range of 3.4 × 105 to 1.7 × 108 particles per mL. The limit of detection (LOD) was estimated to be 7.41 × 104 particles per mL at a signal-to-noise ratio of 3. The aptasensor has been successfully used to detect exosomes in the serum.


Subject(s)
Aptamers, Nucleotide/chemistry , DNA, Catalytic/chemistry , DNA/chemistry , Exosomes/chemistry , Hemin/chemistry , Metal Nanoparticles/chemistry , 3-Mercaptopropionic Acid/chemistry , Aptamers, Nucleotide/metabolism , Biomarkers/blood , Biomarkers/metabolism , Biosensing Techniques/methods , Breast Neoplasms/diagnosis , Cadmium Compounds/chemistry , Carbon/chemistry , DNA/metabolism , DNA, Catalytic/genetics , DNA, Catalytic/metabolism , Electrochemical Techniques/instrumentation , Electrochemical Techniques/methods , Electrodes , Europium/chemistry , Exosomes/metabolism , G-Quadruplexes , Hemin/metabolism , Humans , Hydrogen Peroxide/chemistry , Limit of Detection , Luminescent Measurements/methods , MCF-7 Cells , Sulfides/chemistry
17.
Bioprocess Biosyst Eng ; 41(10): 1509-1518, 2018 Oct.
Article in English | MEDLINE | ID: mdl-30062600

ABSTRACT

Betaine can act as a stress protectant, methyl donor, or enzyme stabilizer in vitro for the biosynthesis of structurally complex compounds. The performances of betaine type and concentration on the metabolic processes of Escherichia coli JLTHR in a 5-L fermentor were investigated. The results showed that the maximum L-threonine production of 127.3 g/L and glucose conversion percentage of 58.12% was obtained fed with the glucose solution containing 2 g/L betaine hydrochloride, which increased by 14.5 and 6.87% more compared to that of the control, respectively. This study presents an analysis of the metabolic fluxes of E. coli JLTHR for the production of L-threonine with betaine supplementation. When betaine was fed into the fermentation culture medium, the metabolic flux entering into the pentose phosphate pathway (HMP) and biosynthesis route of L-threonine increased by 57.3 and 10.1%, respectively. In conclusion, exogenous addition of betaine was validated to be a feasible and efficacious approach to improve L-threonine production.


Subject(s)
Betaine/pharmacology , Bioreactors , Escherichia coli/growth & development , Pentose Phosphate Pathway/drug effects , Threonine/biosynthesis , Betaine/metabolism
18.
Analyst ; 143(14): 3353-3359, 2018 Jul 09.
Article in English | MEDLINE | ID: mdl-29893757

ABSTRACT

In this paper, a dual-signal ratiometric electrochemiluminescence (ECL) assay was developed to detect human DNA (cytosine-5)-methyltransferase1 (DNMT1) activity. Mercaptopropionic acid (MPA)-modified Eu3+-doped CdS nanocrystals (MPA-CdS:Eu NCs) and luminol were used as two different ECL emitters, which showed ECL signals at different electrochemical potentials. The resultant ECL peaks exhibited opposite trends in the DNMT1 system. According to the ratio of the ECL responses of CdS to luminol, the DNMT1 activity was detected in the range of 1.0-30.0 U mL-1 in buffer solution. The limit of detection (LOD) was estimated to be 0.07 U mL-1 at a signal-to-noise ratio of 3. The assay was extended to detect the DNMT1 activity from crude lysates of cancer cells, along with the effect of DNMT1 inhibitors such as 5-aza and 5-aza-2'-dC.


Subject(s)
DNA (Cytosine-5-)-Methyltransferase 1/metabolism , Electrochemical Techniques , Luminescent Measurements , Nanoparticles , Cadmium Compounds , DNA (Cytosine-5-)-Methyltransferase 1/antagonists & inhibitors , Humans , Limit of Detection , Luminol , Signal-To-Noise Ratio
19.
J Nematol ; 50(4): 559-568, 2018.
Article in English | MEDLINE | ID: mdl-31094158

ABSTRACT

The ethanol extracts from the roots of Angelica pubescens Maxim. f. biserrata Shan et Yuan was toxic against the pine wood nematode Bursaphelenchus xylophilus. The ethyl acetate-soluble fraction derived from this extract increased its potency with a mortality of 95.25% in 72 hr at 1.0 mg/mL. Four nematotoxic coumarins were obtained from the ethyl acetate extract by bioassay-guided isolation. These were identified as osthole 1, columbianadin 2, bergapten 3 and xanthotoxin 4 by mass and nuclear magnetic resonance spectral data analysis. The LC50 values against B. xylophilus in 72 hr were 489.17, 406.74, 430.08, and 435.66 µM, respectively. These compounds also altered the smooth morphology of the B. xylophilus exoskeleton to a rough and pitted appearance as visualized by electron microscopy. The coumarins 1-4 possessed significant acetylcholinesterase inhibitory activities but had negligible effects on amylase and cellulase. This research provides additional clues to the nematotoxic mechanism of coumarins against the pine wood nematode B. xylophilus. This work will assist in the development of coumarin nematicides with enhanced activity using molecular modifications of the core coumarin structure.The ethanol extracts from the roots of Angelica pubescens Maxim. f. biserrata Shan et Yuan was toxic against the pine wood nematode Bursaphelenchus xylophilus. The ethyl acetate-soluble fraction derived from this extract increased its potency with a mortality of 95.25% in 72 hr at 1.0 mg/mL. Four nematotoxic coumarins were obtained from the ethyl acetate extract by bioassay-guided isolation. These were identified as osthole 1, columbianadin 2, bergapten 3 and xanthotoxin 4 by mass and nuclear magnetic resonance spectral data analysis. The LC50 values against B. xylophilus in 72 hr were 489.17, 406.74, 430.08, and 435.66 µM, respectively. These compounds also altered the smooth morphology of the B. xylophilus exoskeleton to a rough and pitted appearance as visualized by electron microscopy. The coumarins 1-4 possessed significant acetylcholinesterase inhibitory activities but had negligible effects on amylase and cellulase. This research provides additional clues to the nematotoxic mechanism of coumarins against the pine wood nematode B. xylophilus. This work will assist in the development of coumarin nematicides with enhanced activity using molecular modifications of the core coumarin structure.

20.
Pestic Biochem Physiol ; 135: 64-68, 2017 Jan.
Article in English | MEDLINE | ID: mdl-28043333

ABSTRACT

The ethanol extract of Punica granatum L. rind was tested to show significant nematicidal activity against pine wood nematode. Three nematicidal compounds were obtained from the ethanol extract by bioassay-guided fractionation and identified as punicalagin 1, punicalin 2, and corilagin 3 by mass and nuclear magnetic resonance spectral data analysis. Punicalagin 1 was most active against PWN among the purified compounds with the LC50 value of 307.08µM in 72h. According to the enzyme assays in vitro, punicalagin 1 could inhibit the activity of acetylcholinesterase, amylase and cellulase from PWN with IC50 value of 0.60mM, 0.96mM and 1.24mM, respectively. The morphological structures of PWNs treated by punicalagin 1 were greatly changed. These physiological effects of punicalagin 1 on PWN may helpful to elucidate its nematicidal mechanism.


Subject(s)
Antinematodal Agents/toxicity , Hydrolyzable Tannins/toxicity , Lythraceae , Plant Extracts/toxicity , Tylenchida/drug effects , Acetylcholinesterase/metabolism , Amylases/antagonists & inhibitors , Animals , Antinematodal Agents/chemistry , Cellulase/antagonists & inhibitors , Cholinesterase Inhibitors/chemistry , Cholinesterase Inhibitors/toxicity , Glucosides/analysis , Glucosides/toxicity , Hydrolyzable Tannins/analysis , Microscopy, Electron, Scanning , Microscopy, Electron, Transmission , Plant Extracts/chemistry , Tylenchida/enzymology , Tylenchida/ultrastructure
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