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1.
PeerJ ; 12: e17466, 2024.
Article in English | MEDLINE | ID: mdl-38827284

ABSTRACT

Background: Tomato (Solanum lycopersicum) is an annual or perennial herb that occupies an important position in daily agricultural production. It is an essential food crop for humans and its ripening process is regulated by a number of genes. S-adenosyl-l-homocysteine hydrolase (AdoHcyase, EC 3.3.1.1) is widespread in organisms and plays an important role in regulating biological methylation reactions. Previous studies have revealed that transgenic tomato that over-express SlSAHH2 ripen earlier than the wild-type (WT). However, the differences in metabolites and the mechanisms driving how these differences affect the ripening cycle are unclear. Objective: To investigate the effects of SlSAHH2 on metabolites in over-expressed tomato and WT tomato. Methods: SlSAHH2 over-expressed tomato fruit (OE-5# and OE-6#) and WT tomato fruit at the breaker stage (Br) were selected for non-targeted metabolome analysis. Results: A total of 733 metabolites were identified by mass spectrometry using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database and the Human Metabolome database (HMDB). The metabolites were divided into 12 categories based on the superclass results and a comparison with the HMDB. The differences between the two databases were analyzed by PLS-DA. Based on a variable important in projection value >1 and P < 0.05, 103 differential metabolites were found between tomato variety OE-5# and WT and 63 differential metabolites were found between OE-6# and WT. These included dehydrotomatine, L-serine, and gallic acid amongst others. Many metabolites are associated with fruit ripening and eight common metabolites were found between the OE-5# vs. WT and OE-6# vs. WT comparison groups. The low L-tryptophan expression in OE-5# and OE-6# is consistent with previous reports that its content decreases with fruit ripening. A KEGG pathway enrichment analysis of the significantly different metabolites revealed that in the OE-5# and WT groups, up-regulated metabolites were enriched in 23 metabolic pathways and down-regulated metabolites were enriched in 11 metabolic pathways. In the OE-6# and WT groups, up-regulated metabolites were enriched in 29 pathways and down-regulated metabolites were enriched in six metabolic pathways. In addition, the differential metabolite changes in the L-serine to flavonoid transformation metabolic pathway also provide evidence that there is a phenotypic explanation for the changes in transgenic tomato. Discussion: The metabolomic mechanism controlling SlSAHH2 promotion of tomato fruit ripening has been further elucidated.


Subject(s)
Fruit , Solanum lycopersicum , Solanum lycopersicum/metabolism , Solanum lycopersicum/genetics , Fruit/metabolism , Fruit/genetics , Plants, Genetically Modified/genetics , Gene Expression Regulation, Plant , Plant Proteins/genetics , Plant Proteins/metabolism , Adenosylhomocysteinase/metabolism , Adenosylhomocysteinase/genetics , Metabolome , Metabolomics
2.
Sci Rep ; 14(1): 5078, 2024 03 01.
Article in English | MEDLINE | ID: mdl-38429394

ABSTRACT

Ferroptosis is a recently identified form of programmed cell death that plays an important role in the pathophysiological process of osteoarthritis (OA). Herein, we investigated the protective effect of moderate mechanical stress on chondrocyte ferroptosis and further revealed the internal molecular mechanism. Intra-articular injection of sodium iodoacetate (MIA) was conducted to induce the rat model of OA in vivo, meanwhile, interleukin-1 beta (IL-1ß) was treated to chondrocytes to induce the OA cell model in vitro. The OA phenotype was analyzed by histology and microcomputed tomography, the ferroptosis was analyzed by transmission electron microscope and immunofluorescence. The expression of ferroptosis and cartilage metabolism-related factors was analyzed by immunohistochemical and Western blot. Animal experiments revealed that moderate-intensity treadmill exercise could effectively reduce chondrocyte ferroptosis and cartilage matrix degradation in MIA-induced OA rats. Cell experiments showed that 4-h cyclic tensile strain intervention could activate Nrf2 and inhibit the NF-κB signaling pathway, increase the expression of Col2a1, GPX4, and SLC7A11, decrease the expression of MMP13 and P53, thereby restraining IL-1ß-induced chondrocyte ferroptosis and degeneration. Inhibition of NF-κB signaling pathway relieved the chondrocyte ferroptosis and degeneration. Meanwhile, overexpression of NF-κB by recombinant lentivirus reversed the positive effect of CTS on chondrocytes. Moderate mechanical stress could activate the Nrf2 antioxidant system, inhibit the NF-κB p65 signaling pathway, and inhibit chondrocyte ferroptosis and cartilage matrix degradation by regulating P53, SLC7A11, and GPX4.


Subject(s)
Ferroptosis , Osteoarthritis , Stress, Mechanical , Animals , Rats , Chondrocytes/metabolism , Interleukin-1beta/metabolism , NF-E2-Related Factor 2/metabolism , NF-kappa B/metabolism , NF-kappa B/physiology , Osteoarthritis/metabolism , Osteoarthritis/pathology , Signal Transduction , Tumor Suppressor Protein p53/metabolism , X-Ray Microtomography , Transcription Factor RelA/metabolism , Transcription Factor RelA/physiology , Phospholipid Hydroperoxide Glutathione Peroxidase/metabolism , Phospholipid Hydroperoxide Glutathione Peroxidase/physiology
3.
Opt Express ; 29(5): 6737-6755, 2021 Mar 01.
Article in English | MEDLINE | ID: mdl-33726188

ABSTRACT

With the rapid development of space division multiplexing (SDM) and flexible grid technology, the problem of resource allocation in optical network becomes much more complicated. Although there emerge a substantial number of works about link protection or restoration in SDM-EONs mesh networks, the topic of survivability is dug deeper in this work. It is acknowledged that protection schemes based on ring covers bring the advantages of shorter restoration time and lower costs. However, the RSCA problem in SDM-EON for link protection based on ring covers has rarely been investigated. To enhance the survivability of SDM-EON and make the best use of ring covers, we initially select a set of rings for the protection of all the links in a network topology according to constrains, aiming at taking full advantages of network resources. After that, we propose an algorithm to recover the traffic which will break off under link failures, basing on the set of rings. At the end of this protection scheme, we arrange the resources fulfilling the constrains of spectrum contiguity and core continuity constrains by using several different algorithms considering physical impairment. Based on the allocation in both spacial and spectral dimensions, our algorithms achieve better results of survivability. According to the simulations conducted for the evaluation of the proposed algorithms, our algorithms manage to recover at least 72.8% of traffic when the traffic request number is set to be 1000.

4.
Environ Sci Pollut Res Int ; 22(15): 11478-87, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25821087

ABSTRACT

Thallium (Tl) pollution in agricultural areas can pose hidden danger to humans, as food consumption is the key exposure pathway of Tl. Owing to the extreme toxicity of Tl, removal of Tl from soil becomes necessary to minimize the Tl-related health effects. Phytoremediation is a cost-effective method to remove heavy metals from soil, but not all plants are appropriate for this purpose. Here, the ability of Solanum nigrum L., commonly known as black nightshade, to remediate Tl-contaminated soil was evaluated. The accumulation of Tl in different organs of S. nigrum was measured under both field and greenhouse conditions. Additionally, the growth and maximal quantum efficiency of photosystem II (Fv/Fm) under different Tl concentrations (1, 5, 10, 15, and 20 mg kg(-1)) were examined after 4-month pot culture. Under both field and greenhouse conditions, Tl accumulated in S. nigrum was positively correlated with Tl concentration in the soil. Thallium mostly accumulated in the root, and bioconcentration factor was greater than 1, indicating the good capability of S. nigrum to extract Tl. Nonetheless, the growth and Fv/Fm of S. nigrum were reduced at high Tl concentration (>10 mg kg(-1)). Given the good tolerance, fast growth, high accumulation, and global distribution, we propose that S. nigrum is a competent candidate to remediate moderately Tl-contaminated soil (<10 mg kg(-1)) without causing far-reaching ecological consequences.


Subject(s)
Soil Pollutants/metabolism , Solanum nigrum/metabolism , Thallium/metabolism , Agriculture , Biodegradation, Environmental , Humans , Plant Roots/metabolism , Soil/chemistry , Soil Pollutants/analysis , Solanum nigrum/growth & development , Thallium/analysis
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