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1.
Physiol Meas ; 43(10)2022 10 31.
Article in English | MEDLINE | ID: mdl-35705072

ABSTRACT

Objective.Automatic detection of arrhythmia based on electrocardiogram (ECG) plays a critical role in early prevention and diagnosis of cardiovascular diseases. With the increase in widely available digital ECG data and the development of deep learning, multi-class arrhythmia classification based on automatic feature extraction of ECG has become increasingly attractive. However, the majority of studies cannot accept varied-length ECG signals and have limited performance in detecting multi-class arrhythmias.Approach.In this study, we propose a multi-branch signal fusion network (MBSF-Net) for multi-label classification of arrhythmia in 12-lead varied-length ECG. Our model utilizes the complementary power between different structures, which include Inception with depthwise separable convolution (DWS-Inception), spatial pyramid pooling (SPP) Layer, and multi-scale fusion Resnet (MSF-Resnet). The proposed method can extract features from each lead of 12-lead ECG recordings separately and then effectively fuse the features of each lead by integrating multiple convolution kernels with different receptive fields, which can achieve the information of complementation between different angles of the ECG signal. In particular, our model can accept 12-lead ECG signals of arbitrary length.Main results.The experimental results show that our model achieved an overall classification F1 score of 83.8% in the 12-lead ECG data of CPSC-2018. In addition, the F1 score of the MBSF-Net performed best among the MBF-Nets which are removed the SPP layer from MBSF-Net. In comparison with the latest ECG classification algorithms, the proposed model can be applied in varied-length signals and has an excellent performance, which not only can fully retain the integrity of the original signals, but also eliminates the cropping/padding signal beforehand when dealing with varied-length signal database.Significance.MBSF-Net provides an end-to-end multi-label classification model with outperfom performance, which allows detection of disease in varied-length signals without any additional cropping/padding. Moreover, our research is beneficial to the development of computer-aided diagnosis.


Subject(s)
Electrocardiography , Neural Networks, Computer , Humans , Arrhythmias, Cardiac/diagnosis , Algorithms , Diagnosis, Computer-Assisted , Signal Processing, Computer-Assisted
2.
Proc Natl Acad Sci U S A ; 118(14)2021 04 06.
Article in English | MEDLINE | ID: mdl-33785600

ABSTRACT

The contraction of heart cells is controlled by the intermolecular signaling between L-type Ca2+ channels (LCCs) and ryanodine receptors (RyRs), and the nanodistance between them depends on the interaction between junctophilin-2 (JPH2) in the sarcoplasmic reticulum (SR) and caveolin-3 (CAV3) in the transversal tubule (TT). In heart failure, decreased expression of JPH2 compromises LCC-RyR communication leading to deficient blood-pumping power. In the present study, we found that JPH2 and CAV3 transcription was concurrently regulated by serum response factor (SRF) and myocardin. In cardiomyocytes from torpid ground squirrels, compared with those from euthermic counterparts, myocardin expression was up-regulated, which boosted both JPH2 and CAV3 expression. Transmission electron microscopic imaging showed that the physical coupling between TTs and SRs was tightened during hibernation and after myocardin overexpression. Confocal Ca2+ imaging under the whole-cell patch clamp condition revealed that these changes enhanced the efficiency of LCC-RyR intermolecular signaling and fully compensated the adaptive down-regulation of LCCs, maintaining the power of heart contraction while avoiding the risk of calcium overload during hibernation. Our finding not only revealed an essential molecular mechanism underlying the survival of hibernating mammals, but also demonstrated a "reverse model of heart failure" at the molecular level, suggesting a strategy for treating heart diseases.


Subject(s)
Calcium Signaling , Hibernation , Myocytes, Cardiac/metabolism , Animals , Caveolins/genetics , Caveolins/metabolism , Cells, Cultured , Excitation Contraction Coupling , Membrane Proteins/genetics , Membrane Proteins/metabolism , Nuclear Proteins/blood , Nuclear Proteins/metabolism , Sciuridae , Trans-Activators/blood , Trans-Activators/metabolism
3.
Cardiovasc Res ; 116(13): 2069-2080, 2020 11 01.
Article in English | MEDLINE | ID: mdl-32031586

ABSTRACT

AIMS: ß-adrenergic receptors (ßARs) play pivotal roles in regulating cardiac excitation-contraction (E-C) coupling. Global signalling of ß1ARs up-regulates both the influx of Ca2+ through sarcolemmal L-type Ca2+ channels (LCCs) and the release of Ca2+ from the sarcoplasmic reticulum (SR) through the ryanodine receptors (RyRs). However, we recently found that ß2AR stimulation meditates 'offside compartmentalization', confining ß1AR signalling into subsarcolemmal nanodomains without reaching SR proteins. In the present study, we aim to investigate the new question, whether and how compartmentalized ß1AR signalling regulates cardiac E-C coupling. METHODS AND RESULTS: By combining confocal Ca2+ imaging and patch-clamp techniques, we investigated the effects of compartmentalized ßAR signalling on E-C coupling at both cellular and molecular levels. We found that simultaneous activation of ß2 and ß1ARs, in contrast to global signalling of ß1ARs, modulated neither the amplitude and spatiotemporal properties of Ca2+ sparks nor the kinetics of the RyR response to LCC Ca2+ sparklets. Nevertheless, by up-regulating LCC current, compartmentalized ß1AR signalling synchronized RyR Ca2+ release and increased the functional reserve (stability margin) of E-C coupling. In circumstances of briefer excitation durations or lower RyR responsivity, compartmentalized ßAR signalling, by increasing the intensity of Ca2+ triggers, helped stabilize the performance of E-C coupling and enhanced the Ca2+ transient amplitude in failing heart cells. CONCLUSION: Given that compartmentalized ßAR signalling can be induced by stress-associated levels of catecholamines, our results revealed an important, yet unappreciated, heart regulation mechanism that is autoadaptive to varied stress conditions.


Subject(s)
Calcium Channels, L-Type/metabolism , Calcium Signaling , Cardiomegaly/metabolism , Excitation Contraction Coupling , Myocardial Contraction , Myocytes, Cardiac/metabolism , Receptors, Adrenergic, beta-1/metabolism , Action Potentials , Adrenergic Agonists/pharmacology , Animals , Calcium Signaling/drug effects , Cardiomegaly/physiopathology , Computer Simulation , Disease Models, Animal , Excitation Contraction Coupling/drug effects , Kinetics , Male , Microscopy, Confocal , Models, Cardiovascular , Myocardial Contraction/drug effects , Myocytes, Cardiac/drug effects , Rats, Sprague-Dawley , Receptors, Adrenergic, beta-1/drug effects , Receptors, Adrenergic, beta-2/metabolism , Ryanodine Receptor Calcium Release Channel/metabolism
4.
J Imaging ; 6(7)2020 Jul 13.
Article in English | MEDLINE | ID: mdl-34460662

ABSTRACT

Analysis of colonoscopy images plays a significant role in early detection of colorectal cancer. Automated tissue segmentation can be useful for two of the most relevant clinical target applications-lesion detection and classification, thereby providing important means to make both processes more accurate and robust. To automate video colonoscopy analysis, computer vision and machine learning methods have been utilized and shown to enhance polyp detectability and segmentation objectivity. This paper describes a polyp segmentation algorithm, developed based on fully convolutional network models, that was originally developed for the Endoscopic Vision Gastrointestinal Image Analysis (GIANA) polyp segmentation challenges. The key contribution of the paper is an extended evaluation of the proposed architecture, by comparing it against established image segmentation benchmarks utilizing several metrics with cross-validation on the GIANA training dataset. Different experiments are described, including examination of various network configurations, values of design parameters, data augmentation approaches, and polyp characteristics. The reported results demonstrate the significance of the data augmentation, and careful selection of the method's design parameters. The proposed method delivers state-of-the-art results with near real-time performance. The described solution was instrumental in securing the top spot for the polyp segmentation sub-challenge at the 2017 GIANA challenge and second place for the standard image resolution segmentation task at the 2018 GIANA challenge.

5.
Bioorg Med Chem Lett ; 30(1): 126662, 2020 01 01.
Article in English | MEDLINE | ID: mdl-31784322

ABSTRACT

Starting from easy accessible pyrazoletetrahydropyran acetals, a series of new pyrazolone spirocyclohexadienone derivatives were synthesized and assayed for antitumor activity. Compound 10s was identified to possess good antitumor activity. It could induce MDA-MB-231 cancer cell apoptosis in a concentration dependent manner and arrest the cell cycle progression mainly at the G1 phase.


Subject(s)
Antineoplastic Agents/therapeutic use , Neoplasms/drug therapy , Pyrazolones/therapeutic use , Antineoplastic Agents/pharmacology , Humans , Molecular Structure , Pyrazolones/pharmacology , Structure-Activity Relationship
6.
Circ Arrhythm Electrophysiol ; 11(8): e005913, 2018 08.
Article in English | MEDLINE | ID: mdl-30354313

ABSTRACT

Background Papillary muscles are an important source of ventricular tachycardia (VT). Yet little is known about the role of the right ventricular (RV) endocavity structure, the moderator band (MB). The aim of this study was to determine the characteristics of the MB that may predispose to arrhythmia substrates. Methods Ventricular wedge preparations with intact MBs were studied from humans (n=2) and sheep (n=15; 40-50 kg). RV endocardium was optically mapped, and electrical recordings were measured along the MB and septum. S1S2 pacing of the RV free wall, MB, or combined S1-RV S2-MB sites were assessed. Human (n=2) and sheep (n=4) MB tissue constituents were assessed histologically. Results The MB structure was remarkably organized as 2 excitable, yet uncoupled compartments of myocardium and Purkinje. In humans, action potential duration heterogeneity between MB and RV myocardium was found (324.6±12.0 versus 364.0±8.4 ms; P<0.0001). S1S2-MB pacing induced unidirectional propagation via MB myocardium, permitting sustained macroreentrant VT. In sheep, the incidence of VT for RV, MB, and S1-RV S2-MB pacing was 1.3%, 5.1%, and 10.3%. Severing the MB led to VT termination, confirming a primary arrhythmic role. Inducible preparations had shorter action potential duration in the MB than RV (259.3±45.2 versus 300.7±38.5 ms; P<0.05), whereas noninducible preparations showed no difference (312.0±30.3 versus 310.0±24.6 ms, respectively). Conclusions The MB presents anatomic and electrical compartmentalization between myocardium and Purkinje fibers, providing a substrate for macroreentry. The vulnerability to sustain VT via this mechanism is dependent on MB structure and action potential duration gradients between the RV free wall and MB.


Subject(s)
Action Potentials , Heart Rate , Papillary Muscles/physiopathology , Tachycardia, Ventricular/etiology , Animals , Cardiac Pacing, Artificial , Computer Simulation , Electrophysiologic Techniques, Cardiac , Humans , In Vitro Techniques , Models, Cardiovascular , Myocardium/pathology , Papillary Muscles/pathology , Purkinje Fibers/physiopathology , Sheep, Domestic , Tachycardia, Ventricular/diagnosis , Tachycardia, Ventricular/physiopathology , Time Factors , Voltage-Sensitive Dye Imaging
7.
Cardiovasc Res ; 113(3): 332-342, 2017 03 01.
Article in English | MEDLINE | ID: mdl-28077437

ABSTRACT

Aims: The heart contraction is controlled by the Ca2+-induced Ca2+ release (CICR) between L-type Ca2+ channels and ryanodine receptors (RyRs). The FK506-binding protein FKBP12.6 binds to RyR subunits, but its role in stabilizing RyR function has been debated for long. Recent reports of high-resolution RyR structure show that the HD2 domain that binds to the SPRY2 domain of neighbouring subunit in FKBP-bound RyR1 is detached and invisible in FKBP-null RyR2. The present study was to test the consequence of FKBP12.6 absence on the in situ activation of RyR2. Methods and results: Using whole-cell patch-clamp combined with confocal imaging, we applied a near threshold depolarization to activate a very small fraction of LCCs, which in turn activated RyR Ca2+ sparks stochastically. FKBP12.6-knockout and FK506/rapamycin treatments increased spark frequency and LCC-RyR coupling fidelity without altering LCC open probability. Neither FK506 nor rapamycin further altered LCC-RyR coupling fidelity in FKBP12.6-knockout cells. In loose-seal patch-clamp experiments, the LCC-RyR signalling kinetics, indexed by the delay for a LCC sparklet to trigger a RyR spark, was accelerated after FKBP12.6 knockout and FK506/rapamycin treatments. These results demonstrated that RyRs became more sensitive to Ca2+ triggers without FKBP12.6. Isoproterenol (1 µM) further accelerated the LCC-RyR signalling in FKBP12.6-knockout cells. The synergistic sensitization of RyRs by catecholaminergic signalling and FKBP12.6 dysfunction destabilized the CICR system, leading to chaotic Ca2+ waves and ventricular arrhythmias. Conclusion: FKBP12.6 keeps the RyRs from over-sensitization, stabilizes the potentially regenerative CICR system, and thus may suppress the life-threatening arrhythmogenesis.


Subject(s)
Arrhythmias, Cardiac/metabolism , Calcium Channels, L-Type/metabolism , Calcium Signaling , Myocytes, Cardiac/metabolism , Receptor Cross-Talk , Ryanodine Receptor Calcium Release Channel/metabolism , Tacrolimus Binding Proteins/deficiency , Animals , Arrhythmias, Cardiac/genetics , Arrhythmias, Cardiac/physiopathology , Arrhythmias, Cardiac/prevention & control , Calcium Channels, L-Type/chemistry , Calcium Channels, L-Type/drug effects , Calcium Signaling/drug effects , Genotype , Isoproterenol/pharmacology , Kinetics , Male , Membrane Potentials , Mice, Knockout , Microscopy, Confocal , Models, Molecular , Myocytes, Cardiac/drug effects , Patch-Clamp Techniques , Phenotype , Protein Binding , Protein Interaction Domains and Motifs , Receptor Cross-Talk/drug effects , Ryanodine Receptor Calcium Release Channel/chemistry , Ryanodine Receptor Calcium Release Channel/drug effects , Sirolimus/pharmacology , Stochastic Processes , Tacrolimus/pharmacology , Tacrolimus Binding Proteins/antagonists & inhibitors , Tacrolimus Binding Proteins/chemistry , Tacrolimus Binding Proteins/genetics
8.
Sci Bull (Beijing) ; 62(19): 1295-1303, 2017 Oct 15.
Article in English | MEDLINE | ID: mdl-36659291

ABSTRACT

The elementary Ca2+ release events, Ca2+ sparks, has been found for a quarter of century. However, the molecular regulation of the spark generator, the ryanodine receptor (RyR) on the sarcoplasmic reticulum, remains obscure. Although each subunit of the RyR homotetramer has a site for FK506-binding protein (FKBP), the role of FKBPs in modifying RyR Ca2+ sparks has been debated for long. One of the reasons behind the controversy is that most previous studies detect spontaneous sparks, where the mixture with out-of-focus events and local wavelets prevents an accurate characterization of Ca2+ sparks. In the present study, we detected Ca2+ sparks triggered by single L-type Ca2+ channels (LCCs) under loose-seal patch clamp conditions in FK506-treated or FKBP12.6 knockout cardiomyocytes. We found that FKBP dissociation both by FK506 and by rapamycin decreased the Ca2+ spark amplitude in ventricular cardiomyocytes. This change was neither due to decreased releasable Ca2+ in the sarcoplasmic reticulum, nor explained by changed RyR sensitivity. Actually FK506 increased the LCC-RyR coupling probability and curtailed the latency for an LCC to trigger a RyR Ca2+ spark. FKBP12.6 knockout had similar effects as FK506/rapamycin treatment, indicating that the decreased spark amplitude was attributable to the dissociation of FKBP12.6 rather than FKBP12. We also explained how decreased amplitude of spontaneous sparks after FKBP dissociation sometimes appears to be increased or unchanged due to inappropriate data processing. Our results provided firm evidence that without the inter-RyR coordination by functional FKBP12.6, the RyR recruitment during a Ca2+ spark would be compromised despite the sensitization of individual RyRs.

9.
Stem Cells ; 33(2): 615-21, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25263397

ABSTRACT

Mesenchymal stem cells (MSCs) are multipotential stem cells residing in the bone marrow. Several studies have shown that mechanical stimulation modulates MSC differentiation through mobilization of second messengers, but the mechanism of mechanotransduction remains poorly understood. In this study, using fluorescence and laser confocal microcopy as well as patch-clamp techniques, we identified the transient receptor potential melastatin type 7 (TRPM7) channel as the key channel involved in mechanotransduction in bone marrow MSCs. TRPM7 knockdown completely abolished the pressure-induced cytosolic Ca(2+) increase and pressure-induced osteogenesis. TRPM7 directly sensed membrane tension, independent of the cytoplasm and the integrity of cytoskeleton. Ca(2+) influx through TRPM7 further triggered Ca(2+) release from the inositol trisphosphate receptor type 2 on the endoplasmic reticulum and promoted NFATc1 nuclear localization and osteogenesis. These results identified a central role of TRPM7 in MSC mechanical stimulation-induced osteogenesis.


Subject(s)
Bone Marrow Cells/metabolism , Mechanotransduction, Cellular/physiology , Mesenchymal Stem Cells/metabolism , Osteogenesis , Pressure , Protein Serine-Threonine Kinases/metabolism , TRPM Cation Channels/metabolism , Bone Marrow Cells/cytology , Cells, Cultured , Humans , Mesenchymal Stem Cells/cytology
10.
Appl Phys Lett ; 102(4): 41111, 2013 Jan 28.
Article in English | MEDLINE | ID: mdl-23460758

ABSTRACT

We demonstrate experimentally that in photonic crystal sensors with a side-coupled cavity-waveguide configuration, group velocity of the propagating mode in the coupled waveguide at the frequency of the resonant mode plays an important role in enhancing the sensitivity. In linear L13 photonic crystal microcavities, with nearly same resonance mode quality factors ∼7000 in silicon-on-insulator devices, sensitivity increased from 57 nm/RIU to 66 nm/RIU as group index in the coupled waveguide increased from 10.2 to 13.2. Engineering for highest sensitivity in such planar integrated sensors, thus, requires careful slow light design for optimized sensor sensitivity.

11.
Circ Res ; 112(4): 601-5, 2013 Feb 15.
Article in English | MEDLINE | ID: mdl-23307820

ABSTRACT

RATIONALE: During the transition from compensated hypertrophy to heart failure, the signaling between L-type Ca(2+) channels in the cell membrane/T-tubules and ryanodine receptors in the sarcoplasmic reticulum becomes defective, partially because of the decreased expression of a T-tubule-sarcoplasmic reticulum anchoring protein, junctophilin-2. MicroRNA (miR)-24, a junctophilin-2 suppressing miR, is upregulated in hypertrophied and failing cardiomyocytes. OBJECTIVE: To test whether miR-24 suppression can protect the structural and functional integrity of L-type Ca(2+) channel-ryanodine receptor signaling in hypertrophied cardiomyocytes. METHODS AND RESULTS: In vivo silencing of miR-24 by a specific antagomir in an aorta-constricted mouse model effectively prevented the degradation of heart contraction, but not ventricular hypertrophy. Electrophysiology and confocal imaging studies showed that antagomir treatment prevented the decreases in L-type Ca(2+) channel-ryanodine receptor signaling fidelity/efficiency and whole-cell Ca(2+) transients. Further studies showed that antagomir treatment stabilized junctophilin-2 expression and protected the ultrastructure of T-tubule-sarcoplasmic reticulum junctions from disruption. CONCLUSIONS: MiR-24 suppression prevented the transition from compensated hypertrophy to decompensated hypertrophy, providing a potential strategy for early treatment against heart failure.


Subject(s)
Calcium Signaling/drug effects , Excitation Contraction Coupling/drug effects , Heart Failure/prevention & control , Hypertrophy, Left Ventricular/drug therapy , MicroRNAs/antagonists & inhibitors , Myocytes, Cardiac/drug effects , Oligonucleotides, Antisense/therapeutic use , Animals , Aortic Stenosis, Subvalvular/complications , Calcium Channels, L-Type/physiology , Calcium Signaling/physiology , Disease Progression , Drug Evaluation, Preclinical , Gene Expression Regulation , Heart Failure/etiology , Heart Failure/metabolism , Hypertrophy, Left Ventricular/complications , Hypertrophy, Left Ventricular/physiopathology , Male , Membrane Proteins/antagonists & inhibitors , Mice , Mice, Inbred C57BL , MicroRNAs/genetics , MicroRNAs/physiology , Models, Cardiovascular , Myocardial Contraction/drug effects , Myocytes, Cardiac/metabolism , Myocytes, Cardiac/ultrastructure , Oligonucleotides, Antisense/pharmacology , Ryanodine Receptor Calcium Release Channel/physiology , Sarcoplasmic Reticulum/drug effects , Sarcoplasmic Reticulum/physiology , Sarcoplasmic Reticulum/ultrastructure
12.
Circ Res ; 111(7): 837-41, 2012 Sep 14.
Article in English | MEDLINE | ID: mdl-22891046

ABSTRACT

RATIONALE: Failing cardiomyocytes exhibit decreased efficiency of excitation-contraction (E-C) coupling. The downregulation of junctophilin-2 (JP2), a protein anchoring the sarcoplasmic reticulum to T-tubules, has been identified as a major mechanism underlying the defective E-C coupling. However, the regulatory mechanism of JP2 remains unknown. OBJECTIVE: To determine whether microRNAs regulate JP2 expression. METHODS AND RESULTS: Bioinformatic analysis predicted 2 potential binding sites of miR-24 in the 3'-untranslated regions of JP2 mRNA. Luciferase assays confirmed that miR-24 suppressed JP2 expression by binding to either of these sites. In the aortic stenosis model, miR-24 was upregulated in failing cardiomyocytes. Adenovirus-directed overexpression of miR-24 in cardiomyocytes decreased JP2 expression and reduced Ca(2+) transient amplitude and E-C coupling gain. CONCLUSIONS: MiR-24-mediated suppression of JP2 expression provides a novel molecular mechanism for E-C coupling regulation in heart cells and suggests a new target against heart failure.


Subject(s)
Aortic Valve Stenosis/metabolism , Heart Failure/metabolism , Membrane Proteins/metabolism , MicroRNAs/metabolism , Myocytes, Cardiac/metabolism , Up-Regulation , Animals , Aortic Valve Stenosis/pathology , Calcium/metabolism , Cells, Cultured , Computational Biology , Excitation Contraction Coupling/physiology , Heart Failure/pathology , Membrane Proteins/genetics , MicroRNAs/genetics , Models, Animal , Myocytes, Cardiac/pathology , RNA, Messenger/metabolism , Rats , Sarcoplasmic Reticulum/physiology
13.
J Theor Biol ; 309: 29-33, 2012 Sep 21.
Article in English | MEDLINE | ID: mdl-22659040

ABSTRACT

TH17 is a subset of CD4+T cells. Comparing to common asthma patients, there are more TH17 cells in the respiratory systems of the patients with severe asthma. TH17 cells are mainly adjusted by IL23 to produce IL17A and IL17F, which act on the epithelial cells and cause severe asthma. However, the TH17 function in severe asthma as a driving mechanism of neutrophilic inflammation is not yet fully understood and deserves further study. However, it is very difficult to describe the interactions between TH17 and other cells using mathematics equations due to the high complexity of immunity system. In order to explore the TH17 function in severe asthma, we used BIS (Basic Immune Simulator) platform to simulate TH17 models, and compared DC (Dendritic Cell) models with TH17 models. We studied the interaction between innate immune and adaptive immune cells, which was resulted from TH17 cells. The simulation results for the TH17 models are consistent with clinical data, which suggests that DC-IL23-TH17 axis might be the path of causing severe asthma. Our simulation studies support a role for TH17 in severe asthma, and hence it could be taken as a new target candidate for clinical treatment of severe asthma.


Subject(s)
Asthma/immunology , Models, Immunological , Signal Transduction/immunology , Th17 Cells/immunology , Computer Simulation , Humans , Lymphocyte Count
14.
Anal Chem ; 84(7): 3376-81, 2012 Apr 03.
Article in English | MEDLINE | ID: mdl-22413933

ABSTRACT

We developed novel flow-through surface-enhanced Raman scattering (SERS) platforms using gold nanoparticle (Au-NP) immobilized multihole capillaries for rapid and sensitive vapor detection. The multihole capillaries consisting of thousands of micrometer-sized flow-through channels provide many unique characteristics for vapor detection. Most importantly, its three-dimensional SERS-active micro-/nanostructures make available multilayered assembly of Au-NPs, which greatly increase SERS-active surface area within a focal volume of excitation and collection, thus improving the detection sensitivity. In addition, the multihole capillary's inherent longitudinal channels offer rapid and convenient vapor delivery, yet its micrometer-sized holes increase the interaction between vapor molecules and SERS-active substrate. Experimentally, rapid pyridine vapor detection (within 1 s of exposure) and ultrasensitive 4-nitrophenol vapor detection (at a sub-ppb level) were successfully achieved in open air at room temperature. Such an ultrasensitive SERS platform enabled, for the first time, the investigation of both pyridine and 4-nitrophenol vapor adsorption isotherms at very low concentrations. Type I and type V behaviors of the International Union of Pure and Applied Chemistry isotherm were well observed, respectively.


Subject(s)
Gold/chemistry , Metal Nanoparticles/chemistry , Spectrum Analysis, Raman/methods , Nitrophenols/chemistry , Pyridines/chemistry , Surface Properties , Volatilization
15.
Lab Chip ; 12(5): 901-5, 2012 Mar 07.
Article in English | MEDLINE | ID: mdl-22245960

ABSTRACT

We developed and characterized a rapid, sensitive and integrated optical vapor sensor array for micro-gas chromatography (µGC) applications. The sensor is based on the Fabry-Pérot (FP) interferometer formed by a micrometre-thin vapor-sensitive polymer layer coated on a silicon wafer. The thickness and the refractive index of the polymer vary in response to the vapor analyte, resulting in a change in the reflected intensity of the laser impinged on the sensor. In our study, four different polymers were coated on four wells pre-etched on a silicon wafer to form a spatially separated sensor array. A CMOS imager was employed to simultaneously monitor the polymers' response, thus enabling multiplexed detection of a vapor analyte passing through the GC column. A sub-second detection time was demonstrated. In addition, a sub-picogram detection limit was achieved, representing orders of magnitude improvement over the on-chip vapor sensors previously reported.


Subject(s)
Chromatography, Gas/methods , Microarray Analysis , Polymers/chemistry , Reproducibility of Results , Silicon/chemistry , Time Factors
16.
ACS Nano ; 6(1): 381-8, 2012 Jan 24.
Article in English | MEDLINE | ID: mdl-22176766

ABSTRACT

3-Dimensional surface-enhanced Raman scattering (SERS) detection integrated with optofluidics offers many advantages over conventional SERS conducted under planar and static conditions. In this paper, we developed a novel optofluidic SERS platform based on nanoparticle-functionalized flow-through multihole capillaries for rapid, reliable, and ultrasensitive analyte detection. The unique configuration not only provides 3-dimensional geometry for significantly increased SERS-active area and inherent fluidic channels for rapid and efficient sample delivery, but also confines and transmits light along the capillary for large SERS signal accumulation. Using a capillary consisting of thousands of micrometer-sized holes adsorbed with gold nanoparticles, we investigated the proposed optofluidic SERS system using the transverse and longitudinal detection methods, where the SERS excitation and collection were perpendicular to and along the capillary, respectively. A detection limit better than 100 fM for rhodamine 6G was achieved with an enhancement factor exceeding 10(8).


Subject(s)
Microfluidics/methods , Nanoparticles/chemistry , Rhodamines/analysis , Spectrum Analysis, Raman/methods , Capillary Action
17.
Int J Cancer ; 131(2): 488-96, 2012 Jul 15.
Article in English | MEDLINE | ID: mdl-21866550

ABSTRACT

XPA, a zinc-finger DNA-binding protein, play an important role in both global genome and transcription-coupled repair pathways. XPA -4G>A polymorphism was identified in the 5' noncoding region, located four nucleotides upstream of the ATG start codon. Previous studies have shown that this polymorphism may affect mRNA tertiary structure and stability and play a role in susceptibility to cancer. However, the results remained controversial. To derive a more precise estimation of association between this polymorphism and risk of different types of cancer, we performed a meta-analysis based on 36 case-control or case-cohort studies, including a total of 11,700 cases and 15,033 controls. We used odds ratios with 95% confidence intervals to assess the strength of the association. Overall, no significantly elevated cancer risk was found in all genetic models when eligible studies were pooled into the meta-analysis. In the stratified analyses, we found that individuals with A-allele had a higher risk of lung cancer (AA versus GG: OR = 1.25, 95% CI = 1.09-1.43; recessive model: OR = 1.31, 95% CI = 1.16-1.48). When stratified by ethnicity, significantly elevated risks were observed among Asian populations (AA versus GG: OR = 1.31, 95% CI = 1.01-1.70; dominant model: OR = 1.14, 95% CI = 1.00-1.30). This meta-analysis suggests that XPA -4G>A polymorphism is associated with increased lung cancer risk and may be a low-penetrant risk factor in Asian ethnicity for cancer development.


Subject(s)
Genetic Predisposition to Disease , Lung Neoplasms/genetics , Neoplasms/genetics , Polymorphism, Single Nucleotide , Xeroderma Pigmentosum Group A Protein/genetics , Asian People/genetics , Case-Control Studies , Genetic Variation , Humans , Lung Neoplasms/ethnology , Neoplasms/ethnology , Odds Ratio
18.
Nan Fang Yi Ke Da Xue Xue Bao ; 31(4): 610-4, 2011 Apr.
Article in Chinese | MEDLINE | ID: mdl-21515453

ABSTRACT

OBJECTIVE: To design a platform for microarray data analysis and processing in the browser/server mode running in Linux operating system. METHODS: Based on the Apache HTTP server, the platform, programmed with Perl language, integrated R language and Bioconductor packages for processing and analysis of the input data of oligonucleotide arrays and two-color spotted arrays. Users were allowed to submit data and parameter configurations to the platform via the web page, and the results of analysis were also returned via the web page. RESULTS: With an easy operation and high performance, the platform fulfilled the functions of processing, quality assessment, biological annotation and statistical analysis of the data from oligonucleotide arrays and two-color spotted arrays. Using the platform, we analyzed the gene expression profiles in Mtb-stimulated macrophages of three clinical phenotypes, namely latent TB (LTB), pulmonary (PTB) and meningeal (TBM), and obtained valuable clues for identifying tuberculosis susceptibility genes. We also analyzed the effect of INH treatment on Mycobacterium tuberculosis gene expression in various dormancy models, such as hypoxia and KatG mutant, and found that a set of genes responded to INH treatment during exponential growth but not in dormancy, and that the overall number of differentially regulated genes was reduced in the cells in low metabolic state. CONCLUSION: The platform we have constructed integrates comprehensive resources, and with a user-friendly interface, allows direct result visualization to facilitate microarray data analysis.


Subject(s)
Computational Biology/methods , Oligonucleotide Array Sequence Analysis , Software , Databases, Genetic , Gene Expression Profiling/methods , Genetic Predisposition to Disease , Humans , Macrophages/metabolism , Macrophages/microbiology , Mycobacterium tuberculosis/genetics , Tuberculosis/genetics , Tuberculosis/immunology , User-Computer Interface
19.
J Biomed Opt ; 16(1): 017001, 2011.
Article in English | MEDLINE | ID: mdl-21280922

ABSTRACT

High-resolution ultrasound imaging requires quality sensors with wide bandwidth and high sensitivity, as shown in a wide range of applications, including intravascular imaging of cardiovascular diseases. However, piezoelectric technology, the current dominant approach for hydrophone fabrication, has encountered many technical limitations in the high-frequency range. Using optical techniques for the detection of high-frequency ultrasound signals has attracted much recent attention. One of the most studied approaches is based on a Fabry-Pérot interferometer, consisting of an optical cavity sandwiched between two mirrors. This technique offers promising sensitivity and bandwidth, and a potential alternative to piezoelectric polyvinylidene fluoride (PVDF) hydrophones. We propose an innovative optical ultrasound sensor using only a single mirror in a total-internal-reflection configuration. Besides retaining the advantages of Fabry-Pérot interferometer-based ultrasound sensors, this unique design provides a bandwidth of at least 160 MHz, a potential decrease in fabrication cost, and an increase in signal fidelity.


Subject(s)
Interferometry/instrumentation , Lenses , Transducers , Ultrasonography/instrumentation , Computer-Aided Design , Equipment Design , Equipment Failure Analysis , Reproducibility of Results , Sensitivity and Specificity
20.
Opt Express ; 18(24): 25081-8, 2010 Nov 22.
Article in English | MEDLINE | ID: mdl-21164854

ABSTRACT

We theoretically analyze the ability of 3-dimensionally confined optofluidic ring resonators (OFRRs) for detection of a single nanoparticle in water and in air. The OFRR is based on a glass capillary, on which bottle-shaped and bubble-shaped ring resonators can form. The spectral position of the whispering gallery mode in the OFRR shifts when a nanoparticle is attached to the OFRR inner surface. For both ring resonator structures, the electric field at the inner surface can be optimized by choosing the right wall thickness. Meanwhile, different electric field confinement along the capillary longitudinal axis can be achieved with different curvatures. Both effects significantly increase the sensitivity of the ring resonator for single nanoparticle detection. It is found that the sensitivity is enhanced about 10 times, as compared to that of a solid microsphere biosensor recently reported, and that the smallest detectable nanoparticle is estimated to be less than 20 nm in radius for a Δλ/λ resolution of 10(-8). The high sensitivity and the naturally integrated capillary based microfluidics make the OFRR a very promising sensing platform for detection of various nano-sized bio/chemical species in liquid as well as in air.

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