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1.
Am J Hum Genet ; 110(8): 1394-1413, 2023 08 03.
Article in English | MEDLINE | ID: mdl-37467750

ABSTRACT

DExD/H-box RNA helicases (DDX/DHX) are encoded by a large paralogous gene family; in a subset of these human helicase genes, pathogenic variation causes neurodevelopmental disorder (NDD) traits and cancer. DHX9 encodes a BRCA1-interacting nuclear helicase regulating transcription, R-loops, and homologous recombination and exhibits the highest mutational constraint of all DDX/DHX paralogs but remains unassociated with disease traits in OMIM. Using exome sequencing and family-based rare-variant analyses, we identified 20 individuals with de novo, ultra-rare, heterozygous missense or loss-of-function (LoF) DHX9 variant alleles. Phenotypes ranged from NDDs to the distal symmetric polyneuropathy axonal Charcot-Marie-Tooth disease (CMT2). Quantitative Human Phenotype Ontology (HPO) analysis demonstrated genotype-phenotype correlations with LoF variants causing mild NDD phenotypes and nuclear localization signal (NLS) missense variants causing severe NDD. We investigated DHX9 variant-associated cellular phenotypes in human cell lines. Whereas wild-type DHX9 was restricted to the nucleus, NLS missense variants abnormally accumulated in the cytoplasm. Fibroblasts from an individual with an NLS variant also showed abnormal cytoplasmic DHX9 accumulation. CMT2-associated missense variants caused aberrant nucleolar DHX9 accumulation, a phenomenon previously associated with cellular stress. Two NDD-associated variants, p.Gly411Glu and p.Arg761Gln, altered DHX9 ATPase activity. The severe NDD-associated variant p.Arg141Gln did not affect DHX9 localization but instead increased R-loop levels and double-stranded DNA breaks. Dhx9-/- mice exhibited hypoactivity in novel environments, tremor, and sensorineural hearing loss. All together, these results establish DHX9 as a critical regulator of mammalian neurodevelopment and neuronal homeostasis.


Subject(s)
Charcot-Marie-Tooth Disease , Neurodevelopmental Disorders , Animals , Humans , Mice , Cell Line , Charcot-Marie-Tooth Disease/genetics , DEAD-box RNA Helicases/genetics , Dichlorodiphenyl Dichloroethylene , DNA Helicases , Mammals , Neoplasm Proteins/genetics
2.
Am J Med Genet A ; 188(6): 1667-1675, 2022 06.
Article in English | MEDLINE | ID: mdl-35146895

ABSTRACT

TRPM3 encodes a transient receptor potential cation channel of the melastatin family, expressed in the central nervous system and in peripheral sensory neurons of the dorsal root ganglia. The recurrent substitution in TRPM3: c.2509G>A, p.(Val837Met) has been associated with syndromic intellectual disability and seizures. In this report, we present the clinical and molecular features of seven previously unreported individuals, identified by exome sequencing, with the recurrent p.(Val837Met) variant and global developmental delay. Other shared clinical features included congenital hypotonia, dysmorphic facial features (broad forehead, deep-set eyes, and down turned mouth), exotropia, and musculoskeletal issues (hip dysplasia, hip dislocation, scoliosis). Seizures were observed in two of seven individuals (febrile seizure in one and generalized tonic-clonic seizures with atonic drops in another), and epileptiform activity was observed in an additional two individuals. This report extends the number of affected individuals to 16 who are heterozygous for the de novo recurrent substitution p.(Val837Met). In contrast with the initial report, epilepsy was not a mandatory feature observed in this series. TRPM3 pathogenic variation should be considered in individuals with global developmental delays, moderate-severe intellectual disability with, or without, childhood-onset epilepsy.


Subject(s)
Epilepsy , Infant, Newborn, Diseases , Intellectual Disability , TRPM Cation Channels , Child , Developmental Disabilities/genetics , Humans , Infant, Newborn , Intellectual Disability/genetics , Muscle Hypotonia/genetics , Mutation, Missense , TRPM Cation Channels/genetics , Exome Sequencing
3.
Am J Med Genet A ; 185(12): 3740-3753, 2021 12.
Article in English | MEDLINE | ID: mdl-34331327

ABSTRACT

Zhu-Tokita-Takenouchi-Kim (ZTTK) syndrome is caused by de novo loss-of-function variants in the SON gene (MIM #617140). This multisystemic disorder is characterized by intellectual disability, seizures, abnormal brain imaging, variable dysmorphic features, and various congenital anomalies. The wide application and increasing accessibility of whole exome sequencing (WES) has helped to identify new cases of ZTTK syndrome over the last few years. To date, there have been approximately 45 cases reported in the literature. Here, we describe 15 additional individuals with variants in the SON gene, including those with missense variants bringing the total number of known cases to 60. We have reviewed the clinical and molecular data of these new cases and all previously reported cases to further delineate the most common as well as emerging clinical findings related to this syndrome. Furthermore, we aim to delineate any genotype-phenotype correlations specifically for a recurring pathogenic four base pair deletion (c.5753_5756del) along with discussing the impact of missense variants seen in the SON gene.


Subject(s)
Congenital Abnormalities/genetics , DNA-Binding Proteins/genetics , Intellectual Disability/genetics , Minor Histocompatibility Antigens/genetics , Seizures/genetics , Brain/diagnostic imaging , Brain/pathology , Congenital Abnormalities/diagnosis , Congenital Abnormalities/pathology , Female , Genetic Association Studies , Genetic Predisposition to Disease , Genotype , Humans , Intellectual Disability/diagnosis , Intellectual Disability/pathology , Male , Mutation, Missense/genetics , Phenotype , Seizures/diagnosis , Seizures/pathology , Exome Sequencing
4.
Patient Educ Couns ; 103(1): 127-135, 2020 01.
Article in English | MEDLINE | ID: mdl-31521424

ABSTRACT

OBJECTIVE: Growing use of clinical exome sequencing (CES) has led to an increased burden of genomic education. Self-guided educational tools can minimize the educational burden for genetic counselors (GCs). The effectiveness of these tools must be evaluated. METHODS: Parents of patients offered CES were randomized to watch educational videos before their visit or to receive routine care. Parents and GCs were surveyed about their experiences following the sessions. The responses of the video (n = 102) and no-video (n = 105) groups were compared. RESULTS: GCs reported no significant differences between parents in the video and no-video groups on genetics knowledge or CES knowledge. In contrast, parents' scores on genetics knowledge questions were lower in the video than no-video group (p = 0.007). Most parents reported the videos were informative, and the groups did not differ in satisfaction with GCs or decisions to have CES. CONCLUSION: GCs and parents perceived the videos to be beneficial. However, lower scores on genetics knowledge questions highlight the need for careful development of educational tools. PRACTICE IMPLICATIONS: Educational tools should be developed and assessed for effectiveness with the input of all stakeholders before widespread implementation. Better measures of the effectiveness of these educational tools are needed.


Subject(s)
Counselors , Genetic Counseling , Exome , Humans , Parents , Patient Education as Topic
5.
Article in English | MEDLINE | ID: mdl-31010896

ABSTRACT

Two siblings, one male and one female, ages 6 and 13 yr old, have similar clinical features of global developmental delay, multiple congenital anomalies affecting the cardiac, genitourinary, and skeletal systems, and abnormal eye movements. Whole-genome sequencing revealed a homozygous splice variant (NM_014462.3:c.231+4A>C) in LSM1 that segregated with the phenotype in the family. LSM1 has a role in pre-mRNA splicing and degradation. Expression studies revealed absence of expression of the canonical isoform in the affected individuals. The Lsm1 knockout mice have a partially overlapping phenotype that affects the brain, heart, and eye. To our knowledge, LSM1 has not been associated with any human disorder; however, the tissue expression pattern, gene constraint, and the similarity of the phenotype in our patients and the knockout mice models suggest it has a role in the development of multiple organ systems in humans.


Subject(s)
Abnormalities, Multiple/genetics , Congenital Abnormalities/genetics , Developmental Disabilities/genetics , Proto-Oncogene Proteins/genetics , RNA Splicing/genetics , RNA-Binding Proteins/genetics , Abnormalities, Multiple/diagnosis , Abnormalities, Multiple/pathology , Adolescent , Animals , Child , Congenital Abnormalities/diagnosis , Congenital Abnormalities/pathology , Developmental Disabilities/diagnosis , Developmental Disabilities/pathology , Exons/genetics , Female , Homozygote , Humans , Male , Mutation , Phenotype , RNA Stability , Siblings
6.
Rev. méd. hondur ; 86(3/4): 119-122, jul.- dic. 2018. ilus
Article in Spanish | LILACS | ID: biblio-1022264

ABSTRACT

Antecedentes: El cáncer endometrial (CE) según las estadísticas es el tumor ginecológico más frecuente en países desarrollados, donde su incidencia ha ido en aumento. Históricamente, el CE se ha clasificado en dos tipos: Tipo I (endometrioide), representando el 80-90% de los casos; el tipo II (no endometrioide como el de células serosas y claras, carcinomas indiferenciados). Como dato importante, la mayoría de las pacientes son diagnosticadas cuando la enfermedad se encuentra en etapas tempranas o la lesión todavía está confinada al útero. El tratamiento convencional radica en una histerectomía primaria más salpingooforectomía bilateral, según el estadío de la enfermedad. Caso clínico: Paciente de 58 años de edad que ingresa al Hospital de San Marcos, Ocotepeque, con sangrado transvaginal de 1 mes de evolución, hipertensión crónica y obesidad tipo I. En el ultrasonido transvaginal se observó engrosamiento endometrial, pero en la biopsia se diagnosticó Adenocarcinoma Endometrial de tipo Endometroide Grado II-III de la FIGO. Conclusión: Ante la presencia de sangrado uterino anormal en mujeres peri y postmenopáusicas, con factores de riesgos asociados, se debe sospechar cáncer de endometrio...(AU)


Subject(s)
Humans , Female , Middle Aged , Serous Membrane , Carcinoma , Endometrial Neoplasms/diagnosis , Cystadenocarcinoma, Serous
7.
Am J Perinatol ; 35(9): 858-864, 2018 07.
Article in English | MEDLINE | ID: mdl-29365327

ABSTRACT

OBJECTIVE: The objective of this study was to ascertain the likelihood of isolated maternal fever and suspected intrauterine inflammation or infection or both (Triple I) among cases of histologic chorioamnionitis with funisitis (HCF) at term. STUDY DESIGN: In this case-control study, placental pathology records were reviewed to identify term singleton laboring patients with HCF. Controls (1:1) were matched for gestational age. RESULTS: During the 6-month period, there were 2,399 term deliveries of laboring women. Of 1,552 (65%) term placentas examined, 4% (n = 60) had HCF.Features of Triple I were significantly more common among cases than controls: (1) isolated maternal fever of ≥100.4°F, twice, at least 30 minutes apart (p = 0.014); (2) fever with fetal tachycardia (p = 0.029); 3) fever with either fetal tachycardia or white blood cell count greater than 15,000 per mm3 (p = 0.034). The feature of Triple I with the highest sensitivity at 10% (95% confidence intervals [CI] 4-21%) was isolated maternal fever using ≥100.4°F on two occasions. The specificity for all features was consistently 100% (95% CI 91-100%). CONCLUSION: To our knowledge, this is the first report on HCF and Triple I features. Though the sensitivity of Triple I to identify HCF is low, specificity is excellent.


Subject(s)
Chorioamnionitis/pathology , Chorioamnionitis/physiopathology , Infections/etiology , Inflammation/etiology , Pregnancy Complications/diagnosis , Uterine Diseases/microbiology , Adolescent , Adult , Amniotic Fluid/microbiology , Case-Control Studies , Female , Gestational Age , Humans , Infant, Newborn , Infections/diagnosis , Inflammation/diagnosis , Labor, Obstetric , Male , Pregnancy , Pregnancy Outcome , Probability , Sensitivity and Specificity , Uterine Diseases/physiopathology , Young Adult
8.
Appl Biochem Biotechnol ; 184(3): 794-805, 2018 Mar.
Article in English | MEDLINE | ID: mdl-28866857

ABSTRACT

Laccases catalyze the oxidation of various aromatic organic compounds concomitantly with molecular oxygen reduction to water. Triphenylmethane dyes are synthetic compounds widely used in diverse industries. Their removal from effluents is difficult, due to their high degree of structural complexity; hence, their high concentration in effluents cause a negative impact on the environment. In the present work, molecular docking was used to evaluate interactions between rGlLCC1 or rPOXA 1B enzymes with Crystal Violet (CV) or Malachite Green (MG) dyes. In addition, removal tests of the two dyes were performed. Van der Waals interactions were obtained for only the CV dye for both GlLCC1 and POXA 1B enzymes. Nevertheless, in the GlLCC1 model, two π-π interactions were observed. For the MG dye only, Van der Waals interactions were obtained. Moreover, amino acid composition interacting in each model with each dye was similar. It is important to highlight that by molecular docking, none of the estimated ligand configurations generated hydrogen bonds. Thus, explaining the difficulty to degrade CV and MG. Regarding CV, maximum decolorization percentage was 23.6 ± 1.0% using Ganoderma lucidum supernatant and 5.0 ± 0.5% with Pleurotus ostreatus supernatant. When using recombinant laccase enzyme concentrates, decolorization percentages were 9.9 ± 0.1 and 7.5 ± 1.0% for rGlLCC1 and rPOXA 1B, respectively. On the other hand, for the MG dye, maximum decolorization percentages were 52.1 ± 5.1 and 2.3 ± 0.2% using G. lucidum and P. ostreatus concentrates, respectively. Whereas with recombinant laccase enzymatic concentrates, values of 9.4 ± 0.8% were obtained, with rGlLCC1, and 2.1 ± 0.1% when using rPOXA 1B. These findings represent an important step in bioremediation processes improvement and efficiency of industry-generated products, using environmentally friendly alternatives.


Subject(s)
Fungal Proteins/chemistry , Gentian Violet/chemistry , Molecular Docking Simulation , Pleurotus/enzymology , Reishi/enzymology , Rosaniline Dyes/chemistry , Fungal Proteins/genetics , Pleurotus/genetics , Reishi/genetics
9.
Rev. méd. hondur ; 85(3/4): 124-127, jul.-dic. 2017. ilus
Article in Spanish | LILACS | ID: biblio-970340

ABSTRACT

Introducción. Las infecciones son la segunda causa de muerte materna en países de bajos ingresos. El ácido acético se conoce en la actualidad como un potente antiséptico de amplio espectro para gran positivos, gran negativos, hongos y protozoos, a través de su acción biocida y su acción biostatica, produciendo coagulación y precipitación de las proteínas, alterando las características de la permeabilidad celular y toxicidad o envenenamiento de los sistemas enzimáticos de las bacterias. Las quemaduras por ácido acético son infrecuentes y va depender para que se produzca injuria de la dilución, concentración, tiempo de exposición. Caso clínico: Se presenta el caso de una paciente de 25 años, parto por cesárea con infección y dehiscencia del sitio la herida quirúrgica tratada con antibioticos de amplio espectro, sin mejoría. Se manejó con ácido acético, provocando quemadura de segundo grado en borde de herida y pubis Discusion: El riesgo de sufrir quemaduras por ácido acético aumenta dependiendo de la tolerabilidad del paciente, el grado de concentración, dilución y el tiempo de exposición de este agente antiséptico tópico. Conclusión: Aunque las quemaduras por ácido acético son infrecuentes, siempre es necesario tener presente la dilución de la concentración adecuada y el tiempo de exposición al ácido acético, ya que dependiendo de la tolerabilidad cambia el pronóstico y tratamiento


Subject(s)
Humans , Female , Pregnancy , Adult , Burns, Chemical/complications , Acetic Acid , Anti-Infective Agents, Local/therapeutic use , Cesarean Section/methods
10.
Appl Biochem Biotechnol ; 183(4): 1540-1541, 2017 12.
Article in English | MEDLINE | ID: mdl-28990133

ABSTRACT

The original version of this article unfortunately contained a mistake. The replacement image of Fig. 4 provided by the first corresponding author, Aura M. Pedroza-Rodríguez, is incorrect and that the originally submitted Fig. 4 should have been retained. The original article has been corrected.

11.
BMC Neurosci ; 18(1): 44, 2017 05 16.
Article in English | MEDLINE | ID: mdl-28511693

ABSTRACT

BACKGROUND: The GluN2B subunit of the N-methyl-D-aspartate receptor (NMDAr) modulates many physiological processes including learning, memory, and pain. Excessive increase in NMDAr/GluN2B activity has been associated with various disorders such neuropathic pain and neuronal death following hypoxia. Thus there is an interest in identifying NMDAr antagonists that interact specifically with the GluN2B subunit. Recently based on structural analysis between the GluN2B subunit and conantokin-G, a toxin that interacts selectively with the GluN2B subunit, we designed various peptides that are predicted to act as NMDAr antagonists by interacting with the GluN2B subunit. In this study we tested this prediction for two of these peptides EAR16 and EAR18. RESULTS: The effects of EAR16 and EAR18 in NMDA-evoked currents were measured in cultured rat embryonic hippocampal neurons and in HEK-293 cells expressing recombinant NMDAr comprised of GluN1a-GluN2A or GluN1a-GluN2B subunits. In hippocampal neurons, EAR16 and EAR18 reduced the NMDA-evoked calcium currents in a dose-dependent and reversible manner with comparable IC50 (half maximal inhibitory concentration) values of 241 and 176 µM, respectively. At 500 µM, EAR16 blocked more strongly the NMDA-evoked currents mediated by the GluN1a-GluN2B (84%) than those mediated by the GluN1a-GluN2A (50%) subunits. At 500 µM, EAR18 blocked to a similar extent the NMDA-evoked currents mediated by the GluN1a-GluN2B (62%) and the GluN1a-GluN2A (55%) subunits. CONCLUSIONS: The newly designed EAR16 and EAR18 peptides were shown to block in reversible manner NMDA-evoked currents, and EAR16 showed a stronger selectivity for GluN2B than for GluN2A.


Subject(s)
Excitatory Amino Acid Antagonists/pharmacology , Neurons/drug effects , Peptides/pharmacology , Receptors, N-Methyl-D-Aspartate/antagonists & inhibitors , Animals , Conotoxins/pharmacology , Excitatory Amino Acid Antagonists/chemical synthesis , HEK293 Cells , Hippocampus/drug effects , Humans , Molecular Docking Simulation , Peptides/chemical synthesis , Rats
12.
AJP Rep ; 7(1): e49-e58, 2017 Jan.
Article in English | MEDLINE | ID: mdl-28348923

ABSTRACT

Objective The objective of this study was to compare clinical outcomes of preeclamptic pregnancies according to the proteinuria level. Study Design Secondary analysis of a multicenter prospective cohort study of women with preeclampsia (PE) symptomatology. Nonproteinuria, mild-proteinuria, and massive-proteinuria PEs were defined as: < 165 mg in 12 hours or < 300 mg in 24 hours, 165 mg to 2.69 g in 12 hours or 300 mg to 4.99 g in 24 hours, and ≥ 2.7 g in 12 hours or ≥ 5.0 g in 24 hours, respectively. Individual and composite maternal, fetal, and neonatal outcomes were compared among the PE groups. Results Of the 406 analyzed pregnancies, 36 (8.8%) had massive-proteinuria PE, 268 (66.0%) mild-proteinuria PE, and 102 (25.1%) nonproteinuria PE. Compared with the other groups, massive-proteinuria PE women had significantly higher blood pressures (p < 0.001), epigastric pain (p = 0.007), and uric acid serum levels (p < 0.001) prior to delivery. Composite maternal morbidity was similar across the groups. Delivery < 340/7 weeks occurred in 80.6, 49.3, and 22.5% of massive-proteinuria, mild-proteinuria, and nonproteinuria PE groups, respectively (p < 0.0001). Composite adverse neonatal outcomes were significantly higher in the massive-proteinuria PE compared with the other groups (p = 0.001). Conclusion While potentially not important diagnostically, massive proteinuria is associated with more severe clinical manifestations of PE prompting earlier delivery.

13.
Am J Hum Genet ; 98(5): 1001-1010, 2016 05 05.
Article in English | MEDLINE | ID: mdl-27108799

ABSTRACT

Whole-exome sequencing of 13 individuals with developmental delay commonly accompanied by abnormal muscle tone and seizures identified de novo missense mutations enriched within a sub-region of GNB1, a gene encoding the guanine nucleotide-binding protein subunit beta-1, Gß. These 13 individuals were identified among a base of 5,855 individuals recruited for various undiagnosed genetic disorders. The probability of observing 13 or more de novo mutations by chance among 5,855 individuals is very low (p = 7.1 × 10(-21)), implicating GNB1 as a genome-wide-significant disease-associated gene. The majority of these 13 mutations affect known Gß binding sites, which suggests that a likely disease mechanism is through the disruption of the protein interface required for Gα-Gßγ interaction (resulting in a constitutively active Gßγ) or through the disruption of residues relevant for interaction between Gßγ and certain downstream effectors (resulting in reduced interaction with the effectors). Strikingly, 8 of the 13 individuals recruited here for a neurodevelopmental disorder have a germline de novo GNB1 mutation that overlaps a set of five recurrent somatic tumor mutations for which recent functional studies demonstrated a gain-of-function effect due to constitutive activation of G protein downstream signaling cascades for some of the affected residues.


Subject(s)
Developmental Disabilities/etiology , GTP-Binding Protein beta Subunits/genetics , Germ-Line Mutation/genetics , Intellectual Disability/etiology , Muscle Hypotonia/etiology , Seizures/etiology , Adolescent , Adult , Child , Child, Preschool , Developmental Disabilities/pathology , Exome/genetics , Female , GTP-Binding Protein beta Subunits/chemistry , Humans , Infant , Intellectual Disability/pathology , Male , Muscle Hypotonia/pathology , Phenotype , Protein Conformation , Seizures/pathology , Signal Transduction , Young Adult
14.
Am J Med Genet A ; 170A(4): 1023-8, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26697951

ABSTRACT

Common FTO variants are associated with obesity. However, it has recently been shown that homozygous FTO c.947G>A variant, which predicts p.R316Q, and c.956C>T, which predicts p.S319F, are associated with a malformation syndrome inherited in an autosomal recessive pattern. We present a similar homozygous FTO c.965G>A variant that predicts p.R322Q, associated with a lethal malformation syndrome in a consanguineous Yemeni family. Functional studies showed that the p.R316Q, p.S219F, and p.R322Q variants render the FTO protein inactive. We further expand on the phenotype of homozygous FTO loss-of-function mutations to include eye abnormalities, gingival overgrowth, craniosynostosis, and cutaneous photosensitivity.


Subject(s)
Abnormalities, Multiple/diagnosis , Abnormalities, Multiple/genetics , Alpha-Ketoglutarate-Dependent Dioxygenase FTO/genetics , Genetic Variation , Phenotype , Alleles , Brain/pathology , Female , Homozygote , Humans , Infant , Male , Mutation , Syndrome , Tomography, X-Ray Computed
15.
PLoS One ; 10(1): e0116524, 2015.
Article in English | MEDLINE | ID: mdl-25611746

ABSTRACT

Lacasses are multicopper oxidases that can catalyze aromatic and non-aromatic compounds concomitantly with reduction of molecular oxygen to water. Fungal laccases have generated a growing interest due to their biotechnological potential applications, such as lignocellulosic material delignification, biopulping and biobleaching, wastewater treatment, and transformation of toxic organic pollutants. In this work we selected fungal genes encoding for laccase enzymes GlLCC1 in Ganoderma lucidum and POXA 1B in Pleurotus ostreatus. These genes were optimized for codon use, GC content, and regions generating secondary structures. Laccase proposed computational models, and their interaction with ABTS [2, 2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid)] substrate was evaluated by molecular docking. Synthetic genes were cloned under the control of Pichia pastoris glyceraldehyde-3-phosphate dehydrogenase (GAP) constitutive promoter. P. pastoris X-33 was transformed with pGAPZαA-LaccGluc-Stop and pGAPZαA-LaccPost-Stop constructs. Optimization reduced GC content by 47 and 49% for LaccGluc-Stop and LaccPost-Stop genes, respectively. A codon adaptation index of 0.84 was obtained for both genes. 3D structure analysis using SuperPose revealed LaccGluc-Stop is similar to the laccase crystallographic structure 1GYC of Trametes versicolor. Interaction analysis of the 3D models validated through ABTS, demonstrated higher substrate affinity for LaccPost-Stop, in agreement with our experimental results with enzymatic activities of 451.08 ± 6.46 UL-1 compared to activities of 0.13 ± 0.028 UL-1 for LaccGluc-Stop. This study demonstrated that G. lucidum GlLCC1 and P. ostreatus POXA 1B gene optimization resulted in constitutive gene expression under GAP promoter and α-factor leader in P. pastoris. These are important findings in light of recombinant enzyme expression system utility for environmentally friendly designed expression systems, because of the wide range of substrates that laccases can transform. This contributes to a great gamut of products in diverse settings: industry, clinical and chemical use, and environmental applications.


Subject(s)
Fungal Proteins , Gene Expression , Laccase , Models, Molecular , Pichia/genetics , Pleurotus/genetics , Reishi/genetics , Computer Simulation , Fungal Proteins/biosynthesis , Fungal Proteins/genetics , Laccase/biosynthesis , Laccase/genetics , Pichia/metabolism , Pleurotus/metabolism , Protein Structure, Secondary , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics , Reishi/metabolism
16.
VozAndes ; 26(1): 25-30, 2015.
Article in Spanish | LILACS | ID: biblio-999804

ABSTRACT

En pacientes con síndrome coronario agudo los puntajes de riesgo GRACE y TIMI son herramientas para estimar el pronóstico de desenlaces cardiovasculares. Las comparaciones entre ambos puntajes en poblaciones latinoamericanas son escasas. Objetivo Comparar la capacidad discriminatoria de los puntajes GRACE y TIMI para eventos cardiovasculares durante la hospitalización en pacientes con infarto de miocardio sin elevación ST (IMSEST) y angina inestable (AI). Diseño Cohorte retrospectiva. Lugar y sujetos 378 pacientes con diagnóstico de IMSEST o AI atendidos durante el período 2011 ­ 2014 en el Hospital Carlos Andrade Marín de la ciudad de Quito. Mediciones principales Puntaje de riesgo GRACE, puntaje de riesgo TIMI, aparición de eventos cardiovasculares (muerte, reinfarto, angina refractaria e intervención coronaria de urgencia) durante la hospitalización. Capacidad discriminatoria de los puntajes evaluada mediante curvas ROC. Resultados En los pacientes predominó el sexo masculino (78%). En orden de frecuencia los eventos cardiovasculares fueron: intervención coronaria de urgencia (51%), angina refractaria (12%), muerte (9%) y reinfarto (5%). El score GRACE presentó resultados de área bajo la curva (AUC) mayores y estadísticamente signifcativos para muerte (AUC: 0.72; ρ<0.0001), mientras que para angina refractaria e intervención coronaria de urgencia, el score TIMI tuvo resultados estadísticamente signifcativos; sin embargo su AUC no presentó valores representativos. Para el reinfarto el score GRACE presentó valores estadísticos limítrofes con una AUC baja. Conclusión El score GRACE tiene una mejor capacidad pronóstica para muerte y reinfarto frente al score TIMI en pacientes con IMSEST y AI


The risk scores GRACE and TIMI are tools to estimate the prognosis of cardiovascular outcomes in patients with acute coronary syndrome. There are few comparisons between the two scores in Latin American populations. Objective To compare the discriminatory ability of GRACE and TIMI scores for cardiovascular events during hospitalization in patients with myocardial infarction without ST elevation (NSTEMI) and unstable angina (UA). Design Retrospective cohort. Subjects and settings 378 patients with a diagnosis of NSTEMI or UA attended during the period 2011-2014 in the Carlos Andrade Marín Hospital, Quito-Ecuador. Main measurements GRACE risk score, TIMI risk score, cardiovascular events (death, reinfarction, refractory angina and emergency coronary angioplasty) during hospitalization. Discriminatory capacity of the scores assessed by ROC curves. Results Male patients were the most frequent (78%). The frequency of cardiovascular events was: emergency coronary angioplasty (51%), refractory angina (12%), death (9%) and re-infarction (5%). The GRACE score showed higher and statistically signifcant results of area under the curve (AUC) for death (AUC: 0.72; ρ<0.0001), whereas for refractory angina and emergency coronary angioplasty the TIMI score had statistically signifcant results; however the AUC did not provide representative values. For re-infarction the GRACE score presented borderline statistical values with low AUC. Conclusion The GRACE score has a better prognostic value for death and reinfarction compared to TIMI score in patients with NSTEMI and AI


Subject(s)
Humans , Acute Coronary Syndrome , Non-ST Elevated Myocardial Infarction , Angina, Unstable , Prognosis , Hospitalization , Myocardial Infarction
17.
Genet Med ; 16(12): 922-31, 2014 Dec.
Article in English | MEDLINE | ID: mdl-24901346

ABSTRACT

PURPOSE: Reports of the use of whole-exome sequencing in clinical practice are limited. We report our experience with whole-exome sequencing in 115 patients in a single center and evaluate its feasibility and clinical usefulness in clinical care. METHODS: Whole-exome sequencing was utilized based on the judgment of three clinical geneticists. We describe age, gender, ethnicity, consanguinity, indication for testing, family history, insurance, laboratory results, clinician interpretation of results, and impact on patient care. RESULTS: Most patients were children (78.9%). The most common indications for testing were birth defects (24.3%) and developmental delay (25.2%). We identified four new candidate human disease genes and possibly expanded the disease phenotypes associated with five different genes. Establishing a diagnosis led to discontinuation of additional planned testing in all patients, screening for additional manifestations in eight, altered management in fourteen, novel therapy in two, identification of other familial mutation carriers in five, and reproductive planning in six. CONCLUSION: Our results show that whole-exome sequencing is feasible, has clinical usefulness, and allows timely medical interventions, informed reproductive choices, and avoidance of additional testing. Our results also suggest phenotype expansion and identification of new candidate disease genes that would have been impossible to diagnose by other targeted testing methods.


Subject(s)
DNA Mutational Analysis/methods , Exome , Adolescent , Adult , Child , Child, Preschool , Consanguinity , Developmental Disabilities/diagnosis , Developmental Disabilities/genetics , Female , Genetic Testing , High-Throughput Nucleotide Sequencing , Humans , Infant , Infant, Newborn , Karyotyping , Male , Mutation , Pedigree , Phenotype , Pregnancy , Reproducibility of Results , Retrospective Studies , Young Adult
18.
Int J Pediatr Endocrinol ; 2013(1): 11, 2013.
Article in English | MEDLINE | ID: mdl-23809065

ABSTRACT

BACKGROUND: Leri-Weill syndrome (LWS) is a genetic disorder caused by deletions or mutations in the SHOX gene or by deletions downstream of the gene and is classically characterized by short stature, mesomelic shortening of forearms and legs, and Madelung deformity. Correct identification of short stature homeobox-containing gene (SHOX) deficiency in children with growth problems is vital for appropriate initiation of growth hormone therapy. METHOD: We report a phenotypically normal 23 day old male infant born to a father diagnosed with Leri-Weill syndrome at age 12 years with a documented SHOX deletion on his X chromosome. The patient's fetal long bones had been found to be about three weeks delayed in growth on prenatal ultrasound during the second trimester. RESULTS: The infant underwent genetic evaluation at 23 days of life and was found to have a SHOX deletion on Yp11.32 identified using single nucleotide polymorphism microarray (SNP) analysis and confirmed by FISH using a SHOX gene probe. CONCLUSION: We report the case of a male infant diagnosed with Leri-Weill syndrome with an unusual documented inheritance between father and son due to crossover between X and Y chromosomes during paternal meiosis. Our case is the youngest patient in literature documented by FISH analysis to have an X to Y chromosome transfer and the first of these patients diagnosed prior to onset of short stature or Madelung deformity. Our patient was identified prior to growth failure and can now be monitored for growth abnormalities with the ability to implement growth augmentation therapy without delay. Our case highlights the importance of advising affected SHOX patients of risks to future offspring and supports screening off-spring of parents carrying SHOX abnormalities regardless of sex.

19.
Rheumatology (Oxford) ; 52(8): 1448-53, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23598443

ABSTRACT

OBJECTIVE: Cardiac neonatal lupus (cardiac-NL), initiated by surface binding of anti-Ro60 autoantibodies to apoptotic cardiocytes during development, activates the urokinase plasminogen activator/urokinase plasminogen activator receptor (uPA/uPAR) system. Subsequent accumulation of apoptotic cells and plasmin generation facilitates increased binding of anti-Ro60 by disrupting and cleaving circulating ß2-glycoprotein I (ß2GPI) thereby eliminating its protective effect. The association of soluble levels of components of the uPA/uPAR system with cardiac-NL was examined. METHODS: Levels of the uPA/uPAR system were assessed by ELISA in cord blood and immunohistological evaluation of autopsies. RESULTS: uPA, uPAR and plasminogen levels were each significantly higher in cord blood from cardiac-NL (n = 35) compared with non-cardiac-NL (n = 26) anti-Ro-exposed neonates: 3.3 ± 0.1 vs 1.9 ± 0.05 ng/ml (P < 0.0001), 6.6 ± 0.3 vs 2.1 ± 0.2 ng/ml (P < 0.0001) and 435 ± 34 vs 220 ± 19 ng/ml (P < 0.0001), respectively. In three twin pairs discordant for cardiac-NL, the twin with cardiac-NL had higher levels of uPA, uPAR and plasminogen than the unaffected twin (3.1 ± 0.1 vs 1.9 ± 0.05 ng/ml; P = 0.0086, 6.2 ± 1.4 vs 2.2 ± 0.7 ng/ml; P = 0.147 and 412 ± 61 vs 260 ± 27 ng/ml; P = 0.152, respectively). Immunohistological evaluation of three hearts from fetuses dying with cardiac-NL revealed macrophages and giant cells expressing uPA and plasminogen in the septal region. CONCLUSION: Increased soluble uPA, uPAR and plasminogen in cord blood and expression in affected tissue of fetuses with cardiac-NL supports the hypothesis that fetal cardiac injury is in part mediated by plasmin generation initiated by anti-Ro binding to the apoptotic cardiocyte.


Subject(s)
Fetal Blood/immunology , Fibrinolysin/immunology , Heart Diseases/immunology , Lupus Erythematosus, Systemic/congenital , Receptors, Urokinase Plasminogen Activator/immunology , Ribonucleoproteins/immunology , Antibodies, Antinuclear/immunology , Antibodies, Antinuclear/metabolism , Biomarkers , Case-Control Studies , Enzyme-Linked Immunosorbent Assay , Female , Fibrinolysin/metabolism , Heart Diseases/mortality , Heart Diseases/pathology , Humans , Immunohistochemistry , Infant, Newborn , Lupus Erythematosus, Systemic/immunology , Lupus Erythematosus, Systemic/mortality , Lupus Erythematosus, Systemic/pathology , Macrophages/immunology , Myocytes, Cardiac/immunology , Myocytes, Cardiac/metabolism , Pregnancy , Receptors, Urokinase Plasminogen Activator/blood , Reference Values , Ribonucleoproteins/metabolism , Survival Rate , Urokinase-Type Plasminogen Activator/blood , Urokinase-Type Plasminogen Activator/immunology
20.
J Environ Manage ; 117: 32-41, 2013 Mar 15.
Article in English | MEDLINE | ID: mdl-23339800

ABSTRACT

Simazine is a soil-active herbicide that has been applied worldwide in agricultural soils, being the second most commonly detected herbicide in groundwater and surface waters. Although its use has been restricted in many countries of Europe, it is still applied in many locations around the world in orchards, vineyards and forestry. Therefore, it is important to study its fate and transport in the environment. This paper investigates simazine transport in undisturbed bare soils from a vineyard at the Casablanca valley, Chile. In the study site, shallow groundwater tables (<1.0 m depth) and high simazine levels (>15 µg L(-1)) in the groundwater were observed and thus, there is potential for simazine to be transported further away through the saturated zone. The soils from the study site were characterized and the hydrodynamic transport parameters were determined. Column leaching experiments showed that the two-site chemical non-equilibrium model correctly represented simazine transport. It was found that 36.3% of the adsorption sites achieve instantaneous equilibrium and that the first-order kinetic rate of the non-equilibrium sites was 6.2 × 10(-3) h(-1). Hydrus 2D was used to predict the transport of simazine in the study site under natural field conditions. Simulation results showed that simazine concentrations at depths shallower than 2.1 m are above the maximum contaminant level of 4 µg L(-1) (defined by the U.S. Environmental Protection Agency). The timing of herbicide application was found to be important on simazine leaching and the main processes involved in simazine transport were degradation and adsorption, which accounted for 95.78 and 4.19% of the simulated mass of pesticide, respectively. A qualitative agreement in the timing and magnitude of simazine concentration was obtained between the simulations and the field data. Therefore, the model utilized in this investigation can be used to predict simazine transport and is a valuable tool to assess agricultural practices to minimize environmental impacts of simazine.


Subject(s)
Environmental Pollutants/analysis , Groundwater/chemistry , Herbicides/analysis , Simazine/analysis , Agriculture , Chile , Environmental Monitoring , Environmental Pollutants/chemistry , Herbicides/chemistry , Hydrodynamics , Simazine/chemistry , Vitis , Water Movements
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