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1.
Clin Cancer Res ; 28(12): 2633-2645, 2022 06 13.
Article in English | MEDLINE | ID: mdl-35381070

ABSTRACT

PURPOSE: Osteosarcoma, the most common bone malignancy in children, has a poor prognosis, especially when the tumor metastasizes to the lungs. Therefore, novel therapeutic strategies targeting both proliferation and metastasis of osteosarcoma are required. Podoplanin (PDPN) is expressed by various tumors and is associated with tumor-induced platelet activation via its interaction with C-type lectin-like receptor 2 (CLEC-2) on platelets. We previously found that PDPN contributed to osteosarcoma growth and metastasis through platelet activation; thus, in this study, we developed an anti-PDPN humanized antibody and evaluated its effect on osteosarcoma growth and metastasis. EXPERIMENTAL DESIGN: Nine osteosarcoma cell lines and two osteosarcoma patient-derived cells were collected, and we evaluated the efficacy of the anti-DPN-neutralizing antibody PG4D2 and the humanized anti-PDPN antibody AP201, which had IgG4 framework region. The antitumor and antimetastasis effect of PG4D2 and AP201 were examined in vitro and in vivo. In addition, growth signaling by the interaction between PDPN and CLEC-2 was analyzed using phospho-RTK (receptor tyrosine kinase) array, growth assay, or immunoblot analysis under the supression of RTKs by knockout and inhibitor treatment. RESULTS: We observed that PG4D2 treatment significantly suppressed tumor growth and pulmonary metastasis in osteosarcoma xenograft models highly expressing PDPN. The contribution of PDGFR activation by activated platelet releasates to osteosarcoma cell proliferation was confirmed, and the humanized antibody, AP201, suppressed in vivo osteosarcoma growth and metastasis without significant adverse events. CONCLUSIONS: Targeting PDPN with a neutralizing antibody against PDPN-CLEC-2 without antibody-dependent cell-mediated cytotoxicity and complement-dependent cytotoxicity is a novel therapeutic strategy for PDPN-positive osteosarcoma.


Subject(s)
Bone Neoplasms , Lectins, C-Type , Lung Neoplasms , Membrane Glycoproteins , Osteosarcoma , Antibodies, Neutralizing , Bone Neoplasms/drug therapy , Cell Line, Tumor , Humans , Lung Neoplasms/metabolism , Osteosarcoma/drug therapy
2.
Methods Mol Biol ; 955: 119-28, 2013.
Article in English | MEDLINE | ID: mdl-23132058

ABSTRACT

Once 2D crystals suitable for electron crystallography have been obtained, grid preparation for cryo-EM is a critical step in obtaining high-resolution structural information. Specimens have to be prepared in a manner that prevents dehydration and disruption of the crystals in the vacuum of the electron microscope. Sugar embedding is an effective way to preserve specimens in the native and hydrated state. Preparation of almost perfectly flat specimens is another prerequisite. Imperfect specimen flatness is a crucial problem in the recording of images and diffraction patterns at higher tilt angles because it causes the blurring of spots perpendicular to the tilt axis. In this chapter, we describe the protocols of preparing 2D crystal specimen for electron crystallographical data collection. These protocols cover preparation of a flat carbon support film by sparkless carbon evaporation, sugar embedding using back injection, and the recently developed carbon sandwich technique.


Subject(s)
Cryoelectron Microscopy/methods
3.
Proc Natl Acad Sci U S A ; 105(32): 11110-5, 2008 Aug 12.
Article in English | MEDLINE | ID: mdl-18682561

ABSTRACT

Prostaglandins (PG) are bioactive lipids produced from arachidonic acid via the action of cyclooxygenases and terminal PG synthases. Microsomal prostaglandin E synthase 1 (MPGES1) constitutes an inducible glutathione-dependent integral membrane protein that catalyzes the oxidoreduction of cyclooxygenase derived PGH(2) into PGE(2). MPGES1 has been implicated in a number of human diseases or pathological conditions, such as rheumatoid arthritis, fever, and pain, and is therefore regarded as a primary target for development of novel antiinflammatory drugs. To provide a structural basis for insight in the catalytic mechanism, we determined the structure of MPGES1 in complex with glutathione by electron crystallography from 2D crystals induced in the presence of phospholipids. Together with results from site-directed mutagenesis and activity measurements, we can thereby demonstrate the role of specific amino acid residues. Glutathione is found to bind in a U-shaped conformation at the interface between subunits in the protein trimer. It is exposed to a site facing the lipid bilayer, which forms the specific environment for the oxidoreduction of PGH(2) to PGE(2) after displacement of the cytoplasmic half of the N-terminal transmembrane helix. Hence, insight into the dynamic behavior of MPGES1 and homologous membrane proteins in inflammation and detoxification is provided.


Subject(s)
Dinoprostone/chemistry , Inflammation Mediators/chemistry , Intramolecular Oxidoreductases/chemistry , Lipid Bilayers/chemistry , Membrane Proteins/chemistry , Phospholipids/chemistry , Anti-Inflammatory Agents/chemistry , Anti-Inflammatory Agents/therapeutic use , Arachidonic Acid/chemistry , Arachidonic Acid/metabolism , Arthritis, Rheumatoid/drug therapy , Arthritis, Rheumatoid/enzymology , Arthritis, Rheumatoid/genetics , Catalysis , Dinoprostone/genetics , Dinoprostone/metabolism , Fever/drug therapy , Fever/enzymology , Fever/genetics , Glutathione/chemistry , Glutathione/metabolism , Humans , Inflammation Mediators/metabolism , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/metabolism , Lipid Bilayers/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Mutagenesis, Site-Directed , Oxidation-Reduction , Pain/drug therapy , Pain/enzymology , Pain/genetics , Phospholipids/genetics , Phospholipids/metabolism , Prostaglandin H2/chemistry , Prostaglandin H2/genetics , Prostaglandin H2/metabolism , Prostaglandin-E Synthases , Protein Structure, Quaternary , Protein Structure, Secondary , Structure-Activity Relationship
4.
Proc Natl Acad Sci U S A ; 104(51): 20256-61, 2007 Dec 18.
Article in English | MEDLINE | ID: mdl-18077374

ABSTRACT

ATP synthesis by V-ATPase from the thermophilic bacterium Thermus thermophilus driven by the acid-base transition was investigated. The rate of ATP synthesis increased in parallel with the increase in proton motive force (PMF) >110 mV, which is composed of a difference in proton concentration (DeltapH) and the electrical potential differences (DeltaPsi) across membranes. The optimum rate of synthesis reached 85 s(-1), and the H(+)/ATP ratio of 4.0 +/- 0.1 was obtained. ATP was synthesized at a considerable rate solely by DeltapH, indicating DeltaPsi was not absolutely required for synthesis. Consistent with the H(+)/ATP ratio, cryoelectron micrograph images of 2D crystals of the membrane-bound rotor ring of the V-ATPase at 7.0-A resolution showed the presence of 12 V(o)-c subunits, each composed of two transmembrane helices. These results indicate that symmetry mismatch between the rotor and catalytic domains is not obligatory for rotary ATPases/synthases.


Subject(s)
Adenosine Triphosphate/biosynthesis , Thermus thermophilus/enzymology , Vacuolar Proton-Translocating ATPases/chemistry , Catalytic Domain , Cryoelectron Microscopy , Crystallization , Hydrogen/chemistry , Hydrogen-Ion Concentration , Protein Subunits/chemistry
6.
J Mol Biol ; 360(5): 934-45, 2006 Jul 28.
Article in English | MEDLINE | ID: mdl-16806268

ABSTRACT

Synthesis of mediators of fever, pain and inflammation as well as protection against reactive molecules and oxidative stress is a hallmark of the MAPEG superfamily (membrane associated proteins in eicosanoid and glutathione metabolism). The structure of a MAPEG member, rat microsomal glutathione transferase 1, at 3.2 A resolution, solved here in complex with glutathione by electron crystallography, defines the active site location and a cytosolic domain involved in enzyme activation. The glutathione binding site is found to be different from that of the canonical soluble glutathione transferases. The architecture of the homotrimer supports a catalytic mechanism involving subunit interactions and reveals both cytosolic and membraneous substrate entry sites, providing a rationale for the membrane location of the enzyme.


Subject(s)
Glutathione Transferase/chemistry , Intracellular Membranes/enzymology , Lipid Bilayers/chemistry , Models, Molecular , Oxidative Stress , Amino Acid Sequence , Animals , Binding Sites , Catalytic Domain , Conserved Sequence , Dimerization , Glutathione/chemistry , Glutathione/metabolism , Glutathione Transferase/metabolism , Inactivation, Metabolic , Microsomes, Liver/enzymology , Molecular Sequence Data , Protein Subunits/chemistry , Protein Subunits/metabolism , Rats , Sequence Homology, Amino Acid
7.
J Mol Biol ; 355(4): 628-39, 2006 Jan 27.
Article in English | MEDLINE | ID: mdl-16325200

ABSTRACT

Aquaporin-4 (AQP4) is the predominant water channel in the mammalian brain and an important drug target for treatment of cerebral edema, bipolar disorder and mesial temporal lobe epilepsy. We determined the AQP4 structure by electron crystallography of double-layered, two-dimensional (2D) crystals. The structure allows us to discuss how the expression ratio between the long and short AQP4 splicing variant can determine the size of in vivo orthogonal arrays. Furthermore, AQP4 contains a short 3(10) helix in an extracellular loop, which mediates weak but specific interactions between AQP4 molecules in adjoining membranes. This finding suggests a previously unexpected role for AQP4 in cell adhesion. This notion was corroborated by expression of AQP4 in L-cells, which resulted in clustering of the cells. Our AQP4 structure thus enables us to propose models for the size regulation of orthogonal arrays and channel-mediated cell adhesion.


Subject(s)
Aquaporin 4/chemistry , Aquaporin 4/metabolism , Amino Acid Sequence , Animals , Aquaporin 4/genetics , Aquaporin 4/ultrastructure , Cell Adhesion , Conserved Sequence , Crystallography, X-Ray , Humans , L Cells , Mice , Microscopy, Electron, Transmission , Models, Molecular , Molecular Sequence Data , Protein Binding , Protein Structure, Quaternary , Protein Structure, Tertiary , Rats , Sequence Alignment , Sequence Homology, Amino Acid
8.
J Struct Biol ; 146(3): 325-33, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15099574

ABSTRACT

Image shift due to beam-induced specimen charging has become the most severe problem in electron microscopy for imaging two-dimensional (2D) crystals of biological macromolecules, especially in the case of highly tilted specimens. Image shift causes diffraction spots perpendicular to the tilt axis to disappear even at medium or low resolution. The yield of good images from tilted specimens prepared on a single layer of continuous carbon support film is therefore very low. In this paper, we have used 2D crystals of aquaporin-4 to investigate the effect of a carbon sandwich preparation method on specimen charging. We find that a larger number of images show sharp diffraction spots perpendicular to the tilt axis if crystals are placed in between two sheets of carbon film as compared to images taken from specimens prepared by the conventional single carbon support film technique. Our results demonstrate that the reproducible carbon sandwich preparation technique overcomes the severe specimen charging problem and thus has the potential to significantly speed up structure analysis by electron crystallography.


Subject(s)
Carbon , Cryoelectron Microscopy/methods , Specimen Handling/methods , Aquaporin 4 , Aquaporins/chemistry , Crystallization , Specimen Handling/standards
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