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1.
Oncogene ; 26(11): 1626-35, 2007 Mar 08.
Article in English | MEDLINE | ID: mdl-16964288

ABSTRACT

Evidence exists that BRCA2 carriers may have an elevated risk of breast, ovarian, colon, prostate, and pancreatic cancer. In general, carriers are defined as individuals with protein truncating mutations within the BRCA2 gene. Many Brca2 knockout lines have been produced and characterized in the mouse. We previously produced a rat Brca2 knockout strain in which there is a nonsense mutation in exon 11 between BRC repeats 2 and 3, and a truncated protein is produced. Interestingly, while such a mutation in homozygous mice would lead to limited survival of approximately 3 months, the Brca2-/- rats are 100% viable and the vast majority live to over 1 year of age. Brca2-/- rats show a phenotype of growth inhibition and sterility in both sexes. Aspermatogenesis in the Brca2-/- rats is due to a failure of homologous chromosome synapsis. Long-term phenotypes include underdeveloped mammary glands, cataract formation and lifespan shortening due to the development of tumors and cancers in multiple organs. The establishment of the rat Brca2 knockout model provides a means to study the role of Brca2 in increasing cancer susceptibility and inducing a novel ocular phenotype not previously associated with this gene.


Subject(s)
Genes, BRCA2 , Mammary Neoplasms, Experimental/genetics , Animals , Animals, Genetically Modified , Base Sequence , DNA Primers , Disease Models, Animal , Female , Male , Rats , Rats, Sprague-Dawley
2.
Oncogene ; 25(36): 5011-7, 2006 Aug 17.
Article in English | MEDLINE | ID: mdl-16568087

ABSTRACT

Identification of high-penetrance breast cancer genes such as Brca1 has been accomplished by analysing familial cases. However, these genes occur at low frequency and do not account for the majority of genetic risk. Identification of low-penetrance alleles that occur commonly in populations may benefit from unbiased genome-wide screening. One such approach uses linkage studies in rodent models to identify homologous human candidates. The Wistar Kyoto (WKy) rat is resistant to mammary carcinomas induced with 7,12-dimethybenz[a]anthracene (DMBA), whereas the Wistar Furth (WF) strain is susceptible. Previous genome-wide linkage studies in crosses of these strains identified three WKy resistance quantitative trait loci, Mcs5, Mcs6 and Mcs8, and one predicted to increase susceptibility, Mcs7. The Mcs7 region on rat chromosome 10 (RNO10) is orthologous to human 17q, a common site of genetic aberrations in breast cancer. Here, we establish the independent phenotype conferred by Mcs7 using congenic rats carrying the WKy Mcs7 locus on a WF background. Tumor multiplicity was significantly higher ( approximately 50%) in DMBA-treated congenics homozygous and heterozygous for the WKy allele at the Mcs7 locus, compared to controls. We also investigated allelic imbalance (AI) in mammary carcinomas from (WKy x WF)F1 rats and Mcs7 heterozygous congenics. Of the four known WKy Mcs loci tested, only Mcs7 displayed AI. The pattern of AI in carcinomas from both F1 and Mcs7 congenic rats was similar, suggesting a WF allelic loss. Together, these data suggest that one or more breast cancer-related genes are located within the dominantly acting WKy allele at the Mcs7 locus.


Subject(s)
Alleles , Genetic Predisposition to Disease , Mammary Neoplasms, Experimental/genetics , Quantitative Trait Loci , Animals , Base Sequence , DNA Primers , Loss of Heterozygosity , Mammary Neoplasms, Experimental/pathology , Rats , Rats, Wistar
3.
Proc Natl Acad Sci U S A ; 102(12): 4252-7, 2005 Mar 22.
Article in English | MEDLINE | ID: mdl-15755808

ABSTRACT

Over 15% of the data sets catalogued in the Gene Expression Omnibus Database involve RNA samples that have been pooled before hybridization. Pooling affects data quality and inference, but the exact effects are not yet known because pooling has not been systematically studied in the context of microarray experiments. Here we report on the results of an experiment designed to evaluate the utility of pooling and the impact on identifying differentially expressed genes. We find that inference for most genes is not adversely affected by pooling, and we recommend that pooling be done when fewer than three arrays are used in each condition. For larger designs, pooling does not significantly improve inferences if few subjects are pooled. The realized benefits in this case do not outweigh the price paid for loss of individual specific information. Pooling is beneficial when many subjects are pooled, provided that independent samples contribute to multiple pools.


Subject(s)
Oligonucleotide Array Sequence Analysis/methods , Analysis of Variance , Animals , Female , Gene Expression Profiling/methods , Gene Expression Profiling/statistics & numerical data , Nicotinic Acids/pharmacology , Oligonucleotide Array Sequence Analysis/statistics & numerical data , RNA/genetics , Rats , Rats, Inbred WF , Retinoid X Receptors/agonists , Tetrahydronaphthalenes/pharmacology
4.
Genetics ; 157(1): 331-9, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11139513

ABSTRACT

In this study, the Wistar-Kyoto (WKy) rat was genetically characterized for loci that modify susceptibility to mammary carcinogenesis. We used a genetic backcross between resistant WKy and susceptible Wistar-Furth (WF) rats as a panel for linkage mapping to genetically identify mammary carcinoma susceptibility (Mcs) loci underlying the resistance of the WKy rat. Rats were phenotyped for DMBA-induced mammary carcinomas and genotyped using microsatellite markers. To detect quantitative trait loci (QTL), we analyzed the genome scan data under both parametric and nonparametric distributional assumptions and used permutation tests to calculate significance thresholds. A generalized linear model analysis was also performed to test for interactions between significant QTL. This methodology was extended to identify interactions between the significant QTL and other genome locations. Chromosomes 5, 7, 10, and 14 were found to contain significant QTL, termed Mcs5, Mcs6, Mcs7, and Mcs8, respectively. The WKy alleles of Mcs5, -6, and -8 are associated with mammary carcinoma resistance; the WKy allele of Mcs7 is associated with an increased incidence of mammary cancer. In addition, we identified an interaction between Mcs8 and a region on chromosome 6 termed Mcsm1 (modifier of Mcs), which had no significant main effect on mammary cancer susceptibility in this genetic analysis.


Subject(s)
Genes, Tumor Suppressor , Mammary Neoplasms, Experimental/genetics , Oncogenes , 9,10-Dimethyl-1,2-benzanthracene/toxicity , Animals , Carcinogens/toxicity , Crosses, Genetic , Female , Genotype , Humans , Male , Mammary Neoplasms, Experimental/chemically induced , Models, Genetic , Quantitative Trait, Heritable , Rats , Rats, Inbred WF , Rats, Inbred WKY
5.
Carcinogenesis ; 21(10): 1917-22, 2000 Oct.
Article in English | MEDLINE | ID: mdl-11023551

ABSTRACT

Carcinoma induction in the rat mammary carcinogenesis model is age dependent. In this study, mammary cancer susceptibility and ras gene activation were investigated in rats exposed to N:-methyl-N:-nitrosourea (NMU) at 2, 6, 8 and 15 months. Animals were resistant to NMU-induced mammary tumor development when exposed at 6 and 8 months of age, whereas a significant number of mammary carcinomas developed in animals exposed to NMU at 2 and 15 months of age. G35-->A35 activating mutations in the Harvey ras gene were found only in mammary carcinomas from rats exposed to NMU at 2 months of age, but not in tumors that developed in animals exposed to NMU at 15 months of age. No G35-->A35 activating mutations were present in the Kirsten ras gene of any of the mammary tumors. Additional analysis of exons 1 and 2 of the Harvey ras gene from mammary carcinomas that developed in animals exposed to NMU at 15 months of age did not reveal any other activating mutations in this gene. In mammary carcinomas from animals exposed to NMU at 2 months of age, the frequency of mammary carcinomas with mutations in the Harvey ras gene was independent of the time from which the tumor first appeared. Therefore, age at the time of carcinogen exposure plays a critical role in both breast cancer susceptibility and the molecular events that contribute to mammary carcinoma development.


Subject(s)
Aging/genetics , Carcinogens/toxicity , Cocarcinogenesis , Genes, ras/genetics , Mammary Neoplasms, Experimental/genetics , Methylnitrosourea/toxicity , Animals , Female , Gene Expression Regulation, Neoplastic , Genetic Predisposition to Disease , Mammary Neoplasms, Experimental/chemically induced , Mammary Neoplasms, Experimental/pathology , Mutation , Rats , Rats, Inbred WF , Transcriptional Activation
6.
Mamm Genome ; 10(7): 687-91, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10384040

ABSTRACT

Seventy-six novel microsatellite markers with various simple sequence repeat (SSR) motifs are reported in this paper. They were generated on the basis of non-radioactive library screening procedures from flow-sorted rat Chromosome (Chr) 5-specific DNA, and were mapped in three rat backcross populations. Fifty-four of these markers mapped to Chr 5, while the other 22 mapped to other chromosomes of the rat genome. The marker D3Uwm8 is a new microsatellite marker for the rat syndecan 4 (ryudocan) gene. A genotyping protocol based on agarose gel electrophoresis is also provided in this paper.


Subject(s)
Chromosome Mapping , Genetic Linkage , Genetic Markers/genetics , Animals , Crosses, Genetic , Genotype , Microsatellite Repeats , Molecular Sequence Data , Polymerase Chain Reaction , Rats , Rats, Inbred Strains
7.
Endocrinology ; 140(6): 2659-71, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10342856

ABSTRACT

The Wistar-Kyoto (WKY) rat strain expresses high levels of beta-casein in its virgin mammary glands. We found that the onset of beta-casein overexpression (BCO) occurs at 6 weeks of age, with morphological differentiation of the mammary gland detectable at 7 weeks of age. BCO was previously shown to be cell autonomous; however, we found that adrenal and ovarian hormones were permissive and necessary for the expression of the BCO phenotype, indicating that the genetic variation that initiates BCO from within the mammary epithelium can only manifest BCO in the presence of virgin hormone levels. Sequencing of the WKY and Wistar-Furth (WF) rat beta-casein promoters showed them to be identical. Culture of primary rat mammary epithelial cells (RMEC) under lactogenic conditions revealed that expression of beta-casein was independent of epidermal growth factor (EGF) in RMEC from virgin WKYv, but was dependent in WFv, RMEC. RMEC from a pregnant WFp responded similarly to WKYv RMEC, suggesting that EGF-independent beta-casein expression occurs naturally in differentiated rat mammary epithelium. However, induction of beta-casein expression in RMEC from immature WKY rats was also independent of EGF, indicating that the induction as well as maintenance of BCO do not require EGF. We suggest that an EGF-independent signaling pathway, arising from a trans-acting inherited effector(s), underlies BCO.


Subject(s)
Caseins/biosynthesis , Epidermal Growth Factor/pharmacology , Mammary Glands, Animal/cytology , Animals , Cell Differentiation , Cell Division , Epithelial Cells/physiology , Female , Glucocorticoids/physiology , Gonadal Steroid Hormones/physiology , Mammary Glands, Animal/ultrastructure , Progesterone/pharmacology , Prolactin/pharmacology , Rats , Rats, Inbred WF , Rats, Inbred WKY , Sexual Maturation
8.
Cancer Res ; 59(8): 1917-28, 1999 Apr 15.
Article in English | MEDLINE | ID: mdl-10213501

ABSTRACT

The mechanisms of action of the anticancer agent perillyl alcohol (POH), presently in Phase II clinical trials, were investigated in advanced rat mammary carcinomas. Gross and ultrastructural morphology of POH-mediated tumor regression indicated that apoptosis accounted for the marked reduction in the epithelial compartment. Characterization of cell growth and death indices revealed that apoptosis was induced within 48 h of chemotherapy, before the induction of cytostasis. RNA expression studies, based on a multiplexed-nuclease protection assay, demonstrated that cell cycle- and apoptosis-related genes were differentially expressed within 48 h of POH treatment; p21(Cip1/WAF1), bax, bad, and annexin I were induced; cyclin E and cyclin-dependent kinase 2 were repressed; and bcl-2 and p53 were unchanged. Next, a potential role for transforming growth factor beta (TGF-beta) signaling in POH-mediated carcinoma regression was explored. RNA expression studies, again based on a multiplexed-nuclease protection assay, showed that TGF-beta-related genes were induced and temporally regulated during POH treatment: (a) c-jun and c-fos were transiently induced within 12 h of chemotherapy; (b) TGF-beta1 was induced within 24 h of chemotherapy; (c) the mannose 6-phosphate/insulin-like growth factor II receptor and the TGF-beta type I and II receptors were induced within 48 h of chemotherapy; and (d) smad3 was induced during active carcinoma regression. In situ protein expression studies, based on fluorescence-immunohistochemistry in concert with confocal microscopy, confirmed up-regulation and demonstrated colocalization of TGF-beta1, the mannose 6-phosphate/insulin-like growth factor II receptor, the TGF-beta type I and II receptors, and Smad2/Smad3 in epithelial cells. Nuclear localization of Smad2/Smad3 indicated that the TGF-beta signaling pathway was activated in regressing carcinomas. Subpopulations of Smad2/Smad3-positive and apoptotic nuclei colocalized, indicating a role for Smads in apoptosis. Thus, Smads may serve as a potential biomarker for anticancer activity. Importantly, none of the POH-mediated anticancer activities were observed in normal mammary gland.


Subject(s)
Antineoplastic Agents/pharmacology , Apoptosis , Mammary Neoplasms, Animal/metabolism , Monoterpenes , Signal Transduction/drug effects , Terpenes/pharmacology , Transforming Growth Factor beta/metabolism , Animals , Antineoplastic Agents/therapeutic use , Cell Cycle/drug effects , Female , Mammary Neoplasms, Animal/drug therapy , Mammary Neoplasms, Animal/pathology , Mammary Neoplasms, Animal/ultrastructure , RNA, Neoplasm/metabolism , Rats , Rats, Wistar , Terpenes/therapeutic use
9.
Mol Carcinog ; 24(1): 47-56, 1999 Jan.
Article in English | MEDLINE | ID: mdl-10029410

ABSTRACT

In this paper, patterns of allelic imbalances (Als) in chemically induced rat mammary, colon, and bladder tumors from (Wistar Furth x Fischer 344)F1 rats are described and compared. Male F1 rats were administered azoxymethane (AOM), and colon tumors were collected at 58 wk after treatment. Female F1 rats were given either N-nitroso-N-methylurea (NMU) or N-butyl-(hydroxybutyl)-nitrosoamine (BBN), and mammary and bladder tumors were collected at 15 and 52 wk after treatment, respectively. DNA was extracted from a subset of 18 of the largest tumors from each group, and a genome scan was performed by using polymerase chain reaction and 90 polymorphic microsatellite markers. Als, such as loss of heterozygosity, gene duplication, and microsatellite instability, were observed at low frequencies in all of the tumor models. Thirty random Als were observed in the AOM-induced colon tumors but only four in the NMU-induced mammary tumors. In both these models, all the tumors were classified as adenocarcinomas, and most of the Als observed were confined to single tumors with atypical histopathology. In contrast, 27 random Als were identified in the BBN-induced bladder tumors. Als were observed in both transitional-cell carcinomas and papillomas, although most were in the carcinomas. Statistical analysis of the Al data revealed no significant nonrandom Als within or among the tumor models, although several of the infrequently observed Al events identified in the rat tumors may also be observed in the corresponding human tumor type.


Subject(s)
Carcinogens/toxicity , Chromosome Mapping , Colonic Neoplasms/genetics , Loss of Heterozygosity , Mammary Neoplasms, Experimental/genetics , Microsatellite Repeats , Point Mutation , Urinary Bladder Neoplasms/genetics , Alleles , Animals , Azoxymethane/toxicity , Butylhydroxybutylnitrosamine/toxicity , Codon , Colonic Neoplasms/chemically induced , Colonic Neoplasms/pathology , Female , Genes, ras , Genetic Markers , Humans , Male , Mammary Neoplasms, Experimental/chemically induced , Mammary Neoplasms, Experimental/pathology , Methylnitrosourea/toxicity , Rats , Rats, Inbred F344 , Rats, Inbred WF , Urinary Bladder Neoplasms/chemically induced , Urinary Bladder Neoplasms/pathology
10.
Int J Cancer ; 79(6): 565-72, 1998 Dec 18.
Article in English | MEDLINE | ID: mdl-9842963

ABSTRACT

We have previously shown that neu oncogene-initiated rat mammary carcinomas uniquely over-express neu-related lipocalin (NRL), a member of the calycin protein superfamily. Here, we characterize the putative human homolog of NRL, neutrophil gelatinase-associated lipocalin (NGAL). ngal gene expression was found at moderate levels in only 2 of 17 human tissues examined, breast and lung. When breast cancers were examined for NGAL mRNA and protein levels, they were found to exhibit heterogeneous expression. NGAL levels varied in these tumors from undetectable to exceeding those in normal breast parenchyma. Immuno-histochemical analysis confirmed the presence of NGAL within breast carcinoma cells but detected only low levels of this protein in normal ductal epithelium. In contrast, large amounts of the protein were localized to the lumen of normal breast ducts in the vicinity of NGAL-expressing tumors. Interestingly, unlike NRL in rat mammary carcinomas, no significant association between NGAL expression and HER-2/neu activation was found in human breast tumors. In contrast, a significant correlation between NGAL expression in breast cancer was found with several other markers of poor prognosis, including estrogen and progesterone receptor-negative status and high proliferation (S-phase fraction). NGAL levels were stratified as high or low in breast cancers from a cohort of node-positive patients with known outcome. No significant association between NGAL expression and disease-free or overall survival was observed.


Subject(s)
Acute-Phase Proteins , Breast Neoplasms/metabolism , Carrier Proteins/metabolism , Oncogene Proteins , Breast/metabolism , Cell Cycle , Gene Expression Regulation, Neoplastic , Genes, erbB-2 , Humans , Immunohistochemistry , Lipocalin-2 , Lipocalins , Neutrophils , Proto-Oncogene Proteins , Receptors, Estrogen/metabolism , Receptors, Progesterone/metabolism , Tumor Cells, Cultured
11.
Stat Med ; 17(13): 1425-45, 1998 Jul 15.
Article in English | MEDLINE | ID: mdl-9695190

ABSTRACT

This paper concerns the statistical analysis of certain binary data arising in molecular studies of cancer. In allelic-loss experiments, tumour cell genomes are analysed at informative molecular marker loci to identify deleted chromosomal regions. The resulting binary data are used to infer properties of putative suppressor genes, genes involved in normal cell cycling. Various factors can complicate this inference, including background loss of heterozygosity, spatial (that is, within chromosome) dependence of the binary responses, non-informativeness of markers, covariates such as protein levels or tumour histology, heterogeneity of cells within tumours, and measurement error. We focus on the first three factors, discussing methods for statistical inference that separate background loss from significant loss. We outline the extension to other inferences, such as comparison questions and the relationship to covariates. Using characteristic features of tumourigenesis, we present a framework for the stochastic modelling of allelic-loss data, and build models within this framework; in particular, we propose a simple model that has chromosome breaks at locations of a Poisson process, and preferential selection cells with inactivated suppressor genes. We illustrate these methods on allelic-loss data from induced rat mammary tumours and human bladder cancers.


Subject(s)
Data Interpretation, Statistical , Loss of Heterozygosity , Neoplasms/genetics , Animals , Cell Transformation, Neoplastic/genetics , Chromosome Breakage , Chromosome Deletion , Female , Genes, Tumor Suppressor/genetics , Genetic Markers/genetics , Humans , Mammary Neoplasms, Experimental/genetics , Poisson Distribution , Rats , Stochastic Processes , Urinary Bladder Neoplasms/genetics
12.
Mamm Genome ; 9(8): 622-8, 1998 Aug.
Article in English | MEDLINE | ID: mdl-9680381

ABSTRACT

Fifty-five novel rat microsatellite markers were isolated from libraries specific for rat chromosomes (Chrs) 1, 2, and 7. The markers were mapped in three backcross rat populations. Thirty of these markers mapped to Chrs 1, 2, or 7, while the other 25 mapped to other chromosomes. New markers for two genes, liver-specific transporter gene (Livtr) and insulin-responsive glucose transporter (Glut4), were also mapped to rat Chrs 9 and 10, respectively. Three provisionally assigned markers from previous studies were also confirmed. Detailed methodologies for the generation and enrichment of clones containing repeat sequences and for the isolation of chromosome-specific markers are presented, since they represent unique combinations and modifications of previous protocols. Such methods and the newly presented markers should be useful for both specific and general mapping studies in the rat.


Subject(s)
Chromosome Mapping , Gene Library , Microsatellite Repeats , Muscle Proteins , Rats, Inbred Strains/genetics , Animals , Base Sequence , Carrier Proteins/genetics , Crosses, Genetic , Female , Genetic Linkage , Genetic Markers , Glucose Transporter Type 4 , Liver/metabolism , Male , Molecular Sequence Data , Monosaccharide Transport Proteins/genetics , Polymerase Chain Reaction , Rats , Rats, Inbred F344/genetics , Rats, Inbred WF/genetics , Rats, Inbred WKY/genetics
13.
Genetics ; 149(1): 289-99, 1998 May.
Article in English | MEDLINE | ID: mdl-9584103

ABSTRACT

We have used a rat model of induced mammary carcinomas in an effort to identify breast cancer susceptibility genes. Using genetic crosses between the carcinoma-resistant Copenhagen (COP) and carcinoma-sensitive Wistar-Furth rats, we have confirmed the identification of the Mcs1 locus that modulates tumor number. We have now also identified two additional loci, Mcs2 and Mcs3. These three loci map to chromosomes 2, 7, and 1, respectively, and interact additively to suppress mammary carcinoma development in the COP strain. They are responsible for a major portion of the tumor-resistant phenotype of the COP rat. No loss of heterozygosity was observed surrounding the three loci. A fourth COP locus, Mcs4, has also been identified on chromosome 8 and acts in contrast to increase the number of carcinomas. These results show that mammary carcinoma susceptibility in the COP rat is a polygenic trait. Interestingly, a polymorphism in the human genomic region homologous to the rat Mcs4 region is associated with an increased breast cancer risk in African-American women. The isolation of the Mcs genes may help elucidate novel mechanisms of carcinogenesis, provide information important for human breast cancer risk estimation, and also provide unique drug discovery targets for breast cancer prevention.


Subject(s)
Mammary Neoplasms, Animal/genetics , Alleles , Animals , Crosses, Genetic , Disease Models, Animal , Female , Gene Dosage , Genetic Linkage , Genetic Markers , Genetic Predisposition to Disease , Loss of Heterozygosity , Rats , Rats, Inbred WF
14.
Cytogenet Cell Genet ; 79(3-4): 176-8, 1997.
Article in English | MEDLINE | ID: mdl-9605844

ABSTRACT

We have mapped 11 novel, anonymous genetic markers to rat chromosome 2. The rat ceruloplasmin gene (Cp) had been previously mapped to chromosomes 2 and 7q11-->q13 by two different methods. To resolve the assignment and to localize the Cp gene on the rat genetic linkage map, we used linkage analysis to confirm that rat Cp lies on chromosome 2.


Subject(s)
Ceruloplasmin/genetics , Genetic Linkage , Genetic Markers , Rats/genetics , Animals , Female , Male , Rats, Inbred F344 , Rats, Wistar
15.
Mol Carcinog ; 17(3): 134-43, 1996 Nov.
Article in English | MEDLINE | ID: mdl-8944073

ABSTRACT

To identify and compare the genetic lesions associated with tumorigenesis in rats carrying the mammary carcinoma suppressor (MCS) 1 gene, we induced mammary carcinomas in (Wistar Furth (WF) x Copenhagen (Cop))F1 rats by using either 7,12-dimethylbenz[a]anthracene (DMBA) or radiation. The tumors were screened for allelic imbalances by using polymerase chain reaction and 65 polymorphic microsatellite markers spanning the genome. No allelic imbalance was detected at the mapped location of MCS-1 on chromosome 2; however, a scan of the genome revealed random allelic imbalances in the radiation-induced tumors. In addition, non-random loss of heterozygosity (LOH) on chromosome 1 in the DMBA-induced tumors was documented. We then screened three other subsets of DMBA- and radiation-induced mammary carcinomas from (WF x Fischer (F344))F1, (Wistar Kyoto x F344)F1, and (F344 x Cop)F1 rats for imbalance on chromosomes 1 and 2. No allelic imbalance was detected in the MCS-1 region of chromosome 2 in any of the tumors screened. Nonrandom imbalance on chromosome 1 was detected but only in the DMBA-induced tumors from the (F344 x Cop)F1 rats. Thus, only Cop-derived F1 rats have mammary tumors with the chromosome 1 imbalance; however, the imbalance does not favor the Cop parental allele. We also analyzed the DMBA-induced tumors with LOH at chromosome 1 for Ha-ras codon 61 mutation and found no association. These results suggest that loss of the MCS-1 Cop allele is not required for tumor formation, that the genetic background of the F1 rat appears to influence the type of genetic lesion identified in the mammary tumors, and that there is no association between Ha-ras codon 61 mutation and chromosome 1 imbalance in our model system.


Subject(s)
Alleles , Genes, Tumor Suppressor , Mammary Neoplasms, Experimental/etiology , Mammary Neoplasms, Experimental/genetics , Neoplasms, Radiation-Induced/etiology , Neoplasms, Radiation-Induced/genetics , 9,10-Dimethyl-1,2-benzanthracene , Animals , Carcinogens , Chromosomes , DNA, Neoplasm/genetics , Disease Susceptibility , Female , Gene Deletion , Genes, ras , Genome , Heterozygote , Mammary Neoplasms, Experimental/pathology , Mutation , Neoplasms, Radiation-Induced/pathology , Phenotype , Rats , Rats, Inbred F344 , Rats, Inbred WKY , Species Specificity
16.
Carcinogenesis ; 17(8): 1561-6, 1996 Aug.
Article in English | MEDLINE | ID: mdl-8761410

ABSTRACT

The breast cancer gene BRCA1 has previously been cloned from both human and mouse. We cloned a fragment of the rat Brca1 homologue in order to map it and explore its biological function. Partial cDNA fragments of the rat Brca1 homologue were isolated by RT-PCR. Sequence analysis revealed that the RING-finger domain is well conserved among rat, mouse and human. Rat Brca1 mRNA was expressed in most tissues studied with the highest level in testis, consistent with studies in human and mouse. Next, intron 6-containing DNA fragments were amplified by PCR from WKY and WF rat strains. The splicing sites between exon 6 and exon 7 are conserved between rat and human. Partial sequencing of the rat Brca1 intron 6 revealed a polymorphism of a pentanucleotide TTTTG repeat between the WKY and WF strains. With this intragenic microsatellite marker, we were able to map precisely the rat Brca1 gene to chromosome 10 using a genetic linkage study of (WKY x WF)F1 x WF backcross rats. Brca1 cosegregates with marker BAND3A, and is flanked by R5123 and R5842. Using this polymorphic marker, we also investigated the loss of heterozygosity (LOH) of the Brca1 microsatellite marker in carcinogen- or radiation-induced mammary carcinomas in (WF x F344)F1 female rats. No LOH or somatic microsatellite instability was detected in 18 DMBA-induced tumors studied. Only one LOH of the F344 allele was observed in 26 radiation-induced tumors tested. Ribonuclease protection assays demonstrated that Brca1 mRNA levels are similar in normal rat mammary glands and mammary carcinomas of various etiologies, including those induced by DMBA, NMU, activated-neu and activated-ras oncogenes.


Subject(s)
Neoplasm Proteins/genetics , Transcription Factors/genetics , Alleles , Amino Acid Sequence , Animals , BRCA1 Protein , Base Sequence , Chromosome Mapping , Cloning, Molecular , DNA, Complementary , Genetic Markers , Humans , Mammary Glands, Animal/metabolism , Mammary Neoplasms, Experimental/genetics , Molecular Sequence Data , Polymerase Chain Reaction , Polymorphism, Genetic , RNA, Messenger/genetics , RNA, Messenger/metabolism , Rats , Rats, Inbred Strains , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid , Species Specificity
17.
J Cell Biochem Suppl ; 25: 37-40, 1996.
Article in English | MEDLINE | ID: mdl-9027596

ABSTRACT

Individual genetically determined susceptibility to cancer as well as acquired epigenetic and genetic organ specific alterations are important considerations in choosing target populations for chemopreventive trials. These individual epigenetic and genetic alterations can also serve as potential biomarkers for chemoprevention clinical trials. In order to model these potential markers for chemoprevention investigations, we are examining a series of interrelated rat models. Inbred rats vary in their susceptibility to mammary cancer induction by environmental agents. For example, the WF strain is highly susceptible to chemically induced mammary cancer while the Cop rat is almost completely resistant. The F344 is intermediate in susceptibility to chemically induced mammary cancer. These differential susceptibilities are inherited in a dominant pattern. For example, resistance is due to the inheritance of Mcs gene(s) which likely act by altering the differentiation lineage of mammary epithelial cells. As tumors form in the mammary glands of these rats, they acquire additional epigenetic and genetic alterations. Epigenetic initiation is a very frequent cellular event following carcinogen exposure which may predispose cells to genetic change including allelic imbalance. For example, following a standard dose of NMU or DMBA over 1% of cells are epigenetically initiated. During the carcinogenesis process, initiated cells may acquire genetic change such as oncogene activation and allelic imbalance. Interestingly, the pattern of allelic imbalance appears to be an inherited trait. For example, a non-random loss of heterozygosity (LOH) in rat chromosome 1 following DMBA only occurs in certain strains, such as Cop rats. Interestingly this change does not occur following initiation by ionizing radiation. It will thus be important to identify these epigenetic and genetic events which underlie mammary carcinogenesis as well as determine their patterns of inherited predisposition and temporal occurrence. Such knowledge is critical if we are to develop new molecular markers for chemoprevention trials.


Subject(s)
Alleles , Mammary Neoplasms, Experimental/genetics , Animals , Disease Models, Animal , Disease Susceptibility , Female , Rats
18.
Cancer Res ; 54(13): 3540-3, 1994 Jul 01.
Article in English | MEDLINE | ID: mdl-8012978

ABSTRACT

Monoterpenes, including limonene and its in vivo rat plasma metabolites, have been shown to be inhibitors of protein isoprenylation of small G proteins, including p21 ras. In addition, dietary limonene has been shown to be capable of preventing the development and causing the regression of chemically induced mammary carcinomas, many of which contain activated ras oncogenes. On the basis of these observations, it was hypothesized that a possible mechanism by which limonene exerts its effects on the chemoprevention and regression of mammary tumors involves the inhibition of protein isoprenylation of the small G protein p21. In the first study, we asked whether dietary limonene was able to prevent the development of mammary carcinomas which were induced using direct retroviral gene transfer of v-Ha-ras into the mammary parenchyma in situ. Limonene modified neither the rate of gene transfer nor the stability of gene expression. However, limonene did greatly inhibit the formation of mammary carcinomas induced by the insertion of activated ras. In a follow-up study, we asked whether chemoprevention by limonene was preferentially effective against a subset of chemically induced mammary carcinomas with activated ras. Rats were fed limonene to prevent the development of N-nitroso-N-methylurea-induced mammary tumors, a majority of which contain the activated Ha-ras oncogene. As expected, limonene administration increased the latency period and lowered the frequency of mammary carcinoma development as compared to controls. However, tumor characterization revealed that limonene treatment did not alter the percentage of carcinomas with activated ras. These studies are consistent with the above studies in that limonene is effective in preventing mammary carcinomas with activated ras. Interestingly, carcinomas without activated ras were prevented to the same extent as those with the activated oncogene.


Subject(s)
Genes, ras , Mammary Neoplasms, Experimental/prevention & control , Terpenes/pharmacology , Animals , Cyclohexenes , Drug Screening Assays, Antitumor , Female , Limonene , Mammary Neoplasms, Experimental/chemically induced , Mammary Neoplasms, Experimental/enzymology , Mammary Neoplasms, Experimental/genetics , Methylnitrosourea , Random Allocation , Rats , Rats, Wistar , Transfection , beta-Galactosidase/analysis , beta-Galactosidase/genetics
19.
Cancer Chemother Pharmacol ; 35(1): 31-7, 1994.
Article in English | MEDLINE | ID: mdl-7987974

ABSTRACT

d-Limonene has efficacy in preclinical models of breast cancer, causing > 80% of carcinomas to regress with little host toxicity. We performed a pilot study on healthy human volunteers to identify plasma metabolites of limonene and to assess the toxicity of supradietary quantities of d-limonene. Seven subjects ingested 100 mg/kg limonene in a custard. Blood was drawn at 0 and 24 h for chemistry-panel analysis and at 0, 4, and 24 h for limonene-metabolite analysis. On-line capillary gas chromatography/mass spectrometry (GC/MS) analysis indicated that at least five compounds were present at 4 h that were not present at time zero. Two major peaks were identified as the rat limonene metabolites dihydroperillic acid and perillic acid, and two minor peaks were found to be the respective methyl esters of these acids. A third major peak was identified as limonene-1,2-diol. Limonene was a minor component. At a dose of 100 mg/kg, limonene caused no gradable toxicity. Limonene is metabolized by humans and rats in a similar manner. These observations and the high therapeutic ratio of limonene in the chemotherapy of rodent cancers suggest that limonene may be an efficacious chemotherapeutic agent for human malignancies.


Subject(s)
Antineoplastic Agents, Phytogenic/pharmacokinetics , Terpenes/pharmacokinetics , Adult , Antineoplastic Agents, Phytogenic/administration & dosage , Antineoplastic Agents, Phytogenic/blood , Cyclohexenes , Female , Gas Chromatography-Mass Spectrometry , Humans , Limonene , Male , Middle Aged , Pilot Projects , Reference Values , Terpenes/administration & dosage , Terpenes/blood
20.
Cancer Chemother Pharmacol ; 34(6): 477-83, 1994.
Article in English | MEDLINE | ID: mdl-7923558

ABSTRACT

The monoterpene perillyl alcohol has been shown to induce the regression of 81% of small mammary carcinomas and up to 75% of advanced mammary carcinomas initiated by 7,12-dimethylbenz(a)anthracene (DMBA) in the Wistar-Furth rat. Dietary perillyl alcohol was greater than 5 times more potent than the monoterpene limonene at inducing tumor regression. Perillyl alcohol is rapidly metabolized in the rat, as is limonene. Rats chronically fed perillyl alcohol had the same circulating plasma metabolites as rats fed limonene; however, the levels of these metabolites found in the plasma were higher for perillyl alcohol-fed rats. For example, rats given a 2% perillyl alcohol diet for 10 weeks had plasma levels of terpene metabolites of 0.82 mM whereas those fed a 10% limonene diet for the same period had blood levels of 0.27 mM. It thus appears that the increased potency of perillyl alcohol over limonene in causing tumor regression may be due at least in part to differences in the pharmacokinetics of these two monoterpenes. We feel that perillyl alcohol is a good candidate for clinical testing of anticancer efficacy in humans.


Subject(s)
Antineoplastic Agents/pharmacology , Mammary Neoplasms, Experimental/drug therapy , Monoterpenes , Terpenes/pharmacology , 9,10-Dimethyl-1,2-benzanthracene , Animals , Body Weight/drug effects , Cyclohexenes , Dose-Response Relationship, Drug , Eating , Female , Limonene , Mammary Neoplasms, Experimental/chemically induced , Mammary Neoplasms, Experimental/pathology , Rats , Rats, Wistar , Time Factors
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