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1.
J Environ Manage ; 347: 119145, 2023 Dec 01.
Article in English | MEDLINE | ID: mdl-37806270

ABSTRACT

This research evaluates a novel decision support system (DSS) for planning brownfield redevelopment. The DSS is implemented within a web-based geographical information system that contains the spatial data informing three modules comprising land use suitability, economic viability, and ground risk. Using multi-criteria decision analysis, an evaluation was conducted on 31,942 ha of post-industrial land and around Liverpool, UK. The representativeness and credibility of the DSS outputs were evaluated through user trials with fifteen land-use planning and development stakeholders from the Liverpool City Region Comined Authority. The DSS was used to explore land use planning scenarios and it could be used to support decision making. Our research reveals that the DSS has the potential to positively inform the identification of brownfield redevelopment opportunities by offering a reliable, carefully curated, and user-driven digital evidence base. This expedites the traditionally manual process of conducting assessments of land suitability and viability. This research has important implications for assessing the impact of current and future planning policy and the potential for the use of digital tools for land use planning and sustainability in the UK and globally.


Subject(s)
Geographic Information Systems , Industry , Power, Psychological
2.
J Environ Manage ; 325(Pt A): 116393, 2023 Jan 01.
Article in English | MEDLINE | ID: mdl-36270126

ABSTRACT

Brownfield redevelopment is a complex process often involving a wide range of stakeholders holding differing priorities and opinions. The use of digital systems and products for decision making, modelling, and supporting discussion has been recognised throughout literature and industry. The inclusion of stakeholder preferences is an important consideration in the design and development of impactful digital tools and decision support systems. In this study, we present findings from stakeholder consultation with professionals from the UK brownfield sector with the aim of informing the design of future digital tools and systems. Our research investigates two broad themes; digitalisation and the use of digital tools across the sector; and perceptions of key brownfield challenge areas where digital tools could help better inform decision-makers. The methodology employed for this study comprises the collection of data and information using a combination of interviews and an online questionnaire. The results from these methods were evaluated both qualitatively and quantitatively. Findings reveal a disparity in levels of digital capability between stakeholder groups including between technical stakeholder types, and that cross-discipline communication of important issues may be aided by the development of carefully designed digital tools. To this end, we present seven core principles to guide the design and implementation of future digital tools for the brownfield sector. These principles are that future digital tools should be: (1) Stakeholder driven, (2) Problem centred, (3) Visual, (4) Intuitive, (5) Interactive, (6) Interoperable, and (7) Geospatial data driven.


Subject(s)
Communication , Industry
3.
Nucleic Acids Res ; 50(16): 9505-9520, 2022 09 09.
Article in English | MEDLINE | ID: mdl-35993814

ABSTRACT

The Smc5/6 complex plays an essential role in the resolution of recombination intermediates formed during mitosis or meiosis, or as a result of the cellular response to replication stress. It also functions as a restriction factor preventing viral replication. Here, we report the cryogenic EM (cryo-EM) structure of the six-subunit budding yeast Smc5/6 holo-complex, reconstituted from recombinant proteins expressed in insect cells - providing both an architectural overview of the entire complex and an understanding of how the Nse1/3/4 subcomplex binds to the hetero-dimeric SMC protein core. In addition, we demonstrate that a region within the head domain of Smc5, equivalent to the 'W-loop' of Smc4 or 'F-loop' of Smc1, mediates an important interaction with Nse1. Notably, mutations that alter the surface-charge profile of the region of Nse1 which accepts the Smc5-loop, lead to a slow-growth phenotype and a global reduction in the chromatin-associated fraction of the Smc5/6 complex, as judged by single molecule localisation microscopy experiments in live yeast. Moreover, when taken together, our data indicates functional equivalence between the structurally unrelated KITE and HAWK accessory subunits associated with SMC complexes.


Subject(s)
Cell Cycle Proteins , Saccharomyces cerevisiae Proteins , Cell Cycle Proteins/metabolism , Nuclear Proteins/metabolism , Cryoelectron Microscopy , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Chromosomal Proteins, Non-Histone/genetics , Chromosomal Proteins, Non-Histone/metabolism
4.
Bot Stud ; 62(1): 20, 2021 Dec 02.
Article in English | MEDLINE | ID: mdl-34855017

ABSTRACT

BACKGROUND: Phosphorus (P) is the limiting nutrient in many mature tropical forests. The ecological significance of declining P stocks as soils age is exacerbated by much of the remaining P being progressively sequestered. However, the details of how and where P is sequestered during the ageing in tropical forest soils remains unclear. RESULTS: We examined the relationships between various forms of the Fe and Al sesquioxides and the Hedley fractions of P in soils of an incipient ferralitic chronosequence on an altitudinal series of gently sloping benches on Green Island, off the southeastern coast of Taiwan. These soils contain limited amounts of easily exchangeable P. Of the sesquioxide variables, only Fe and Al crystallinities increased significantly with bench altitude/soil age, indicating that the ferralisation trend is weak. The bulk of the soil P was in the NaOH and residual extractable fractions, and of low lability. The P fractions that correlated best with the sesquioxides were the organic components of the NaHCO3 and NaOH extracts. CONCLUSIONS: The amorphous sesquioxides, Feo and Alo, were the forms that correlated best with the P fractions. A substantial proportion of the labile P appears to be organic and to be associated with Alo in organic-aluminium complexes. The progression of P sequestration appears to be slightly slower than the chemical and mineralogical indicators of ferralisation.

5.
Sci Total Environ ; 785: 147132, 2021 Sep 01.
Article in English | MEDLINE | ID: mdl-33957586

ABSTRACT

Over the past two decades, many decision support systems (DSSs) have been developed to support decision makers and facilitate the planning and redevelopment process of brownfields. Existing systems are however often siloed in their approach and do not fully capture the complexity of brownfield sites from a sustainable development point of view. This critical review provides an insight into the development and implementation of DSSs, published and emerging, together with assessment of their strengths, limitations and opportunities for future integration. Brownfields DSS applications include: remediation technology selection; and land use planning; and risk assessment. The results of this review lead the authors to identify four opportunities to improve brownfield DSSs: (i) increased use of qualitative socioeconomic criteria, particularly costs and economic variables, (ii) decision-support during the early stages of brownfield redevelopment, (iii) the integration of predictive modelling methods, and (iv) improvements of user interfaces and modern web-based functionalities.

6.
Nucleic Acids Res ; 49(8): 4534-4549, 2021 05 07.
Article in English | MEDLINE | ID: mdl-33849072

ABSTRACT

The multi-component Smc5/6 complex plays a critical role in the resolution of recombination intermediates formed during mitosis and meiosis, and in the cellular response to replication stress. Using recombinant proteins, we have reconstituted a series of defined Saccharomyces cerevisiae Smc5/6 complexes, visualised them by negative stain electron microscopy, and tested their ability to function as an ATPase. We find that only the six protein 'holo-complex' is capable of turning over ATP and that its activity is significantly increased by the addition of double-stranded DNA to reaction mixes. Furthermore, stimulation is wholly dependent on functional ATP-binding pockets in both Smc5 and Smc6. Importantly, we demonstrate that budding yeast Nse5/6 acts as a negative regulator of Smc5/6 ATPase activity, binding to the head-end of the complex to suppress turnover, irrespective of the DNA-bound status of the complex.


Subject(s)
Adenosine Triphosphatases/metabolism , Cell Cycle Proteins/metabolism , Chromosomal Proteins, Non-Histone/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Adenosine Triphosphatases/chemistry , Adenosine Triphosphatases/genetics , Cell Cycle Proteins/chemistry , Cell Cycle Proteins/genetics , Cell Cycle Proteins/ultrastructure , Chromosomal Proteins, Non-Histone/chemistry , Chromosomal Proteins, Non-Histone/genetics , Chromosomal Proteins, Non-Histone/ultrastructure , DNA/metabolism , Escherichia coli/metabolism , Microscopy, Electron, Transmission , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/ultrastructure
7.
Sci Rep ; 9(1): 16424, 2019 11 11.
Article in English | MEDLINE | ID: mdl-31712568

ABSTRACT

Soil testing is frequently conducted to specify nutrient supply recommendations. By adjusting fertilizer type and application rates, farmers can achieve desired crop yields with lower production costs and are thereby less likely to contribute to eutrophication of nearby waterbodies. However, traditional methods of soil testing can be costly, time-consuming and are often impractical in rural and resource-poor regions in China, where rapid population growth and consequent food demand must be balanced against potential environment risks. Smartphones are nearly ubiquitous and offer a ready capability for providing additional support for existing extension advice. In this study, we used an Android-based smartphone application, in conjunction with commercially-available Quantofix test strips, to analyze soil samples with a goal of providing specific fertilizer recommendations. The app transforms the smartphone into a portable reflectometer, relating the reaction color of the test strips to the concentration of soil nutrients available. A 6-month long field study involving two growing seasons of vegetables was conducted in a suburban area of Nanjing, Jiangsu Province of China to evaluate the accuracy and precision of smartphone-mediated soil analysis. Results obtained via the smartphone correlated well with the yield response of the common green vegetable Ipomoea aquatica (water spinach) and could be applied in calculations of necessary off-farm inputs throughout the open-field vegetable growing season. Together, the smartphone and test strip in combination were shown to offer an acceptable screening tool for soil nutrient concentration assessment with the potential to result in substantial monetary savings and reduction of nutrient loss to the environment.

8.
Water Res ; 164: 114926, 2019 Nov 01.
Article in English | MEDLINE | ID: mdl-31387055

ABSTRACT

To reduce leakage and improve service levels, water companies are increasingly using statistical models of pipe failure using infrastructure, weather and environmental data. However, these models are often built by environmental data scientists with limited in-field experience of either fixing pipes or recording data about network failures. As infrastructure data can be inconsistent, incomplete and incorrect, this disconnect between model builders and field operatives can lead to logical errors in how datasets are interpreted and used to create predictive models. An improved understanding of pipe failure can facilitate improved selection of model inputs and the modelling approach. To enable data scientists to build more accurate predictive models of pipe failure, this paper summarises typical factors influencing failure for 5 common groups of materials for water pipes: 1) cast and spun iron, 2) ductile iron, 3) steel, 4) asbestos cement, 5) polyvinyl chloride (PVC) and 6) polyethylene (PE) pipes. With an improved understanding of why and how pipes fail, data scientists can avoid misunderstanding and misusing infrastructure and environmental data, and build more accurate models of infrastructure failure.


Subject(s)
Drinking Water , Construction Materials , Iron , Polyvinyl Chloride , Water Supply
9.
Sci Total Environ ; 661: 598-612, 2019 Apr 15.
Article in English | MEDLINE | ID: mdl-30682611

ABSTRACT

Insurance plays a crucial role in human efforts to adapt to environmental hazards. Effective insurance can serve as both a measure to distribute, and a method to communicate risk. In order for insurance to fulfil these roles successfully, policy pricing and cover choices must be risk-based and founded on accurate information. This is reliant on a robust evidence base forming the foundation of policy choices. This paper focuses on the evidence available to insurers and emergent innovation in the use of data. The main risk considered is coastal flooding, for which the insurance sector offers an option for potential adaptation, capable of increasing resilience. However, inadequate supply and analysis of data have been highlighted as factors preventing insurance from fulfilling this role. Research was undertaken to evaluate how data are currently, and could potentially, be used within risk evaluations for the insurance industry. This comprised of 50 interviews with those working and associated with the London insurance market. The research reveals new opportunities, which could facilitate improvements in risk-reflective pricing of policies. These relate to a new generation of data collection techniques and analytics, such as those associated with satellite-derived data, IoT (Internet of Things) sensors, cloud computing, and Big Data solutions. Such technologies present opportunities to reduce moral hazard through basing predictions and pricing of risk on large empirical datasets. The value of insurers' claims data is also revealed, and is shown to have the potential to refine, calibrate, and validate models and methods. The adoption of such data-driven techniques could enable insurers to re-evaluate risk ratings, and in some instances, extend coverage to locations and developments, previously rated as too high a risk to insure. Conversely, other areas may be revealed more vulnerable, which could generate negative impacts for residents in these regions, such as increased premiums. However, the enhanced risk awareness generated, by new technology, data and data analytics, could positively alter future planning, development and investment decisions.

10.
Cell Rep ; 21(5): 1386-1398, 2017 Oct 31.
Article in English | MEDLINE | ID: mdl-29091774

ABSTRACT

Selective recruitment of protein kinases to the Hsp90 system is mediated by the adaptor co-chaperone Cdc37. We show that assembly of CDK4 and CDK6 into protein complexes is differentially regulated by the Cdc37-Hsp90 system. Like other Hsp90 kinase clients, binding of CDK4/6 to Cdc37 is blocked by ATP-competitive inhibitors. Cdc37-Hsp90 relinquishes CDK6 to D3- and virus-type cyclins and to INK family CDK inhibitors, whereas CDK4 is relinquished to INKs but less readily to cyclins. p21CIP1 and p27KIP1 CDK inhibitors are less potent than the INKs at displacing CDK4 and CDK6 from Cdc37. However, they cooperate with the D-type cyclins to generate CDK4/6-containing ternary complexes that are resistant to cyclin D displacement by Cdc37, suggesting a molecular mechanism to explain the assembly factor activity ascribed to CIP/KIP family members. Overall, our data reveal multiple mechanisms whereby the Hsp90 system may control formation of CDK4- and CDK6-cyclin complexes under different cellular conditions.


Subject(s)
Cell Cycle Proteins/metabolism , Chaperonins/metabolism , Cyclin-Dependent Kinase 4/metabolism , Cyclin-Dependent Kinase 6/metabolism , HSP90 Heat-Shock Proteins/metabolism , Adenosine Triphosphate/chemistry , Adenosine Triphosphate/metabolism , Aminopyridines/chemistry , Aminopyridines/metabolism , Benzimidazoles/metabolism , Cell Cycle Proteins/antagonists & inhibitors , Cell Cycle Proteins/genetics , Chaperonins/antagonists & inhibitors , Chaperonins/genetics , Cyclin D/metabolism , Cyclin-Dependent Kinase 4/antagonists & inhibitors , Cyclin-Dependent Kinase 6/antagonists & inhibitors , Cyclin-Dependent Kinase Inhibitor p16/metabolism , Cyclin-Dependent Kinase Inhibitor p27/metabolism , Fluorescence Resonance Energy Transfer , HSP90 Heat-Shock Proteins/genetics , Humans , Inhibitory Concentration 50 , Kinetics , Piperazines/chemistry , Piperazines/metabolism , Protein Binding , Purines/chemistry , Purines/metabolism , Pyridines/chemistry , Pyridines/metabolism , Surface Plasmon Resonance
11.
Philos Trans A Math Phys Eng Sci ; 374(2071): 20150277, 2016 Jul 13.
Article in English | MEDLINE | ID: mdl-27242299

ABSTRACT

The paper concerns the mechanical performance of continuous fibre/thermosetting polymer matrix composites reinforced in the through-thickness direction with fibrous or metallic rods or threads in order to mitigate against low delamination resistance. Specific illustrations of the effects of microfasteners in reducing delamination crack growth are made for Z-pinned and tufted composites. Response to loading in such 'structured materials' is subject to multiple parameters defining their in-plane and out-of-plane properties. Single microfastener mechanical tests are well suited to establish the crack bridging laws under a range of loading modes, from simple delamination crack opening to shear, and provide the basis for predicting the corresponding response of microfastener arrays, within a given material environment. The fundamental experiments on microfasteners can be used to derive analytical expressions to describe the crack bridging behaviour in a general sense, to cover all possible loadings. These expressions can be built into cohesive element constitutive laws in a finite-element framework for modelling the effects of microfastener arrays on the out-of-plane mechanical response of reinforced structural elements, including the effects of known manufacturing imperfections. Such predictive behaviour can then be used to assess structural integrity under complex loading, as part of the component design process. This article is part of the themed issue 'Multiscale modelling of the structural integrity of composite materials'.

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