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1.
J Mol Graph Model ; 130: 108765, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38615471

ABSTRACT

H2S is a highly toxic, flammable gas that poses risks to health, the environment, and industrial infrastructure. Zeolites, with their high porosity, offer a promising solution for its removal. This study employs density functional theory (DFT) to investigate the adsorption behavior of H2S within the Li-ABW zeolite framework, focusing on the synergistic effect of co-adsorbed water molecules. Six distinct systems were modeled: empty Li-ABW zeolite, half and full filled Li-ABW with H2O or H2S molecules, and equally filled zeolite with H2S and H2O molecules. Detailed analysis of geometric, energetic, and electronic properties reveals that the presence of water significantly enhances H2S adsorption in Li-ABW. Increased bond lengths between H2S and the zeolite framework suggest possible dissociative adsorption, while weakened H2S-zeolite interaction compared to H2O-zeolite interaction indicates facile H2S desorption. Furthermore, charge transfer analysis and HOMO/LUMO plots highlight stronger interactions and a more balanced electron distribution in the co-adsorbed system. Interestingly, the presence of water minimizes structural deformations of the zeolite framework while facilitating the formation of additional hydrogen bonds, potentially further promoting H2S desorption through water extraction. These findings demonstrate that Li-ABW zeolite, particularly in conjunction with water molecules, exhibits remarkable potential for efficient and selective H2S adsorption, offering promising avenues for practical applications in gas sweetening and industrial gas purification. In order to realize this potential, further investigation into the effects of solvents and cation exchange is necessary, which are outlined for future research.


Subject(s)
Density Functional Theory , Hydrogen Sulfide , Water , Zeolites , Zeolites/chemistry , Adsorption , Hydrogen Sulfide/chemistry , Water/chemistry , Hydrogen Bonding , Models, Molecular , Lithium/chemistry , Porosity
2.
J Chem Phys ; 158(18)2023 May 14.
Article in English | MEDLINE | ID: mdl-37158329

ABSTRACT

Standard density functional theory (DFT) approximations tend to strongly underestimate band gaps, while the more accurate GW and hybrid functionals are much more computationally demanding and unsuitable for high-throughput screening. In this work, we have performed an extensive benchmark of several approximations with different computational complexity [G0W0@PBEsol, HSE06, PBEsol, modified Becke-Johnson potential (mBJ), DFT-1/2, and ACBN0] to evaluate and compare their performance in predicting the bandgap of semiconductors. The benchmark is based on 114 binary semiconductors of different compositions and crystal structures, for about half of which experimental band gaps are known. Surprisingly, we find that, compared with G0W0@PBEsol, which exhibits a noticeable underestimation of the band gaps by about 14%, the much computationally cheaper pseudohybrid ACBN0 functional shows a competitive performance in reproducing the experimental data. The mBJ functional also performs well relative to the experiment, even slightly better than G0W0@PBEsol in terms of mean absolute (percentage) error. The HSE06 and DFT-1/2 schemes perform overall worse than ACBN0 and mBJ schemes but much better than PBEsol. Comparing the calculated band gaps on the whole dataset (including the samples with no experimental bandgap), we find that HSE06 and mBJ have excellent agreement with respect to the reference G0W0@PBEsol band gaps. The linear and monotonic correlations between the selected theoretical schemes and experiment are analyzed in terms of the Pearson and Kendall rank coefficients. Our findings strongly suggest the ACBN0 and mBJ methods as very efficient replacements for the costly G0W0 scheme in high-throughput screening of the semiconductor band gaps.

3.
J Chem Phys ; 157(5): 054706, 2022 Aug 07.
Article in English | MEDLINE | ID: mdl-35933199

ABSTRACT

Fluorination of graphene sheets with xenon difluoride leads to the formation of the widest bandgap Gr derivative, namely, fluorographene. Accurate experimental observations distinguish two stages of mechanism in the fluorination procedure: the half-fluorination stage, wherein one side of the Gr sheet is rapidly fluorinated, and the full-fluorination stage, involving much slower fluorination of the opposite side of the sheet [R. J. Kashtiban et al., Nat. Commun. 5, 5902 (2014)]. Here, we perform comprehensive density functional calculations to illustrate accurate microscopic insights into the much slower rate of the full-fluorination stage compared with the half-fluorination one. The calculated minimum energy paths for the half- and full-fluorination processes demonstrate much enhanced fluorine adsorption after the half-fluorination stage, which sounds inconsistent with the experimental picture. This ambiguity is explained in terms of significant chemical activation of the graphene sheet after half-fluorination, which remarkably facilitates the formation of chemical contaminants in the system and, thus, substantially slows down the full-fluorination procedure. After considering the binding energy and durability of the relevant chemical species, including hydrogen, oxygen, and nitrogen molecules and xenon atom, it is argued that oxygen-fluorine ligands are the most likely chemical contaminants opposing the complete fluorination of a graphene sheet. Then, we propose an oxygen desorption mechanism to carefully explain the much enhanced rate of the full-fluorination procedure at elevated temperatures. The potential photocatalytic application of the pristine and defected samples in water splitting and carbon dioxide reduction reactions is also discussed.

4.
Nanoscale ; 14(31): 11270-11283, 2022 Aug 11.
Article in English | MEDLINE | ID: mdl-35880622

ABSTRACT

Topological semimetal phases in two-dimensional (2D) materials have gained widespread interest due to their potential applications in novel nanoscale devices. Despite the growing number of studies on 2D topological nodal lines (NLs), candidates with significant topological features that combine nontrivial topological semimetal phase with superconductivity are still rare. Herein, we predict Al2B2 and AlB4 monolayers as new 2D nonmagnetic Dirac nodal line semimetals with several novel features. Our extensive electronic structure calculations combined with analytical studies reveal that, in addition to multiple Dirac points, these 2D configurations host various highly dispersed NLs around the Fermi level, all of which are semimetal states protected by time-reversal and in-plane mirror symmetries. The most intriguing NL in Al2B2 encloses the K point and crosses the Fermi level, showing a considerable dispersion and thus providing a fresh playground to explore exotic properties in dispersive Dirac nodal lines. More strikingly, for the AlB4 monolayer, we provide the first evidence for a set of 2D nonmagnetic open type-II NLs coexisting with superconductivity at a rather high transition temperature. The coexistence of superconductivity and nontrivial band topology in AlB4 not only makes it a promising material to exhibit novel topological superconducting phases, but also a rather large energy dispersion of type-II nodal lines in this configuration may offer a platform for the realization of novel topological features in the 2D limit.

5.
J Chem Phys ; 147(23): 234306, 2017 Dec 21.
Article in English | MEDLINE | ID: mdl-29272935

ABSTRACT

In the present work, we use a machine learning method to construct a high-dimensional potential for tungsten disulfide using a charge equilibration neural-network technique. A training set of stoichiometric WS2 clusters is prepared in the framework of density functional theory. After training the neural-network potential, the reliability and transferability of the potential are verified by performing a crystal structure search on bulk phases of WS2 and by plotting energy-area curves of two different monolayers. Then, we use the potential to investigate various triangular nano-clusters and nanotubes of WS2. In the case of nano-structures, we argue that 2H atomic configurations with sulfur rich edges are thermodynamically more stable than the other investigated configurations. We also studied a number of WS2 nanotubes which revealed that 1T tubes with armchair chirality exhibit lower bending stiffness.

6.
J Chem Phys ; 145(21): 214303, 2016 Dec 07.
Article in English | MEDLINE | ID: mdl-28799344

ABSTRACT

In this paper, we employ an evolutionary algorithm along with the full-potential density functional theory (DFT) computations to perform a comprehensive search for the stable structures of stoichiometric (WS2)n nano-clusters (n = 1 - 9), within three different exchange-correlation functionals. Our results suggest that n = 5 and 8 are possible candidates for the low temperature magic sizes of WS2 nano-clusters while at temperatures above 500 Kelvin, n = 7 exhibits a comparable relative stability with n = 8. The electronic properties and energy gap of the lowest energy isomers were computed within several schemes, including semilocal Perdew-Burke-Ernzerhof and Becke-Lee-Yang-Parr functionals, hybrid B3LYP functional, many body based DFT+GW approach, ΔSCF method, and time dependent DFT calculations. Vibrational spectra of the lowest lying isomers, computed by the force constant method, are used to address IR spectra and thermal free energy of the clusters. Time dependent density functional calculation in a real time domain is applied to determine the full absorption spectra and optical gap of the lowest energy isomers of the WS2 nano-clusters.

7.
J Chem Phys ; 140(8): 084314, 2014 Feb 28.
Article in English | MEDLINE | ID: mdl-24588176

ABSTRACT

We use static as well as time-dependent first-principles computations to study interaction of the CO, NO, and HCN molecules with the Ag8 nanocluster. The many-body based GW correction is applied for accurate description of the highest occupied (HOMO) and the lowest unoccupied (LUMO) molecular orbital levels. It is argued that the adsorption of these molecules changes the stable structure of Ag8 from Td to the more chemically active D(2d) symmetry. We discuss that the CO, NO, and HCN molecules prefer to adsorb on the atom of the cluster with significant contribution to both HOMO and LUMO, for the accomplishment of the required charge transfers in the systems. The charge back donation is found to leave an excess energy of about 110 meV on the NO molecular bond, evidencing potential application of silver clusters for NO reduction. It is argued that CO and specially NO exhibit strong physical interaction with the silver cluster and hence significantly modify the electronic and optical properties of the system, while HCN makes very week physical bonds with the cluster. The optical absorption spectra of the Ag8 cluster before and after molecule adsorption are computed and a nontrivial red shift is observed in the NO and HCN adsorbed clusters.

8.
J Phys Condens Matter ; 24(50): 505502, 2012 Dec 19.
Article in English | MEDLINE | ID: mdl-23172694

ABSTRACT

Density functional, full-potential computations are performed to study the origin and consequences of the ring to cage structural crossover in (ZnO)(n) (n = 2-16) clusters. The origin of this structural crossover, which is found to occur at n = 10, is studied by investigating the behavior of the Zn-O-Zn bond angle, the Zn-O bond strength, and the number of bonds in the systems. It is argued that 12 is the lowest magic number of ZnO clusters in the ground state, while finite temperature vibrational excitations enhance the relative stability of the (ZnO)(9) cluster to make it a magic system at temperatures above about 170 K. The obtained electronic structure of the clusters before and after applying the many-body GW corrections evidence a size-induced redshift originating from the ring to cage structural crossover in the system. The behavior of the electron density bond points of the clusters along with the extrapolated cluster binding energy at very large sizes may indicate the existence of a metastable structure for large ZnO nanostructures, different from the bulk ZnO structure.

9.
Phys Rev Lett ; 94(9): 096402, 2005 Mar 11.
Article in English | MEDLINE | ID: mdl-15783982

ABSTRACT

We have studied the stability, the electronic, and the magnetic properties of Co2MnSi(001) thin films for 15 different terminations using density functional theory calculations. The phase diagram obtained by ab initio atomistic thermodynamics shows that in practice the MnSi, pure Mn, or pure Si terminated surfaces can be stabilized under suitable conditions. Analyzing the surface band structure, we find that the pure Mn termination, due to its strong surface-subsurface coupling, preserves the half-metallicity of the system, while surface states appear for the other terminations.

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