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1.
Cancer Res ; 81(6): 1472-1485, 2021 03 15.
Article in English | MEDLINE | ID: mdl-33414172

ABSTRACT

Invadopodia are actin-based proteolytic membrane protrusions required for invasive behavior and tumor growth. In this study, we used our high-content screening assay to identify kinases whose activity affects invadopodia formation. Among the top hits selected for further analysis was TAO3, an STE20-like kinase of the GCK subfamily. TAO3 was overexpressed in many human cancers and regulated invadopodia formation in melanoma, breast, and bladder cancers. Furthermore, TAO3 catalytic activity facilitated melanoma growth in three-dimensional matrices and in vivo. A novel, potent catalytic inhibitor of TAO3 was developed that inhibited invadopodia formation and function as well as tumor cell extravasation and growth. Treatment with this inhibitor demonstrated that TAO3 activity is required for endosomal trafficking of TKS5α, an obligate invadopodia scaffold protein. A phosphoproteomics screen for TAO3 substrates revealed the dynein subunit protein LIC2 as a relevant substrate. Knockdown of LIC2 or expression of a phosphomimetic form promoted invadopodia formation. Thus, TAO3 is a new therapeutic target with a distinct mechanism of action. SIGNIFICANCE: An unbiased screening approach identifies TAO3 as a regulator of invadopodia formation and function, supporting clinical development of this class of target.


Subject(s)
Adaptor Proteins, Vesicular Transport/metabolism , Endosomes/metabolism , Neoplasm Invasiveness/pathology , Podosomes/drug effects , Protein Serine-Threonine Kinases/metabolism , Animals , Antineoplastic Agents/pharmacology , Antineoplastic Agents/therapeutic use , Cell Line, Tumor , Cytoplasmic Dyneins/genetics , Cytoplasmic Dyneins/metabolism , Datasets as Topic , Extracellular Matrix , Female , Gene Expression Profiling , Gene Knockdown Techniques , High-Throughput Screening Assays , Humans , Male , Melanoma/drug therapy , Melanoma/pathology , Mice , Neoplasm Invasiveness/prevention & control , Podosomes/pathology , Protein Serine-Threonine Kinases/antagonists & inhibitors , Skin Neoplasms/drug therapy , Skin Neoplasms/pathology , Time-Lapse Imaging , Xenograft Model Antitumor Assays
2.
J Thorac Oncol ; 14(12): 2152-2163, 2019 12.
Article in English | MEDLINE | ID: mdl-31470128

ABSTRACT

INTRODUCTION: Despite the enthusiasm surrounding cancer immunotherapy, most SCLC patients show very modest response to immune checkpoint inhibitor monotherapy treatment. Therefore, there is growing interest in combining immune checkpoint blockade with chemotherapy and other treatments to enhance immune checkpoint blockade efficacy. Based on favorable clinical trial results, chemotherapy and immunotherapy combinations have been recently approved by the U.S. Food and Drug Administration for frontline treatment for SCLC. METHODS AND RESULTS: Here, we show that combined treatment of SRA737, an oral CHK1 inhibitor, and anti-programmed death ligand 1 (PD-L1) leads to an antitumor response in multiple cancer models, including SCLC. We further show that combining low, non-cytotoxic doses of gemcitabine with SRA737 + anti-PD-L1/anti-PD-1 significantly increased antitumorigenic CD8+ cytotoxic T cells, dendritic cells, and M1 macrophage populations in an SCLC model. This regimen also led to a significant decrease in immunosuppressive M2 macrophage and myeloid-derived suppressor cell populations, as well as an increase in the expression of the type I interferon beta 1 gene, IFNß, and chemokines, CCL5 and CXCL10. CONCLUSIONS: Given that anti-PD-L1/anti-PD-1 drugs have recently been approved as monotherapy and in combination with chemotherapy for the treatment of SCLC, and that the SRA737 + low dose gemcitabine regimen is currently in clinical trials for SCLC and other malignancies, our preclinical data provide a strong rational for combining this regimen with inhibitors of the PD-L1/PD-1 pathway.


Subject(s)
Combined Modality Therapy/methods , Deoxycytidine/analogs & derivatives , Heterocyclic Compounds, 4 or More Rings/therapeutic use , Immunotherapy/methods , Lung Neoplasms/drug therapy , Programmed Cell Death 1 Receptor/antagonists & inhibitors , Small Cell Lung Carcinoma/drug therapy , Tumor Microenvironment/immunology , Administration, Oral , Animals , Deoxycytidine/pharmacology , Deoxycytidine/therapeutic use , Female , Heterocyclic Compounds, 4 or More Rings/pharmacology , Humans , Lung Neoplasms/pathology , Mice , Small Cell Lung Carcinoma/pathology , Xenograft Model Antitumor Assays , Gemcitabine
3.
PLoS One ; 11(3): e0152692, 2016.
Article in English | MEDLINE | ID: mdl-27031987

ABSTRACT

Cardiac glycosides (CGs), inhibitors of Na+/K+-ATPase (NKA), used clinically to treat heart failure, have garnered recent attention as potential anti-cancer and anti-viral agents. A high-throughput phenotypic screen designed to identify modulators of promyelocytic leukemia protein (PML) nuclear body (NB) formation revealed the CG gitoxigenin as a potent activator of PML. We demonstrate that multiple structurally distinct CGs activate the formation of PML NBs and induce PML protein SUMOylation in an NKA-dependent fashion. CG effects on PML occur at the post-transcriptional level, mechanistically distinct from previously described PML activators and are mediated through signaling events downstream of NKA. Curiously, genomic deletion of PML in human cancer cells failed to abrogate the cytotoxic effects of CGs and other apoptotic stimuli such as ceramide and arsenic trioxide that were previously shown to function through PML in mice. These findings suggest that alternative pathways can compensate for PML loss to mediate apoptosis in response to CGs and other apoptotic stimuli.


Subject(s)
Cardiac Glycosides/pharmacology , Nuclear Proteins/metabolism , Sumoylation/drug effects , Transcription Factors/metabolism , Tumor Suppressor Proteins/metabolism , Animals , Apoptosis/drug effects , Cardiac Glycosides/chemistry , Chlorocebus aethiops , Gene Deletion , HEK293 Cells , HeLa Cells , Humans , Nuclear Proteins/genetics , Promyelocytic Leukemia Protein , Sodium-Potassium-Exchanging ATPase/antagonists & inhibitors , Sodium-Potassium-Exchanging ATPase/metabolism , Transcription Factors/genetics , Tumor Suppressor Proteins/genetics , Vero Cells
4.
Cancer Res ; 75(24): 5211-8, 2015 Dec 15.
Article in English | MEDLINE | ID: mdl-26603897

ABSTRACT

Disrupting the eukaryotic translation initiation factor 4F (eIF4F) complex offers an appealing strategy to potentiate the effectiveness of existing cancer therapies and to overcome resistance to drugs such as BRAF inhibitors (BRAFi). Here, we identified and characterized the small molecule SBI-0640756 (SBI-756), a first-in-class inhibitor that targets eIF4G1 and disrupts the eIF4F complex. SBI-756 impaired the eIF4F complex assembly independently of mTOR and attenuated growth of BRAF-resistant and BRAF-independent melanomas. SBI-756 also suppressed AKT and NF-κB signaling, but small-molecule derivatives were identified that only marginally affected these pathways while still inhibiting eIF4F complex formation and melanoma growth, illustrating the potential for further structural and functional manipulation of SBI-756 as a drug lead. In the gene expression signature patterns elicited by SBI-756, DNA damage, and cell-cycle regulatory factors were prominent, with mutations in melanoma cells affecting these pathways conferring drug resistance. SBI-756 inhibited the growth of NRAS, BRAF, and NF1-mutant melanomas in vitro and delayed the onset and reduced the incidence of Nras/Ink4a melanomas in vivo. Furthermore, combining SBI-756 and a BRAFi attenuated the formation of BRAFi-resistant human tumors. Taken together, our findings show how SBI-756 abrogates the growth of BRAF-independent and BRAFi-resistant melanomas, offering a preclinical rationale to evaluate its antitumor effects in other cancers.


Subject(s)
Antineoplastic Agents/pharmacology , Cell Proliferation/drug effects , Eukaryotic Initiation Factor-4F/metabolism , Lactams/pharmacology , Melanoma/pathology , Quinolones/pharmacology , Animals , Blotting, Western , Cell Line, Tumor , Disease Models, Animal , Gene Knockout Techniques , Humans , Melanoma/metabolism , Mice
5.
J Biomol Screen ; 20(10): 1232-45, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26265713

ABSTRACT

Endoplasmic reticulum (ER) stress activates three distinct signal transducers on the ER membrane. Inositol-requiring protein 1 (IRE1), the most conserved signal transducer, plays a key role in ER stress-mediated signaling. During ER stress, IRE1 initiates two discrete signaling cascades: the "adaptive" signaling cascade mediated by the XBP1 pathway and the "alarm" signaling cascade mediated by stress-activated protein kinase pathways. Fine-tuning of the balance between the adaptive and alarm signals contributes significantly to cellular fate under ER stress. Thus, we propose that the design of high-throughput screening (HTS) assays to selectively monitor IRE1 mediated-signaling would be desirable for drug discovery. To this end, we report the generation of stable human neural cell lines and development of cell-based HTS luciferase (Luc) reporter gene assays for the identification of pathway-specific chemical modulators of IRE1. We implemented a cell-based Luc assay using a chimeric CHOP-Gal4 transcription factor in 384-well format for monitoring IRE1 kinase-mediated p38MAPK activation and an unfolded response pathway element (URPE)-Luc cell-based assay in 1536-well format for monitoring IRE1's RNase-mediated activation of XBP1. Chemical library screening was successfully conducted with both the CHOP/Gal4-Luc cells and UPRE-Luc engineered cells. The studies demonstrate the feasibility of using these HTS assays for discovery of pathway-selective modulators of IRE1.


Subject(s)
Endoribonucleases/antagonists & inhibitors , High-Throughput Screening Assays , Protein Serine-Threonine Kinases/antagonists & inhibitors , Small Molecule Libraries , Cell Line, Tumor , DNA-Binding Proteins/metabolism , Endoplasmic Reticulum Stress , Endoribonucleases/physiology , Enzyme Activation , Genes, Reporter , HeLa Cells , Humans , Luciferases/analysis , Luciferases/genetics , MAP Kinase Signaling System , Neurons , Protein Serine-Threonine Kinases/physiology , Regulatory Factor X Transcription Factors , Thapsigargin/metabolism , Transcription Factors/metabolism , X-Box Binding Protein 1
6.
J Biomol Screen ; 19(8): 1201-11, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24870016

ABSTRACT

Antiapoptotic Bcl-2 family proteins are validated cancer targets composed of six related proteins. From a drug discovery perspective, these are challenging targets that exert their cellular functions through protein-protein interactions (PPIs). Although several isoform-selective inhibitors have been developed using structure-based design or high-throughput screening (HTS) of synthetic chemical libraries, no large-scale screen of natural product collections has been reported. A competitive displacement fluorescence polarization (FP) screen of nearly 150,000 natural product extracts was conducted against all six antiapoptotic Bcl-2 family proteins using fluorochrome-conjugated peptide ligands that mimic functionally relevant PPIs. The screens were conducted in 1536-well format and displayed satisfactory overall HTS statistics, with Z'-factor values ranging from 0.72 to 0.83 and a hit confirmation rate between 16% and 64%. Confirmed active extracts were orthogonally tested in a luminescent assay for caspase-3/7 activation in tumor cells. Active extracts were resupplied, and effort toward the isolation of pure active components was initiated through iterative bioassay-guided fractionation. Several previously described altertoxins were isolated from a microbial source, and the pure compounds demonstrate activity in both Bcl-2 FP and caspase cellular assays. The studies demonstrate the feasibility of ultra-high-throughput screening using natural product sources and highlight some of the challenges associated with this approach.


Subject(s)
Biological Products/chemistry , High-Throughput Screening Assays/methods , Proto-Oncogene Proteins c-bcl-2/antagonists & inhibitors , Caco-2 Cells , Caspase 3/metabolism , Caspase 7/metabolism , Drug Screening Assays, Antitumor/methods , Fluorescence Polarization/methods , High-Throughput Screening Assays/instrumentation , Humans , Miniaturization , Molecular Targeted Therapy/methods , Mycotoxins/isolation & purification , Mycotoxins/pharmacology , Solid Phase Extraction , bcl-X Protein/antagonists & inhibitors
7.
J Biol Chem ; 289(11): 7825-34, 2014 Mar 14.
Article in English | MEDLINE | ID: mdl-24500713

ABSTRACT

ARTEMIS is a member of the metallo-ß-lactamase protein family. ARTEMIS has endonuclease activity at DNA hairpins and at 5'- and 3'-DNA overhangs of duplex DNA, and this endonucleolytic activity is dependent upon DNA-PKcs. There has been uncertainty about whether ARTEMIS also has 5'-exonuclease activity on single-stranded DNA and 5'-overhangs, because this 5'-exonuclease is not dependent upon DNA-PKcs. Here, we show that the 5'-exonuclease and the endonuclease activities co-purify. Second, we show that a point mutant of ARTEMIS at a putative active site residue (H115A) markedly reduces both the endonuclease activity and the 5'-exonuclease activity. Third, divalent cation effects on the 5'-exonuclease and the endonuclease parallel one another. Fourth, both the endonuclease activity and 5'-exonuclease activity of ARTEMIS can be blocked in parallel by small molecule inhibitors, which do not block unrelated nucleases. We conclude that the 5'-exonuclease is intrinsic to ARTEMIS, making it relevant to the role of ARTEMIS in nonhomologous DNA end joining.


Subject(s)
DNA/chemistry , Deoxyribonuclease I/metabolism , Exodeoxyribonucleases/metabolism , Nuclear Proteins/metabolism , Nucleotidases/chemistry , Chromatography , Circular Dichroism , DNA End-Joining Repair , DNA-Binding Proteins , Endonucleases , HEK293 Cells , Humans , Mutagenesis , Nuclear Proteins/genetics , Oligonucleotides/chemistry , Point Mutation , Transfection
8.
Clin Cancer Res ; 19(10): 2710-22, 2013 May 15.
Article in English | MEDLINE | ID: mdl-23589174

ABSTRACT

PURPOSE: Effective therapy for malignant melanoma, the leading cause of death from skin cancer, remains an area of significant unmet need in oncology. The elevated expression of PKCε in advanced metastatic melanoma results in the increased phosphorylation of the transcription factor ATF2 on threonine 52, which causes its nuclear localization and confers its oncogenic activities. The nuclear-to-mitochondrial translocation of ATF2 following genotoxic stress promotes apoptosis, a function that is largely lost in melanoma cells, due to its confined nuclear localization. Therefore, promoting the nuclear export of ATF2, which sensitizes melanoma cells to apoptosis, represents a novel therapeutic modality. EXPERIMENTAL DESIGN: We conducted a pilot high-throughput screen of 3,800 compounds to identify small molecules that promote melanoma cell death by inducing the cytoplasmic localization of ATF2. The imaging-based ATF2 translocation assay was conducted using UACC903 melanoma cells that stably express doxycycline-inducible GFP-ATF2. RESULTS: We identified two compounds (SBI-0089410 and SBI-0087702) that promoted the cytoplasmic localization of ATF2, reduced cell viability, inhibited colony formation, cell motility, and anchorage-free growth, and increased mitochondrial membrane permeability. SBI-0089410 inhibited the 12-O-tetradecanoylphorbol-l3-acetate (TPA)-induced membrane translocation of protein kinase C (PKC) isoforms, whereas both compounds decreased ATF2 phosphorylation by PKCε and ATF2 transcriptional activity. Overexpression of either constitutively active PKCε or phosphomimic mutant ATF2(T52E) attenuated the cellular effects of the compounds. CONCLUSION: The imaging-based high-throughput screen provides a proof-of-concept for the identification of small molecules that block the oncogenic addiction to PKCε signaling by promoting ATF2 nuclear export, resulting in mitochondrial membrane leakage and melanoma cell death.


Subject(s)
Activating Transcription Factor 2/metabolism , Antineoplastic Agents/pharmacology , Cell Proliferation/drug effects , Mitochondria/drug effects , Activating Transcription Factor 2/genetics , Animals , Antineoplastic Agents/chemistry , Benzamides/chemistry , Benzamides/pharmacology , Cell Cycle/drug effects , Cell Line, Tumor , Cell Nucleus/drug effects , Cell Nucleus/metabolism , Cell Survival/drug effects , Flow Cytometry , Gene Expression Profiling , Gene Expression Regulation, Neoplastic , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , HEK293 Cells , Humans , Immunoblotting , Melanoma/genetics , Melanoma/metabolism , Melanoma/pathology , Mice , Microscopy, Confocal , Mitochondria/metabolism , Molecular Structure , NIH 3T3 Cells , Naphthalenes/chemistry , Naphthalenes/pharmacology , Oligonucleotide Array Sequence Analysis , Phenethylamines/chemistry , Phenethylamines/pharmacology , Protein Kinase C-epsilon/genetics , Protein Kinase C-epsilon/metabolism , Protein Transport/drug effects , Small Molecule Libraries/chemistry , Sulfonamides/chemistry , Sulfonamides/pharmacology
9.
Bioorg Med Chem Lett ; 22(2): 1237-41, 2012 Jan 15.
Article in English | MEDLINE | ID: mdl-22182498

ABSTRACT

The overproduction of nitric oxide during the biological response to inflammation by the nitric oxide synthase (NOS) enzymes have been implicated in the pathology of many diseases. By removal of the amide core from uHTS-derived quinolone 4, a new series highly potent heteroaromatic-aminomethyl quinolone iNOS inhibitors 8 were identified. SAR studies led to identification of piperazine 22 and pyrimidine 32, both of which reduced plasma nitrates following oral dosing in a mouse lipopolysaccharide challenge assay.


Subject(s)
Enzyme Inhibitors/pharmacology , Nitric Oxide Synthase Type II/antagonists & inhibitors , Quinolones/pharmacology , Crystallography, X-Ray , Dose-Response Relationship, Drug , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Humans , Ligands , Models, Molecular , Molecular Structure , Nitric Oxide Synthase Type II/metabolism , Quinolones/chemical synthesis , Quinolones/chemistry , Stereoisomerism , Structure-Activity Relationship
10.
Bioorg Med Chem Lett ; 21(22): 6888-94, 2011 Nov 15.
Article in English | MEDLINE | ID: mdl-21986586

ABSTRACT

We have identified and synthesized a series of imidazole containing dimerization inhibitors of inducible nitric oxide synthase (iNOS). The necessity of key imidazole and piperonyl functionality was demonstrated and SAR studies led to the identification of compound 35, which showed a dose dependant inhibition in multiple pain models, including tactile allodynia induced by spinal nerve ligation (Chung model).


Subject(s)
Enzyme Inhibitors/chemistry , Enzyme Inhibitors/therapeutic use , Hyperalgesia/drug therapy , Imidazoles/chemistry , Imidazoles/therapeutic use , Nitric Oxide Synthase Type II/antagonists & inhibitors , Pain/drug therapy , Protein Multimerization/drug effects , Animals , Enzyme Inhibitors/pharmacology , Female , Humans , Imidazoles/pharmacology , Nitric Oxide Synthase Type II/metabolism , Rats , Rats, Inbred Lew
11.
J Pharmacol Exp Ther ; 336(2): 468-78, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21036913

ABSTRACT

Nitric oxide (NO) derived from neuronal nitric-oxide synthase (nNOS) and inducible nitric-oxide synthase (iNOS) plays a key role in various pain and inflammatory states. KLYP961 (4-((2-cyclobutyl-1H-imidazo[4,5-b]pyrazin-1-yl)methyl)-7,8-difluoroquinolin-2(1H)-one) inhibits the dimerization, and hence the enzymatic activity of human, primate, and murine iNOS and nNOS (IC(50) values 50-400 nM), with marked selectivity against endothelial nitric-oxide synthase (IC(50) >15,000 nM). It has ideal drug like-properties, including excellent rodent and primate pharmacokinetics coupled with a minimal off-target activity profile. In mice, KLYP961 attenuated endotoxin-evoked increases in plasma nitrates, a surrogate marker of iNOS activity in vivo, in a sustained manner (ED(50) 1 mg/kg p.o.). KLYP961 attenuated pain behaviors in a mouse formalin model (ED(50) 13 mg/kg p.o.), cold allodynia in the chronic constriction injury model (ED(50) 25 mg/kg p.o.), or tactile allodynia in the spinal nerve ligation model (ED(50) 30 mg/kg p.o.) with similar efficacy, but superior potency relative to gabapentin, pregabalin, or duloxetine. Unlike morphine, the antiallodynic activity of KLYP961 did not diminish upon repeated dosing. KLYP961 also attenuated carrageenin-induced edema and inflammatory hyperalgesia and writhing response elicited by phenylbenzoquinone with efficacy and potency similar to those of celecoxib. In contrast to gabapentin, KLYP961 did not impair motor coordination at doses as high as 1000 mg/kg p.o. KLYP961 also attenuated capsaicin-induced thermal allodynia in rhesus primates in a dose-related manner with a minimal effective dose (≤ 10 mg/kg p.o.) and a greater potency than gabapentin. In summary, KLYP961 represents an ideal tool with which to probe the physiological role of NO derived from iNOS and nNOS in human pain and inflammatory states.


Subject(s)
Anti-Inflammatory Agents/pharmacology , Enzyme Inhibitors/pharmacology , Fluoroquinolones/pharmacology , Nitric Oxide Synthase Type II/antagonists & inhibitors , Nitric Oxide Synthase Type I/antagonists & inhibitors , Pyrazines/pharmacology , Analgesics/pharmacology , Animals , Cells, Cultured , Cytochrome P-450 Enzyme Inhibitors , Enzyme Inhibitors/pharmacokinetics , Enzyme Inhibitors/toxicity , Fluoroquinolones/pharmacokinetics , Fluoroquinolones/toxicity , Gastrointestinal Transit/drug effects , Humans , Macaca mulatta , Male , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Motor Activity/drug effects , Protein Multimerization , Pyrazines/pharmacokinetics , Pyrazines/toxicity
12.
J Med Chem ; 53(21): 7739-55, 2010 Nov 11.
Article in English | MEDLINE | ID: mdl-20931971

ABSTRACT

Three isoforms of nitric oxide synthase (NOS), dimeric enzymes that catalyze the formation of nitric oxide (NO) from arginine, have been identified. Inappropriate or excessive NO produced by iNOS and/or nNOS is associated with inflammatory and neuropathic pain. Previously, we described the identification of a series of amide-quinolinone iNOS dimerization inhibitors that although potent, suffered from high clearance and limited exposure in vivo. By conformationally restricting the amide of this progenitor series, we describe the identification of a novel series of benzimidazole-quinolinone dual iNOS/nNOS inhibitors with low clearance and sustained exposure in vivo. Compounds were triaged utilizing an LPS challenge assay coupled with mouse and rhesus pharmacokinetics and led to the identification of 4,7-imidazopyrazine 42 as the lead compound. 42 (KD7332) (J. Med. Chem. 2009, 52, 3047 - 3062) was confirmed as an iNOS dimerization inhibitor and was efficacious in the mouse formalin model of nociception and Chung model of neuropathic pain, without showing tolerance after repeat dosing. Further 42 did not affect motor coordination up to doses of 1000 mg/kg, demonstrating a wide therapeutic margin.


Subject(s)
Analgesics/chemical synthesis , Fluoroquinolones/chemical synthesis , Nitric Oxide Synthase Type II/antagonists & inhibitors , Nitric Oxide Synthase Type I/antagonists & inhibitors , Pain/drug therapy , Pyrazines/chemical synthesis , Administration, Oral , Analgesics/chemistry , Analgesics/pharmacology , Animals , Cell Line , Drug Tolerance , Fluoroquinolones/chemistry , Fluoroquinolones/pharmacology , Humans , In Vitro Techniques , Mice , Microsomes, Liver/metabolism , Pain/etiology , Pain Measurement , Peripheral Nervous System Diseases/drug therapy , Peripheral Nervous System Diseases/etiology , Protein Multimerization , Pyrazines/chemistry , Pyrazines/pharmacology , Rotarod Performance Test , Structure-Activity Relationship
13.
Mol Pharmacol ; 76(1): 153-62, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19364813

ABSTRACT

Nitric-oxide synthases (NOS) generate nitric oxide (NO) through the oxidation of l-arginine. Inappropriate or excessive production of NO by NOS is associated with the pathophysiology of various disease states. Efforts to treat these disorders by developing arginine mimetic, substrate-competitive NOS inhibitors as drugs have met with little success. Small-molecule-mediated inhibition of NOS dimerization represents an intriguing alternative to substrate-competitive inhibition. An ultra-high-throughput cell-based screen of 880,000 small molecules identified a novel quinolinone with inducible NOS (iNOS) inhibitory activity. Exploratory chemistry based on this initial screening hit resulted in the synthesis of KLYP956, which inhibits iNOS at low nanomolar concentrations. The iNOS inhibitory potency of KLYP956 is insensitive to changes in concentrations of the substrate arginine, or the cofactor tetrahydrobiopterin. Mechanistic analysis suggests that KLYP956 binds the oxygenase domain in the vicinity of the active site heme and inhibits iNOS and neuronal NOS (nNOS) by preventing the formation of enzymatically active dimers. Oral administration of KLYP956 [N-(3-chlorophenyl)-N-((8-fluoro-2-oxo-1,2-dihydroquinolin-4-yl)methyl)-4-methylthiazole-5-carboxamide] inhibits iNOS activity in a murine model of endotoxemia and blocks pain behaviors in a formalin model of nociception. KLYP956 thus represents the first nonimidazole-based inhibitor of iNOS and nNOS dimerization and provides a novel pharmaceutical alternative to previously described substrate competitive inhibitors.


Subject(s)
Enzyme Inhibitors/pharmacology , Fluoroquinolones/pharmacology , Nitric Oxide Synthase/antagonists & inhibitors , Thiazoles/pharmacology , Administration, Oral , Animals , Cells, Cultured , Dimerization , Humans , Mice , Nitric Oxide/biosynthesis , Nitric Oxide Synthase/chemistry , Nitric Oxide Synthase Type I/chemistry , Nitric Oxide Synthase Type II/chemistry , Pain/drug therapy , Species Specificity
14.
J Med Chem ; 52(9): 3047-62, 2009 May 14.
Article in English | MEDLINE | ID: mdl-19374401

ABSTRACT

There are three isoforms of dimeric nitric oxide synthases (NOS) that convert arginine to citrulline and nitric oxide. Inducible NOS is implicated in numerous inflammatory diseases and, more recently, in neuropathic pain states. The majority of existing NOS inhibitors are either based on the structure of arginine or are substrate competitive. We describe the identification from an ultra high-throughput screen of a novel series of quinolinone small molecule, nonarginine iNOS dimerization inhibitors. SAR studies on the screening hit, coupled with an in vivo lipopolysaccharide (LPS) challenge assay measuring plasma nitrates and drug levels, rapidly led to the identification of compounds 12 and 42--potent inhibitors of the human and mouse iNOS enzyme that were highly selective over endothelial NOS (eNOS). Following oral dosing, compounds 12 and 42 gave a statistical reduction in pain behaviors in the mouse formalin model, while 12 also statistically reduced neuropathic pain behaviors in the chronic constriction injury (Bennett) model.


Subject(s)
Drug Discovery , Fluoroquinolones/administration & dosage , Fluoroquinolones/pharmacology , Nitric Oxide Synthase Type II/antagonists & inhibitors , Pain/drug therapy , Protein Multimerization/drug effects , Pyrazines/administration & dosage , Pyrazines/pharmacology , Quinolones/administration & dosage , Quinolones/pharmacology , Administration, Oral , Animals , Cell Line , Constriction, Pathologic/chemically induced , Constriction, Pathologic/drug therapy , Disease Models, Animal , Enzyme Inhibitors/administration & dosage , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/therapeutic use , Fluoroquinolones/chemistry , Fluoroquinolones/therapeutic use , Formaldehyde/toxicity , Humans , Inhibitory Concentration 50 , Lipopolysaccharides/toxicity , Mice , Nitric Oxide Synthase Type II/chemistry , Nitric Oxide Synthase Type II/metabolism , Protein Structure, Quaternary , Pyrazines/chemistry , Pyrazines/therapeutic use , Quinolones/chemistry , Quinolones/therapeutic use , Structure-Activity Relationship , Substrate Specificity
15.
Bioorg Med Chem Lett ; 18(23): 6093-6, 2008 Dec 01.
Article in English | MEDLINE | ID: mdl-18954983

ABSTRACT

We report the identification of KD5170, a potent mercaptoketone-based Class I and II-histone deacetylase inhibitor that demonstrates broad spectrum cytotoxic activity against a range of human tumor-derived cell lines. KD5170 exhibits robust and sustained histone H3 hyperacetylation in HCT-116 xenograft tumors following single oral or i.v. dose and inhibition of tumor growth following chronic dosing.


Subject(s)
Antineoplastic Agents/pharmacology , Enzyme Inhibitors/pharmacology , Histone Deacetylase Inhibitors , Prodrugs/pharmacology , Pyridines/pharmacology , Sulfonamides/pharmacology , Animals , Antineoplastic Agents/chemistry , Cell Line, Tumor , Drug Screening Assays, Antitumor , HCT116 Cells , Humans , Inhibitory Concentration 50 , Mice , Mice, Nude , Molecular Structure , Prodrugs/chemistry , Pyridines/chemistry , Structure-Activity Relationship , Sulfonamides/chemistry , Xenograft Model Antitumor Assays
16.
Bioorg Med Chem Lett ; 18(24): 6482-5, 2008 Dec 15.
Article in English | MEDLINE | ID: mdl-18954984

ABSTRACT

In an effort to discover novel non-hydroxamic acid histone deacetylase (HDAC) inhibitors, a novel alpha-mercaptoketone was identified in a high-throughput screen. Lead optimization of the screening hit, led to a number of potent HDAC inhibitors. In particular, alpha-mercaptoketone 19y (KD5150) exhibited nanomolar in vitro activity and inhibition of tumor growth in vivo.


Subject(s)
Drug Screening Assays, Antitumor , Histone Deacetylase Inhibitors , Ketones/chemistry , Antineoplastic Agents/therapeutic use , Chelating Agents/pharmacology , Chemistry, Pharmaceutical , Drug Design , Enzyme Inhibitors/pharmacology , HeLa Cells , Humans , Models, Chemical , Neoplasms/drug therapy , Prodrugs/chemistry , Structure-Activity Relationship , Zinc/chemistry
17.
Mol Cancer Ther ; 7(6): 1494-505, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18566220

ABSTRACT

Histone deacetylase inhibitors have emerged as promising anticancer drugs. Using an unbiased ultrahigh throughput screening system, a novel mercaptoketone-based histone deacetylase inhibitor series was identified that was optimized to the lead compound, KD5170. KD5170 inhibited the proliferation of myeloma cell lines and the viability of CD138(+) primary myeloma cells by induction of apoptosis, accompanied by an increase of acetylation of histones and activation of caspase-3, caspase-8, and caspase-9. Treatment with KD5170 caused a loss of mitochondrial membrane potential resulting in release of apoptogenic factors such as cytochrome c, Smac, and apoptosis-inducing factor. Furthermore, KD5170 induced oxidative stress and oxidative DNA damage in myeloma cells as evidenced by the up-regulation of heme oxygenase-1 and H2A.X phosphorylation. Combination of KD5170 with proteasome inhibitor bortezomib or tumor necrosis factor-related apoptosis-inducing ligand synergistically enhanced the antimyeloma activity. We further found that resistance of myeloma cells to KD5170 was associated with activation of the extracellular signal-regulated kinase/mitogen-activated protein kinase pathway under treatment with KD5170. Pretreatment with the mitogen-activated protein kinase inhibitor U0126 restored sensitivity to KD5170, suggesting that the combination of KD5170 with U0126 could overcome drug resistance. Growth of myeloma tumor xenografts in KD5170-treated nude mice was significantly inhibited and survival was prolonged. Histone acetylation was increased in spleen and tumor tissues of animals treated with KD5170. Our data indicate that KD5170 has potent antimyeloma activity in vitro and in vivo, which is mediated by DNA damage and mitochondrial signaling and subsequent induction of apoptosis.


Subject(s)
DNA Damage , Enzyme Inhibitors/pharmacology , Histone Deacetylase Inhibitors , Ketones/pharmacology , Mitochondria/metabolism , Multiple Myeloma/enzymology , Pyridines/pharmacology , Signal Transduction/drug effects , Sulfonamides/pharmacology , Acetylation/drug effects , Animals , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Apoptosis Regulatory Proteins/metabolism , Boronic Acids/pharmacology , Bortezomib , Caspases/metabolism , Cell Line, Tumor , Drug Resistance, Neoplasm/drug effects , Drug Synergism , Enzyme Activation/drug effects , Enzyme Inhibitors/chemistry , Histones/metabolism , Humans , Ketones/chemistry , Membrane Potential, Mitochondrial/drug effects , Mice , Mitochondria/drug effects , Oxidative Stress/drug effects , Protein Transport/drug effects , Pyrazines/pharmacology , Pyridines/chemistry , Sulfonamides/chemistry , TNF-Related Apoptosis-Inducing Ligand/pharmacology , Xenograft Model Antitumor Assays , bcl-2-Associated X Protein/metabolism
18.
Mol Cancer Ther ; 7(5): 1054-65, 2008 May.
Article in English | MEDLINE | ID: mdl-18483295

ABSTRACT

Histone deacetylase (HDAC) inhibitors have garnered significant attention as cancer drugs. These therapeutic agents have recently been clinically validated with the market approval of vorinostat (SAHA, Zolinza) for treatment of cutaneous T-cell lymphoma. Like vorinostat, most of the small-molecule HDAC inhibitors in clinical development are hydroxamic acids, whose inhibitory activity stems from their ability to coordinate the catalytic Zn2+ in the active site of HDACs. We sought to identify novel, nonhydroxamate-based HDAC inhibitors with potentially distinct pharmaceutical properties via an ultra-high throughput small molecule biochemical screen against the HDAC activity in a HeLa cell nuclear extract. An alpha-mercaptoketone series was identified and chemically optimized. The lead compound, KD5170, exhibits HDAC inhibitory activity with an IC50 of 0.045 micromol/L in the screening biochemical assay and an EC50 of 0.025 micromol/L in HeLa cell-based assays that monitor histone H3 acetylation. KD5170 also exhibits broad spectrum classes I and II HDAC inhibition in assays using purified recombinant human isoforms. KD5170 shows significant antiproliferative activity against a variety of human tumor cell lines, including the NCI-60 panel. Significant tumor growth inhibition was observed after p.o. dosing in human HCT-116 (colorectal cancer), NCI-H460 (non-small cell lung carcinoma), and PC-3 (prostate cancer) s.c. xenografts in nude mice. In addition, a significant increase in antitumor activity and time to end-point occurred when KD5170 was combined with docetaxel in xenografts of the PC-3 prostate cancer cell line. The biological and pharmaceutical profile of KD5170 supports its continued preclinical and clinical development as a broad spectrum anticancer agent.


Subject(s)
Antineoplastic Agents/pharmacology , Enzyme Inhibitors/pharmacology , Histone Deacetylase Inhibitors , Pyridines/pharmacology , Sulfonamides/pharmacology , Animals , Cell Line, Tumor , Colorectal Neoplasms/drug therapy , Drug Screening Assays, Antitumor , Female , Humans , Inhibitory Concentration 50 , Male , Mice , Mice, Inbred BALB C , Mice, Nude , Prostatic Neoplasms/drug therapy , Xenograft Model Antitumor Assays
19.
Curr Chem Genomics ; 2: 1-9, 2008 Sep 27.
Article in English | MEDLINE | ID: mdl-20161838

ABSTRACT

The transcription of inducible nitric oxide synthase (iNOS) is activated by a network of proinflammatory signaling pathways. Here we describe the identification of a small molecule that downregulates the expression of iNOS mRNA and protein in cytokine-activated cells and suppresses nitric oxide production in vivo. Mechanistic analysis suggests that this small molecule, erstressin, also activates the unfolded protein response (UPR), a signaling pathway triggered by endoplasmic reticulum stress. Erstressin induces rapid phosphorylation of eIF2alpha and the alternative splicing of XBP-1, hallmark initiating events of the UPR. Further, erstressin activates the transcription of multiple genes involved in the UPR. These data suggest an inverse relationship between UPR activation and iNOS mRNA and protein expression under proinflammatory conditions.

20.
Genes Dev ; 17(8): 977-90, 2003 Apr 15.
Article in English | MEDLINE | ID: mdl-12672694

ABSTRACT

In Caenorhabditis elegans, an X chromosome-counting mechanism specifies sexual fate. Specific genes termed X-signal elements, which are present on the X chromosome, act in a concerted dose-dependent fashion to regulate levels of the developmental switch gene xol-1. In turn, xol-1 levels determine sexual fate and the activation state of the dosage compensation mechanism. The crystal structure of the XOL-1 protein at 1.55 A resolution unexpectedly reveals that xol-1 encodes a GHMP kinase family member, despite sequence identity of 10% or less. Because GHMP kinases, thus far, have only been characterized as small molecule kinases involved in metabolic pathways, for example, amino acid and cholesterol synthesis, XOL-1 is the first member that controls nonmetabolic processes. Biochemical investigations demonstrated that XOL-1 does not bind ATP under standard conditions, suggesting that XOL-1 acts by a mechanism distinct from that of other GHMP kinases. In addition, we have cloned a XOL-1 ortholog from Caenorhabditis briggsae, a related nematode that diverged from C. elegans approximately 50-100 million years ago. These findings demonstrate an unanticipated role for GHMP kinase family members as mediators of sexual differentiation and dosage compensation and, possibly, other aspects of differentiation and development.


Subject(s)
Caenorhabditis elegans Proteins , Caenorhabditis elegans/genetics , Caenorhabditis/genetics , Dosage Compensation, Genetic , Helminth Proteins/chemistry , Helminth Proteins/physiology , Sex Determination Processes , X Chromosome , Adenosine Triphosphatases/metabolism , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Animals , Caenorhabditis/growth & development , Caenorhabditis/metabolism , Caenorhabditis elegans/growth & development , Cloning, Molecular , Crystallization , Crystallography, X-Ray , Disorders of Sex Development/genetics , Molecular Sequence Data , Phosphotransferases (Alcohol Group Acceptor)/chemistry , Phosphotransferases (Phosphate Group Acceptor)/chemistry , Protein Binding , Protein Conformation , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Signal Transduction , Spectrometry, Fluorescence
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