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1.
DNA Seq ; 13(6): 313-20, 2002 Dec.
Article in English | MEDLINE | ID: mdl-12652902

ABSTRACT

Sequencing of two cDNAs from the anaerobic fungi Piromyces equi and Piromyces sp. strain E2 revealed that they both encode a glycoside hydrolase (GH) family 48 cellulase, containing two C-terminal fungal dockerin domains. N-terminal sequencing of the major component of the Piromyces multi-enzyme cellulase/hemicellulase complex, termed the cellulosome, showed that these 80 kDa proteins corresponded to the GH family 48 enzyme. These data show for the first time that GH family 48 cellulases are not confined to bacteria, and that bacterial and fungal cellulosomes share the same pivotal component.


Subject(s)
Glycoside Hydrolases/genetics , Piromyces/genetics , Catalytic Domain , Glycoside Hydrolases/metabolism , Phylogeny , Piromyces/metabolism , Sequence Analysis, DNA
2.
J Biol Chem ; 276(46): 43010-7, 2001 Nov 16.
Article in English | MEDLINE | ID: mdl-11560933

ABSTRACT

The recycling of photosynthetically fixed carbon by the action of microbial plant cell wall hydrolases is a fundamental biological process that is integral to one of the major geochemical cycles and, in addition, has considerable industrial potential. Enzyme systems that attack the plant cell wall contain noncatalytic carbohydrate-binding modules (CBMs) that mediate attachment to this composite structure and play a pivotal role in maximizing the hydrolytic process. Anaerobic fungi that colonize herbivores are the most efficient plant cell wall degraders known, and this activity is vested in a high molecular weight complex that binds tightly to the plant cell wall. To investigate whether plant cell wall attachment is mediated by noncatalytic proteins, a cDNA library of the anaerobic fungus Piromyces equi was screened for sequences that encode noncatalytic proteins that are components of the cellulase-hemicellulase complex. A 1.6-kilobase cDNA was isolated encoding a protein of 479 amino acids with a M(r) of 52548 designated NCP1. The mature protein had a modular architecture comprising three copies of the noncatalytic dockerin module that targets anaerobic fungal proteins to the cellulase-hemicellulase complex. The two C-terminal modules of NCP1, CBM29-1 and CBM29-2, respectively, exhibit 33% sequence identity with each other but have no homologues in protein data bases. A truncated form of NCP1 comprising CBM29-1 and CBM29-2 (CBM29-1-2) and each of the two individual copies of CBM29 bind primarily to mannan, cellulose, and glucomannan, displaying the highest affinity for the latter polysaccharide. CBM29-1-2 exhibits 4-45-fold higher affinity than either CBM29-1 or CBM29-2 for the various ligands, indicating that the two modules, when covalently linked, act in synergy to bind to an array of different polysaccharides. This paper provides the first report of a CBM-containing protein from an anaerobic fungal cellulase-hemicellulase complex. The two CBMs constitute a novel CBM family designated CBM29 whose members exhibit unusually wide ligand specificity. We propose, therefore, that NCP1 plays a role in sequestering the fungal enzyme complex onto the plant cell wall.


Subject(s)
Carbohydrate Metabolism , Carbohydrates/chemistry , Fungal Proteins/chemistry , Fungal Proteins/physiology , Piromyces/chemistry , Amino Acid Sequence , Amino Acids/chemistry , Animals , Base Sequence , Blotting, Western , Calorimetry , Cattle , Cell Wall , DNA/metabolism , DNA, Complementary/metabolism , Dose-Response Relationship, Drug , Electrophoresis, Polyacrylamide Gel , Escherichia coli/metabolism , Gene Library , Kinetics , Ligands , Mannans/metabolism , Molecular Sequence Data , Piromyces/metabolism , Plants/chemistry , Plasmids/metabolism , Protein Binding , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Serum Albumin/metabolism , Temperature
3.
Nat Struct Biol ; 8(9): 775-8, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11524680

ABSTRACT

The recycling of photosynthetically fixed carbon in plant cell walls is a key microbial process. In anaerobes, the degradation is carried out by a high molecular weight multifunctional complex termed the cellulosome. This consists of a number of independent enzyme components, each of which contains a conserved dockerin domain, which functions to bind the enzyme to a cohesin domain within the protein scaffoldin protein. Here we describe the first three-dimensional structure of a fungal dockerin, the N-terminal dockerin of Cel45A from the anaerobic fungus Piromyces equi. The structure contains a novel fold of 42 residues. The ligand binding site consists of residues Trp 35, Tyr 8 and Asp 23, which are conserved in all fungal dockerins. The binding site is on the opposite side of the N- and C-termini of the molecule, implying that tandem dockerin domains, seen in the majority of anaerobic fungal plant cell wall degrading enzymes, could present multiple simultaneous binding sites and, therefore, permit tailoring of binding to catalytic demands.


Subject(s)
Fungal Proteins/chemistry , Fungal Proteins/metabolism , Fungi/chemistry , Amino Acid Sequence , Binding Sites , Cell Cycle Proteins , Chromosomal Proteins, Non-Histone , Conserved Sequence , EF Hand Motifs , Fungal Proteins/genetics , Fungi/genetics , Ligands , Models, Molecular , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Nuclear Proteins/chemistry , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Protein Binding , Protein Structure, Tertiary , Sequence Alignment , Thermodynamics , Cohesins
4.
FEMS Microbiol Lett ; 192(2): 197-203, 2000 Nov 15.
Article in English | MEDLINE | ID: mdl-11064195

ABSTRACT

A library of Pseudomonas fluorescens subsp. cellulosa genomic DNA, constructed in lambda ZAPII, was screened for alpha-D-galactosidase activity. The DNA inserts from six galactosidase-positive clones were rescued into plasmids. Restriction digestion and Southern analysis revealed that each of the plasmids contained a common DNA sequence. The sequence of the Pseudomonas DNA in one of the plasmids revealed a single open reading frame (aga27A) of 1215 bp encoding a protein of M(r) 45900, designated alpha-galactosidase 27A (Aga27A). Aga27A exhibited extensive sequence identity with alpha-galactosidases in glycoside hydrolase 27, and appeared to be a single domain protein. The recombinant alpha-galactosidase was expressed at high levels in Escherichia coli and the biophysical properties and substrate specificity of the enzyme were evaluated. The data showed that Aga27A was a mesophilic neutral acting non-specific alpha-galactosidase. Both P. fluorescens subsp. cellulosa mannanase A (ManA) and Aga27A hydrolyse the polymeric substrate, carob galactomannan. Sequential hydrolysis with AgaA followed by ManA, or ManA followed by AgaA enhanced product release. The positive effects of sequential hydrolysis are discussed.


Subject(s)
Bacterial Proteins/genetics , Mannans/metabolism , Pseudomonas fluorescens/enzymology , alpha-Galactosidase/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Escherichia coli/genetics , Galactose/analogs & derivatives , Gene Expression Regulation, Enzymologic , Molecular Sequence Data , Molecular Weight , Pseudomonas fluorescens/genetics , Sequence Alignment , Substrate Specificity , alpha-Galactosidase/chemistry , alpha-Galactosidase/metabolism
5.
Microbiology (Reading) ; 146 ( Pt 8): 1959-1967, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10931900

ABSTRACT

Hydrolysis of the plant cell wall polysaccharides cellulose and xylan requires the synergistic interaction of a repertoire of extracellular enzymes. Recently, evidence has emerged that anaerobic bacteria can synthesize high levels of periplasmic xylanases which may be involved in the hydrolysis of small xylo-oligosaccharides absorbed by the micro-organism. Cellvibrio mixtus, a saprophytic aerobic soil bacterium that is highly active against plant cell wall polysaccharides, was shown to express internal xylanase activity when cultured on media containing xylan or glucose as sole carbon source. A genomic library of C. mixtus DNA, constructed in lambdaZAPII, was screened for xylanase activity. The nucleotide sequence of the genomic insert from a xylanase-positive clone that expressed intracellular xylanase activity in Escherichia coli revealed an ORF of 1137 bp (xynC), encoding a polypeptide with a deduced M(r) of 43413, defined as xylanase C (XylC). Probing a gene library of Pseudomonas fluorescens subsp. cellulosa with C. mixtus xynC identified a xynC homologue (designated xynG) encoding XylG; XylG and xynG were 67% and 63% identical to the corresponding C. mixtus sequences, respectively. Both XylC and XylG exhibit extensive sequence identity with family 10 xylanases, particularly with non-modular enzymes, and gene deletion studies on xynC supported the suggestion that they are single-domain xylanases. Purified recombinant XylC had an M(r) of 41000, and displayed biochemical properties typical of family 10 polysaccharidases. However, unlike previously characterized xylanases, XylC was particularly sensitive to proteolytic inactivation by pancreatic proteinases and was thermolabile. C. mixtus was grown to late-exponential phase in the presence of glucose or xylan and the cytoplasmic, periplasmic and cell envelope fractions were probed with anti-XylC antibodies. The results showed that XylC was absent from the culture media but was predominantly present in the periplasm of C. mixtus cells grown on glucose, xylan, CM-cellulose or Avicel. These data suggest that C. mixtus can express non-modular internal xylanases whose potential roles in the hydrolysis of plant cell wall components are discussed.


Subject(s)
Cellvibrio/enzymology , Xylosidases/metabolism , Cell Wall/metabolism , Cellulose/metabolism , Cellvibrio/genetics , Endo-1,4-beta Xylanases , Genes, Bacterial , Hydrolysis , Plants/metabolism , Restriction Mapping , Subcellular Fractions/enzymology , Xylan Endo-1,3-beta-Xylosidase , Xylans/metabolism , Xylosidases/genetics
6.
Appl Microbiol Biotechnol ; 53(6): 661-7, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10919323

ABSTRACT

Enzymatic pretreatment of softwood kraft pulp was investigated using xylanase A (XylA) from Neocallimastix patriciarum in combination with mannanase and alpha-galactosidase. Mannanase A (ManA) from Pseudomonas fluorescens subsp. cellulosa and ManA from Clostridium thermocellum, both family 26 glycosyl hydrolases, are structurally diverse and exhibit different pH and temperature optima. Although neither mannanase was effective in pretreating softwood pulp alone, both enzymes were able to enhance the production of reducing sugar and the reduction of single-stage bleached kappa number when used with the xylanase. Sequential incubations with XylA and P. fluorescens ManA produced the largest final kappa number reduction in comparison to control pretreated pulp. The release of galactose from softwood pulp by alpha-galactosidase A (AgaA) from P. fluorescens was enhanced by the presence of ManA from the same microorganism, and a single pretreatment with these enzymes, in combination with XylA. gave the most effective kappa number reduction using a single incubation. Results indicated that mixtures of hemicellulase activities can be chosen to enhance pulp bleachability.


Subject(s)
Glycoside Hydrolases/metabolism , Industry , Paper , Mannosidases/metabolism , Xylan Endo-1,3-beta-Xylosidase , Xylosidases/metabolism , alpha-Galactosidase/metabolism , beta-Mannosidase
7.
Biochem J ; 343 Pt 1: 215-24, 1999 Oct 01.
Article in English | MEDLINE | ID: mdl-10493932

ABSTRACT

A collection of clones, isolated from a Piromyces equi cDNA expression library by immunoscreening with antibodies raised against affinity purified multienzyme fungal cellulase-hemicellulase complex, included one which expressed cinnamoyl ester hydrolase activity. The P. equi cinnamoyl ester hydrolase gene (estA) comprised an open reading frame of 1608 nt encoding a protein (EstA) of 536 amino acids and 55540 Da. EstA was modular in structure and comprised three distinct domains. The N-terminal domain was closely similar to a highly conserved non-catalytic 40-residue docking domain which is prevalent in cellulases and hemicellulases from three species of anaerobic fungi and binds to a putative scaffolding protein during assembly of the fungal cellulase complex. The second domain was also not required for esterase activity and appeared to be an atypically large linker comprising multiple tandem repeats of a 13-residue motif. The C-terminal 270 residues of EstA contained an esterase catalytic domain that exhibited overall homology with a small family of esterases, including acetylxylan esterase D (XYLD) from Pseudomonas fluorescens subsp. cellulosa and acetylxylan esterase from Aspergillus niger. This region also contained several smaller blocks of residues that displayed homology with domains tentatively identified as containing the essential catalytic residues of a larger group of serine hydrolases. A truncated variant of EstA, comprising the catalytic domain alone (EstA'), was expressed in Escherichia coli as a thioredoxin fusion protein and was purified to homogeneity. EstA' was active against synthetic and plant cell-wall-derived substrates, showed a marked preference for cleaving 1-->5 ester linkages between ferulic acid and arabinose in feruloylated arabino-xylo-oligosaccharides and was inhibited by the serine-specific protease inhibitor aminoethylbenzene-sulphonylfluoride. EstA' acted synergistically with xylanase to release more than 60% of the esterified ferulic acid from the arabinoxylan component of plant cell walls. Western analysis confirmed that EstA is produced by P. equi and is a component of the aggregated multienzyme cellulase-hemicellulase complex. Hybrid proteins, harbouring one, two or three iterations of the conserved 40-residue fungal docking domain fused to the reporter protein glutathione S-transferase, were produced. Western blot analysis of immobilized P. equi cellulase-hemicellulase complex demonstrated that each of the hybrid proteins bound to a 97 kDa polypeptide in the extracellular complex.


Subject(s)
Carboxylic Ester Hydrolases/metabolism , Cellulase/metabolism , Cellulose/metabolism , Glycoside Hydrolases/metabolism , Piromyces/enzymology , Xylosidases/metabolism , Amino Acid Sequence , Base Sequence , Carboxylic Ester Hydrolases/chemistry , Carboxylic Ester Hydrolases/genetics , Chromatography, Affinity , Chromatography, Ion Exchange , DNA, Complementary , Electrophoresis, Polyacrylamide Gel , Enzyme Inhibitors/pharmacology , Molecular Sequence Data , Multienzyme Complexes/metabolism , Protein Binding , Sequence Homology, Amino Acid , Sulfones/pharmacology , Xylan Endo-1,3-beta-Xylosidase
8.
Biochem J ; 342 ( Pt 2): 473-80, 1999 Sep 01.
Article in English | MEDLINE | ID: mdl-10455036

ABSTRACT

Xylanase A (Pf Xyn10A), in common with several other Pseudomonas fluorescens subsp. cellulosa polysaccharidases, consists of a Type II cellulose-binding domain (CBD), a catalytic domain (Pf Xyn10A(CD)) and an internal domain that exhibits homology to Type X CBDs. The Type X CBD of Pf Xyn10A, expressed as a discrete entity (CBD(X)) or fused to the catalytic domain (Pf Xyn10A'), bound to amorphous and bacterial microcrystalline cellulose with a K(a) of 2.5 x 10(5) M(-1). CBD(X) exhibited no affinity for soluble forms of cellulose or cello-oligosaccharides, suggesting that the domain interacts with multiple cellulose chains in the insoluble forms of the polysaccharide. Pf Xyn10A' was 2-3 times more active against cellulose-hemicellulose complexes than Pf Xyn10A(CD); however, Pf Xyn10A' and Pf Xyn10A(CD) exhibited the same activity against soluble substrates. CBD(X) did not disrupt the structure of plant-cell-wall material or bacterial microcrystalline cellulose, and did not potentiate Pf Xyn10A(CD) when not covalently linked to the enzyme. There was no substantial difference in the affinity of full-length Pf Xyn10A and the enzyme's Type II CBD for cellulose. The activity of Pf Xyn10A against cellulose-hemicellulose complexes was similar to that of Pf Xyn10A', and a derivative of Pf Xyn10A in which the Type II CBD is linked to the Pf Xyn10A(CD) via a serine-rich linker sequence [Bolam, Cireula, McQueen-Mason, Simpson, Williamson, Rixon, Boraston, Hazlewood and Gilbert (1998) Biochem J. 331, 775-781]. These data indicate that CBD(X) is functional in Pf Xyn10A and that no synergy, either in ligand binding or in the potentiation of catalysis, is evident between the Type II and X CBDs of the xylanase.


Subject(s)
Pseudomonas fluorescens/enzymology , Xylosidases/chemistry , Xylosidases/metabolism , Base Sequence , Binding Sites , Cellulose/metabolism , DNA Primers/genetics , Endo-1,4-beta Xylanases , Escherichia coli/genetics , Kinetics , Magnetic Resonance Spectroscopy , Pseudomonas fluorescens/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Substrate Specificity , Xylans/metabolism , Xylosidases/genetics
9.
Biochem J ; 342 ( Pt 1): 105-10, 1999 Aug 15.
Article in English | MEDLINE | ID: mdl-10432306

ABSTRACT

Clostridium thermocellum produces a consortium of plant-cell-wall hydrolases that form a cell-bound multi-enzyme complex called the cellulosome. In the present study two similar xylanase genes, xynU and xynV, were cloned from C. thermocellum strain YS and sequenced. The deduced primary structures of both xylanases, xylanase U (XylU) and xylanase V (XylV), were homologous with the previously characterized xylanases from C. thermocellum strain F1. Truncated derivatives of XylV were produced and their biochemical properties were characterized. The xylanases were shown to be remarkably thermostable and resistant to proteolytic inactivation. The catalytic domains hydrolysed xylan by a typical endo-mode of action. The type VI cellulose-binding domain (CBD) homologue of XylV bound xylan and, to a smaller extent, Avicel and acid-swollen cellulose. Deletion of the CBD from XylV abolished the capacity of the enzymes to bind polysaccharides. The polysaccharide-binding domain was shown to have a key role in the hydrolysis of insoluble substrates by XylV. The C-terminal domain of XylV, which is absent from XylU, removed acetyl groups from acetylated xylan and acted in synergy with the glycosyl hydrolase catalytic domain of the enzyme to elicit the hydrolysis of acetylated xylan.


Subject(s)
Catalytic Domain , Clostridium/enzymology , Multienzyme Complexes/chemistry , Xylans/metabolism , Xylosidases/metabolism , Acetylation , Amidohydrolases/chemistry , Amidohydrolases/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Binding Sites , Cellulose/analogs & derivatives , Cellulose/metabolism , Cloning, Molecular , Clostridium/genetics , Enzyme Stability , Genes, Bacterial/genetics , Genes, Bacterial/physiology , Hydrogen-Ion Concentration , Hydrolysis , Kinetics , Ligands , Multienzyme Complexes/genetics , Multienzyme Complexes/metabolism , Sequence Deletion , Sequence Homology, Amino Acid , Solubility , Substrate Specificity , Temperature , Xylan Endo-1,3-beta-Xylosidase , Xylosidases/chemistry , Xylosidases/genetics
10.
Structure ; 7(7): 853-64, 1999 Jul 15.
Article in English | MEDLINE | ID: mdl-10425686

ABSTRACT

BACKGROUND: Many enzymes that digest polysaccharides contain separate polysaccharide-binding domains. Structures have been previously determined for a number of cellulose-binding domains (CBDs) from cellulases. RESULTS: The family IIb xylan-binding domain 1 (XBD1) from Cellulomonas fimi xylanase D is shown to bind xylan but not cellulose. Its structure is similar to that of the homologous family IIa CBD from C. fimi Cex, consisting of two four-stranded beta sheets that form a twisted 'beta sandwich'. The xylan-binding site is a groove made from two tryptophan residues that stack against the faces of the sugar rings, plus several hydrogen-bonding polar residues. CONCLUSIONS: The biggest difference between the family IIa and IIb domains is that in the former the solvent-exposed tryptophan sidechains are coplanar, whereas in the latter they are perpendicular, forming a twisted binding site. The binding sites are therefore complementary to the secondary structures of the ligands cellulose and xylan. XBD1 and CexCBD represent a striking example of two proteins that have high sequence similarity but a different function.


Subject(s)
Cellulose/metabolism , Xylans/metabolism , Xylosidases/chemistry , beta-Glucosidase/chemistry , Amino Acid Sequence , Base Sequence , Crystallography, X-Ray , DNA Primers , Endo-1,4-beta Xylanases , Ligands , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Sequence Data , Protein Structure, Secondary , Sequence Homology, Amino Acid , Substrate Specificity , Thermodynamics , Xylosidases/metabolism , beta-Glucosidase/metabolism
11.
J Biotechnol ; 72(1-2): 95-101, 1999 Jun 11.
Article in English | MEDLINE | ID: mdl-10406100

ABSTRACT

The energy which simple-stomached livestock can derive from dietary plant material is limited by the lack of plant polysaccharide degrading enzymes in their gastro-intestinal (GI) tract and the inefficient microbial fermentation of such material in their hind-gut. In poultry the non-starch polysaccharides found in cereal grains can also impair normal digestive function as they form viscous gels in the GI tract inhibiting the breakdown and absorption of nutrients. The nutrition of such livestock could, therefore, be improved by the introduction of enzymes able to degrade plant polysaccharides in the small intestine. We describe the expression of a xylanase, XYLY', from the bacterium Clostridium thermocellum in mammalian cells and the exocrine pancreas of transgenic mice. The enzyme is synthesised, secreted and functionally active in the eukaryote system. This work demonstrates the feasibility of generating animals with the endogenous capacity to depolymerise the xylan component of hemi-cellulose.


Subject(s)
Clostridium/enzymology , Xylosidases/genetics , Animals , Base Sequence , Cell Line , DNA Primers , Dogs , Mice , Mice, Transgenic , Xylan Endo-1,3-beta-Xylosidase
12.
Acta Crystallogr D Biol Crystallogr ; 55(Pt 2): 544-6, 1999 Feb.
Article in English | MEDLINE | ID: mdl-10089373

ABSTRACT

Crystals of 1,5-alpha-arabinanase A from Pseudomonas fluorescens subspecies cellulosa have been obtained by vapour diffusion. The crystals belong to the space group P6122 with unit-cell parameters a = b = 91.6, c = 179.4 A with one molecule in the asymmetric unit. The native crystals and, to a much greater extent, heavy-atom soaked crystals are sensitive to radiation which necessitates cryocooling. Suitable cryocooling conditions have been established, though a shrinkage of the unit cell is observed, with a = b = 88.8 and c = 176.9 A.


Subject(s)
Glycoside Hydrolases/chemistry , Pseudomonas fluorescens/enzymology , Cold Temperature , Crystallization , Crystallography, X-Ray , Protein Conformation
13.
J Biol Chem ; 273(48): 32187-99, 1998 Nov 27.
Article in English | MEDLINE | ID: mdl-9822697

ABSTRACT

The crystal structures of family 10 xylanases indicate that the distal regions of their active sites are quite different, suggesting that the topology of the substrate binding clefts of these enzymes may vary. To test this hypothesis, we have investigated the rate and pattern of xylooligosaccharide cleavage by the family 10 enzymes, Pseudomonas fluorescens subsp. cellulosa xylanase A (XYLA) and Cellulomonas fimi exoglucanase, Cex. The data showed that Cex contained three glycone and two aglycone binding sites, while XYLA had three glycone and four aglycone binding sites, supporting the view that the topologies of substrate binding clefts in family 10 glycanases are not highly conserved. The importance of residues in the substrate binding cleft of XYLA in catalysis and ligand binding were evaluated using site-directed mutagenesis. In addition to providing insight into the function of residues in the glycone region of the active site, the data showed that the aromatic residues Phe-181, Tyr-255, and Tyr-220 play important roles in binding xylose moieties, via hydrophobic interactions, at subsites +1, +3, and +4, respectively. Interestingly, the F181A mutation caused a much larger reduction in the activity of the enzyme against xylooligosaccharides compared with xylan. These data, in conjunction with a previous study (Charnock, S. J., Lakey, J. H., Virden, R., Hughes, N., Sinnott, M. L., Hazlewood, G. P., Pickersgill, R., and Gilbert, H. J. (1997) J. Biol. Chem. 272, 2942-2951), suggest that the binding of xylooligosaccharides at the -2 and +1 subsites ensures that the substrates occupy the -1 and +1 subsites and thus preferentially form productive complexes with the enzyme. Loss of ligand binding at either subsite results in small substrates forming nonproductive complexes with XYLA by binding to distal regions of the substrate binding cleft.


Subject(s)
Xylosidases/chemistry , Xylosidases/metabolism , beta-Glucosidase/chemistry , beta-Glucosidase/metabolism , Amino Acid Sequence , Catalysis , Catalytic Domain , Conserved Sequence , Endo-1,4-beta Xylanases , Glucan 1,3-beta-Glucosidase , Gram-Positive Asporogenous Rods/enzymology , Kinetics , Models, Molecular , Mutagenesis, Site-Directed , Protein Conformation , Pseudomonas fluorescens/enzymology , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Substrate Specificity
14.
Acta Crystallogr D Biol Crystallogr ; 54(Pt 1): 129-31, 1998 Jan 01.
Article in English | MEDLINE | ID: mdl-9761834

ABSTRACT

Crystals of an endo-beta-1,4-mannanase (1,4-beta-D-mannohydrolase, E. C. 3.2.1.78) from Pseudomonas fluorescens sub species cellulosa have been grown by the hanging-drop technique at 291 K over a period of one to two weeks to maximal dimensions of 0.17 x 0.17 x 0.25 mm. These crystals belong to the space group R32 (or R3) with cell dimensions of a = b = 155.4 and c = 250.8 A (hexagonal setting) and contain three (six) molecules in the asymmetric unit. The crystals diffract to at least 3.2 A using a laboratory source and are suitable for structure determination.


Subject(s)
Mannosidases/chemistry , Pseudomonas fluorescens/enzymology , Crystallization , Software , X-Ray Diffraction
15.
Article in English | MEDLINE | ID: mdl-9752722

ABSTRACT

Hydrolysis of the major structural polysaccharides of plant cell walls by the aerobic soil bacterium Pseudomonas fluorescens subsp. cellulosa is attributable to the production of multiple extracellular cellulase and hemicellulase enzymes, which are the products of distinct genes belonging to multigene families. Cloning and sequencing of individual genes, coupled with gene sectioning and functional analysis of the encoded proteins have provided a detailed picture of structure/function relationships and have established the cellulase-hemicellulase system of P. fluorescens subsp. cellulosa as a model for the plant cell wall degrading enzyme systems of aerobic cellulolytic bacteria. Cellulose- and xylan-degrading enzymes produced by the pseudomonad are typically modular in structure and contain catalytic and noncatalytic domains joined together by serine-rich linker sequences. The cellulases include a cellodextrinase; a beta-glucan glucohydrolase and multiple endoglucanases, containing catalytic domains belonging to glycosyl hydrolase families 5, 9, and 45; and cellulose-binding domains of families II and X, both of which are present in each enzyme. Endo-acting xylanases, with catalytic domains belonging to families 10 and 11, and accessory xylan-degrading enzymes produced by P. fluorescens subsp. cellulosa contain cellulose-binding domains of families II, X, and XI, which act by promoting close contact between the catalytic domain of the enzyme and its target substrate. A domain homologous with NodB from rhizobia, present in one xylanase, functions as a deacetylase. Mananase, arabinanase, and galactanase produced by the pseudomonad are single domain enzymes. Crystallographic studies, coupled with detailed kinetic analysis of mutant forms of the enzyme in which key residues have been altered by site-directed mutagenesis, have shown that xylanase A (family 10) has 8-fold alpha/beta barrel architecture, an extended substrate-binding cleft containing at least six xylose-binding pockets and a calcium-binding site that protects the enzyme from thermal inactivation, thermal unfolding, and attack by proteinases. Kinetic studies of mutant and wild-type forms of a mannanase and a galactanase from P. fluorescens subsp. cellulosa have enabled the catalytic mechanisms and key catalytic residues of these enzymes to be identified.


Subject(s)
Hydrolases/chemistry , Hydrolases/metabolism , Plants/chemistry , Polysaccharides/metabolism , Pseudomonas fluorescens/enzymology , Amino Acid Sequence , Catalytic Domain , Cell Wall/chemistry , Cellulase/chemistry , Cellulose/analysis , Cellulose/metabolism , Models, Molecular , Molecular Sequence Data , Polysaccharides/analysis , Protein Structure, Secondary , Sequence Alignment , Sequence Homology, Amino Acid , Xylan Endo-1,3-beta-Xylosidase , Xylosidases/chemistry
16.
Appl Microbiol Biotechnol ; 49(5): 552-9, 1998 May.
Article in English | MEDLINE | ID: mdl-9650253

ABSTRACT

Cellulose-binding domains (CBD) play a pivotal role during plant cell wall hydrolysis by cellulases and xylanases from aerobic soil bacteria. Recently we have reported the molecular characterisation of a single-domain endoglucanase from Cellvibrio mixtus, suggesting that some cellulases produced by this aerobic bacterium preferentially hydrolyse soluble cellulosic substrates. Here we describe the complete nucleotide sequence of a second cellulase gene, celB, from the soil bacterium C. mixtus. It revealed an open reading frame of 1863 bp that encoded a polypeptide, defined as cellulase B (CelB) with a predicted Mr of 66 039. CelB contained a glycosyl hydrolase family 5 catalytic domain at its N terminus followed by two repeated domains, which exhibited sequence identity with type VI CBD previously found in xylanases. Full-length CelB bound to cellulose while catalytically active truncated cellulase derivatives were unable to bind the polysaccharide, confirming that CelB is a modular enzyme and that the type VI CBD homologues were functional. Analysis of the biochemical properties of CelB revealed that the enzyme hydrolyses a range of cellulosic substrates, although it was unable to depolymerise Avicel. We propose that type VI CBD, usually found in xylanases, provide an additional mechanism by which cellulases can accumulate on the surface of the plant cell wall, although they do not potentiate cellulase activity directly. The results demonstrate that C. mixtus, in common with other aerobic bacteria, is able to produce cellulases that are directed to the hydrolysis of cellulose in its natural environment, the plant cell wall.


Subject(s)
Cellulase/genetics , Cellulose/metabolism , Gram-Negative Aerobic Rods and Cocci/enzymology , Soil Microbiology , Amino Acid Sequence , Base Sequence , Binding Sites , Cellulase/chemistry , Cellulase/metabolism , Molecular Sequence Data , Structure-Activity Relationship
18.
FEBS Lett ; 429(3): 312-6, 1998 Jun 16.
Article in English | MEDLINE | ID: mdl-9662439

ABSTRACT

The three surface tryptophans of the Type IIa cellulose binding domain of Pseudomonas fluorescens subsp. cellulosa xylanase A (CBD(XYLA)) were independently mutated to alanine, to create the mutants W13A, W49A and W66A. The three mutant proteins were purified, and their capacity to bind to a variety of ligands was determined. The mutant proteins have native-like structures but exhibited much weaker affinity for crystalline and amorphous cellulose and for cellohexaose than the wild type. These data indicate that all three tryptophans are important for binding to cellulose, and support a model in which the three tryptophans form an aromatic strip on the surface of the protein that binds to a single cellulose.


Subject(s)
Cellulose/metabolism , Oligosaccharides/metabolism , Pseudomonas fluorescens/enzymology , Tryptophan , Xylosidases/metabolism , Bacterial Proteins/metabolism , Binding Sites , Endo-1,4-beta Xylanases , Ligands , Mutagenesis , Nuclear Magnetic Resonance, Biomolecular , Protein Binding , Solubility , Surface Properties
19.
Biochem J ; 331 ( Pt 3): 775-81, 1998 May 01.
Article in English | MEDLINE | ID: mdl-9560304

ABSTRACT

To investigate the mode of action of cellulose-binding domains (CBDs), the Type II CBD from Pseudomonas fluorescens subsp. cellulosa xylanase A (XYLACBD) and cellulase E (CELECBD) were expressed as individual entities or fused to the catalytic domain of a Clostridium thermocellum endoglucanase (EGE). The two CBDs exhibited similar Ka values for bacterial microcrystalline cellulose (CELECBD, 1.62x10(6) M-1; XYLACBD, 1.83x10(6) M-1) and acid-swollen cellulose (CELECBD, 1.66x10(6) M-1; XYLACBD, 1.73x10(6) M-1). NMR spectra of XYLACBD titrated with cello-oligosaccharides showed that the environment of three tryptophan residues was affected when the CBD bound cellohexaose, cellopentaose or cellotetraose. The Ka values of the XYLACBD for C6, C5 and C4 cello-oligosaccharides were estimated to be 3.3x10(2), 1.4x10(2) and 4.0x10(1) M-1 respectively, suggesting that the CBD can accommodate at least six glucose molecules and has a much higher affinity for insoluble cellulose than soluble oligosaccharides. Fusion of either the CELECBD or XYLACBD to the catalytic domain of EGE potentiated the activity of the enzyme against insoluble forms of cellulose but not against carboxymethylcellulose. The increase in cellulase activity was not observed when the CBDs were incubated with the catalytic domain of either EGE or XYLA, with insoluble cellulose and a cellulose/hemicellulose complex respectively as the substrates. Pseudomonas CBDs did not induce the extension of isolated plant cell walls nor weaken cellulose paper strips in the same way as a class of plant cell wall proteins called expansins. The XYLACBD and CELECBD did not release small particles from the surface of cotton. The significance of these results in relation to the mode of action of Type II CBDs is discussed.


Subject(s)
Cellulase/chemistry , Cellulose/metabolism , Pseudomonas fluorescens/enzymology , Xylosidases/chemistry , Bacterial Proteins/chemistry , Binding Sites/genetics , Cellulase/genetics , Clostridium/enzymology , Endo-1,4-beta Xylanases , Kinetics , Magnetic Resonance Spectroscopy , Oligosaccharides/metabolism , Recombinant Fusion Proteins/genetics
20.
FEBS Lett ; 422(2): 221-4, 1998 Jan 30.
Article in English | MEDLINE | ID: mdl-9490011

ABSTRACT

Activity of a cellulosomal endoglucanase (endoglucanase E; EGE) from Clostridium thermocellum against two crystalline forms of cellulose was enhanced by combination with the cellulosome integrating protein (CipA), but CipA did not enhance EGE activity against amorphous cellulose, even though it was able to bind to it. Similarly, CipA added in trans to genetically truncated EGE that was unable to combine with it nevertheless enhanced EGE activity against crystalline cellulose. These results indicate that the CipA cellulose binding domain does not mediate an increase in activity solely by bringing the catalytic subunits of the cellulosome complex into intimate contact with the substrate.


Subject(s)
Bacterial Proteins/metabolism , Cellulase/metabolism , Clostridium/metabolism , Membrane Proteins/metabolism , Bacterial Proteins/biosynthesis , Bacterial Proteins/isolation & purification , Cellulase/biosynthesis , Cellulase/isolation & purification , Cellulose/chemistry , Cellulose/metabolism , Cloning, Molecular , Escherichia coli , Kinetics , Membrane Proteins/biosynthesis , Membrane Proteins/isolation & purification , Organelles/metabolism , Recombinant Proteins/biosynthesis , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Substrate Specificity
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