Enhanced Transmission at the Zeroth-Order Mode of a Terahertz Fabry-Perot Cavity.

A planar Fabry-Perot cavity with intermirror spacing of d ≪ λ is explored for its "zero-order mode" terahertz transmission. The enhanced transmission observed as d → 0 indicates that such cavities satisfy the resonance conditions across a broad terahertz bandwidth. The experimental signatures from this elusive, "technically challenging" regime are evidenced using time-domain terahertz spectroscopy and are complemented by numerical calculations. The results raise intriguing possibilities for terahertz field modulation and pave new paths for strong coupling of multiple transition frequencies simultaneously.

Terahertz spectroscopic signature of the charge density wave in the spin-ladder compound, Sr14Cu24O41.

We provide spectroscopic evidence for the charge density wave (CDW) phason mode at ≈0.93 THz in the two-leg, spin-1/2 ladders of Sr14Cu24O41 using terahertz time-domain spectroscopy. We find that annealing in an oxygen atmosphere or doping with a low concentration of Co (≾1%) does not affect the CDW phason mode. However, Co doping at higher concentrations (10%), wherein the Co enters the ladder layers, destabilizes the CDW. We believe that the suppression of the CDW phase is due to an increase in intraladder overlap integrals through the shrinkage of interplane distance upon Co doping.

Study of Interfacial Charge Transfer from an Electron Rich Organic Molecule to CdTe Quantum Dot by using Stern-Volmer and Stochastic Kinetic Models.

Photoinduced electron transfer (PET) from N-methylaniline (NMA) to a photoexcited CdTe quantum dot (QD*) is studied in toluene. The PET mechanism at low to moderate quencher (NMA) concentrations (<0.08 M) remains mostly collisional with some contributions from QD-NMA complex formation. However, at high quencher concentrations (>0.10 M), QDs form larger numbers of static complexes with NMA molecules leading to a steep positive deviation in the steady-state Stern-Volmer curves. An isothermal titration calorimetry (ITC) study confirms the formation of QD-NMA complexes (K∼150 M-1 ) at high quencher concentrations. Fitting our experimental data using a stochastic kinetic model indicates that the number of NMA molecules attached per QD at highest NMA concentration (∼0.16 M) used in this study decreases from ∼0.76 to ∼0.47 with reducing the QD size from ∼5.2 nm to ∼3.2 nm. However, the PET rate increases with decreasing QD size, which is commensurate with the observation that the chemical driving force (ΔG) increases with decreasing the QD particle size. We have analyzed the PET kinetics mainly by using Stern-Volmer fittings. However, in some cases Tachiya's stochastic kinetic model is used for stoichiometric analysis, which seems to be useful only at high quencher concentrations. The measured PET rate coefficients in all the cases are found to be at least an order of magnitude lower when compared to the diffusion-controlled rate of the reaction medium.

Role of Emissive and Non-Emissive Complex Formations in Photoinduced Electron Transfer Reaction of CdTe Quantum Dots.

Bimolecular photoinduced electron transfer (PET) from excited state CdTe quantum dot (QD*) to an electron deficient molecule 2,4-dinitrotoluene (DNT) is studied in toluene. We observed two types of QD-DNT complex formations; (i) non-emissive complex, in which DNT is embedded deep inside the surface polymer layer of QD and (ii) emissive complex, in which DNT molecules are attached to QDs but approach to the QD core is shielded by polymer layer. Because of its non-emissive nature, the lifetime of QD is not affected by dark complex formation, though the steady-state emission is greatly quenched. However, emissive complex formation causes both, lifetime and steady-state emission quenching. In our fitting model, consideration of Poisson distribution of the attached quencher (DNT) molecules at QD surface enables a comprehensive fitting to our time resolved data. QD-DNT complex formation was confirmed by an isothermal titration calorimetry (ITC) study. Fitting to the time resolved data using a stochastic kinetic model shows moderate increase (0.05 ns-1 to 0.072 ns-1 ) of intrinsic quenching rate with increasing the QD particle size (from ≈3.2 nm to ≈5.2 nm). Our fitting also reveals that the number of DNT molecules attached to a single QD increases from ≈0.1-0.2 to ≈1.2-1.7, as the DNT concentration is increased from ≈1 mm to 17.5 mm. Complex formation at higher quencher concentration assures that the observed PET kinetics is a thermodynamically controlled process where solvent diffusion has no role on it.

Validation of the nearest-neighbor model for Watson-Crick self-complementary DNA duplexes in molecular crowding condition.

Recent advancement in nucleic acid techniques inside cells demands the knowledge of the stability of nucleic acid structures in molecular crowding. The nearest-neighbor model has been successfully used to predict thermodynamic parameters for the formation of nucleic acid duplexes, with significant accuracy in a dilute solution. However, knowledge about the applicability of the model in molecular crowding is still limited. To determine and predict the stabilities of DNA duplexes in a cell-like crowded environment, we systematically investigated the validity of the nearest-neighbor model for Watson-Crick self-complementary DNA duplexes in molecular crowding. The thermodynamic parameters for the duplex formation were measured in the presence of 40 wt% poly(ethylene glycol)200 for different self-complementary DNA oligonucleotides consisting of identical nearest-neighbors in a physiological buffer containing 0.1 M NaCl. The thermodynamic parameters as well as the melting temperatures (Tm) obtained from the UV melting studies revealed similar values for the oligonucleotides having identical nearest-neighbors, suggesting the validity of the nearest-neighbor model in the crowding condition. Linear relationships between the measured ΔG°37 and Tm in crowding condition and those predicted in dilute solutions allowed us to predict ΔG°37, Tm and nearest-neighbor parameters in molecular crowding using existing parameters in the dilute condition, which provides useful information about the thermostability of the self-complementary DNA duplexes in molecular crowding.

Micelle induced dissociation of DNA-ligand complexes: The effect of ligand binding specificity.

We investigate the SDS micelle induced dissociation of a small fluorescent ligand 4',6-diamidino-2-phenylindole (DAPI) bound to DNAs of varying sequences. Steady state and time resolved fluorescence measurements affirm minor groove binding of DAPI to poly(dA).poly(dT) and calf thymus DNA while it intercalates in poly(dG).poly(dC). Calorimetric measurements identify the former mode to be entropy driven and the intercalation to be enthalpy driven. Addition of SDS micelles extracts the ligand out of the DNA and relocates it into the micelle independent of the DNA-ligand binding mode. This process is found to be endothermic which is compensated by a huge gain in the entropy. Circular dichroism measurements indicate that the micelles do not affect the structure of DNAs, however, binding and un-binding of DAPI can introduce noticeable alteration in the DNA structure and consequently on the associated hydration which is reflected in solvation measurement. Consideration of a simple two step equilibrium model seems inadequate to account for the observed thermodynamic costs in the dissociation process. The results have been discussed on the basis of an intricate enthalpy-entropy balance.

Short chain polyethylene glycols unusually assist thermal unfolding of human serum albumin.

In the present study we have investigated the thermal stability of the globular transport protein human serum albumin (HSA), in the presence of two small chain polyethylene glycols (namely PEG 200 and PEG 400). Both near- and far-UV circular dichroism (CD) study reveal that addition of PEG moderately increases the α-helical content of the protein without abruptly changing its tertiary structure. The hydration structure at the protein surface experiences a notable change at 30% PEG (v/v) concentration as evidenced from compressibility and dynamic light scattering (DLS) measurements. Thermal denaturation of HSA in the presence of PEG has been studied by CD and fluorescence spectroscopy using the intrinsic fluorophore tryptophan and it has been found that addition of PEG makes the protein more prone towards unfolding, which is in contrary to what has been observed in case of larger molecular weight polymers. The energetics of the thermal unfolding process has been obtained using differential scanning calorimetry (DSC) measurements. Our study concludes that both the indirect excluded volume principle as well as interaction of the polymer at the protein surface is responsible for the observed change of the unfolding process.

Structural and thermodynamic studies on the interaction of iminium and alkanolamine forms of sanguinarine with hemoglobin.

Binding of the iminium and alkanolamine forms of the benzophenanthridine anticancer alkaloid sanguinarine to hemoglobin (Hb) was investigated by absorbance, fluorescence, and circular dichroism spectral techniques, and by calorimetry. The binding affinity of the charged iminium was found to be of the order of 10(6) M(-1), higher by one order than that of the neutral alkanolamine, from the analysis of the absorbance data. The fluorescence spectral data revealed that the quenching of Hb fluorescence by both forms of sanguinarine is due to the formation of a complex in the ground state and is of an unusual, static nature. Thermodynamic data revealed that the binding of the iminium form was exothermic in nature while that of the alkanolamine was endothermic; the former case predominantly involved electrostatic and hydrogen bonding interactions but the latter was dominated by mostly hydrophobic interactions. Calculation of the molecular distances (r) between the donor (ß-Trp37) and acceptor (iminium and alkanolamine) according to Förster's theory suggests both forms of the alkaloid to be bound close to ß-Trp37 at the α1ß2 interface of the protein. The iminium form induced greater secondary structural changes in Hb than the alkanolamine as revealed by synchronous fluorescence, circular dichroism and three-dimensional fluorescence spectroscopic studies. These results are consistent with a stronger binding of the iminium over the alkanolamine form. Nevertheless, the hydrophobic probe ANS was displaced from hemoglobin more easily by the alkanolamine form than by the iminium. The study showed that Hb binds more strongly to the biologically active iminium form than the alkanolamine, in contrast to the stronger binding of the latter to plasma protein serum albumin. Overall, this study presents insights on the interaction dynamics and energetics of the binding of the two forms of sanguinarine to hemoglobin.

Entropy contribution toward micelle-driven deintercalation of drug-DNA complex.

Micelle-assisted "deintercalation" of intercalated drug/mutagen molecules from DNA is a well-established phenomenon; however, the driving energy cost for such a process is still not properly understood. In the present contribution, we have estimated the various energetic parameters for the SDS micelle-assisted deintercalation of a model DNA intercalator phenosafranine (PSF) using isothermal titration calorimetry (ITC) measurement. Both steady-state and picosecond-resolved fluorescence measurements provide strong evidence for the relocation of PSF molecules from the DNA interior to the micellar interface at an SDS concentration above cmc. The overall deintercalation process has been found to be enthalpy-wise forbidden (endothermic); however, it is strongly favored by a high positive entropy change, which can be correlated with the change in the associated hydration structure at the macromolecular interface.

Binding of isoquinoline alkaloids berberine, palmatine and coralyne to hemoglobin: structural and thermodynamic characterization studies.

Berberine, palmatine and coralyne, the isoquinoline alkaloids distributed in many botanical families, are extensively investigated due to their potential therapeutic actions and clinical utilities. In this work, their binding characteristics to hemoglobin (Hb) were studied by UV-vis absorption spectroscopy, fluorescence spectroscopy, circular dichroism spectroscopy, isothermal calorimetric titration and differential scanning calorimetric techniques. The results indicated that all the three alkaloids caused strong fluorescence quenching of Hb by the static quenching mechanism, but with differing quenching efficiencies. There was a single binding site on Hb for these alkaloids. According to the theory of Förster resonance energy transfer, the binding distances between ß-Trp37 of Hb and berberine, palmatine and coralyne were evaluated to be 2.78 nm, 2.64 nm and 3.29 nm, respectively. The result of synchronous fluorescence, circular dichroism and 3D fluorescence revealed that the polarity around Trp residues experienced a significant increase in the presence of alkaloids. The binding was favoured by enthalpy and entropy changes. Results of circular dichroism, 3D and synchronous fluorescence studies confirmed that the binding of the alkaloids significantly changed the secondary structure of Hb. The studies revealed that berberine and palmatine bound to a site near to the α1ß2 interface on Hb different than coralyne but the affinity of coralyne was one order higher than that of berberine and palmatine.