Genetic pattern and demographic history of cutlassfish (Trichiurus nanhaiensis) in South China Sea by the influence of Pleistocene climatic oscillations.

Trichiurus nanhaiensis is one of the most important commercial fish species in the South China Sea. This study aimed to investigate the level of genetic variation and population genetic structure of T. nanhaiensis in the South China Sea for the first time, using 281 individuals collected from seven locations along the coast of mainland China, Taiwan, and Hainan Island. A high level of haplotype diversity and low nucleotide diversity were detected in the mitochondrial DNA cyt b gene and nuDNA RYR 3 gene. The overall expected heterozygosity (He = 0.693) among the seven populations ranged from 0.681 to 0.706 in microsatellite DNA data, which revealed high levels of genetic diversity. Significant genetic differentiation was found in Taidong populations in Taiwan, revealing the prevention of gene flow caused by the Kuroshio Current. Two major lineages based on the cyt b gene suggested that the Taiwan Strait acted as a geographic barrier for T. nanhaiensis during the glacier periods in the late Pleistocene. The Bayesian skyline plot also revealed that population demographic expansion of T. nanhaiensis was estimated to have occurred in 0.1 Mya. Our results indicated that all populations of T. nanhaiensis had experienced a recent genetic bottleneck following recent expansion based on ABC analysis.

Complete mitogenomes of four Trichiurus species: A taxonomic review of the T.lepturus species complex.

Four Trichiurus species, T.japonicus, T.lepturus, T.nanhaiensis, and T.brevis, from the coasts of the China Seas, have been identified and their entire mitochondrial genomes (mitogenomes) have been sequenced by next-generation sequencing technology. A comparative analysis of five mitogenomes was conducted, including the mitogenome of T.gangeticus. The mitogenomes contained 16.568-16.840 bp and encoded 36 typical mitochondrial genes (13 protein-coding, 2 ribosomal RNA-coding, and 21 transfer RNA-coding genes) and two typical noncoding control regions. Although tRNAPro is absent from Trichiurus mitogenomes, when compared with the 22 tRNAs reported in other vertebrates, the gene arrangements in the mitogenomes of the studied species are consistent with those in most teleost mitogenomes. The full-length sequences and protein-coding genes (PCGs) in the mitogenomes of the five species had obvious AT biases and negative GC skew values. Our study indicate that the specimens in the Indian Ocean are neither T.lepturus nor T.nanhaiensis but they are T.gangeticus; the Trichiurus species composition in the Indian Ocean is totally different from that in Pacific and Atlantic oceans; there are at least two Trichiurus species in Indian Ocean; and the worldwide systematics and diversity of the genus Trichiurus need to be reviewed.

Changes in the trophic niche of Trichiurus japonicus in the Beibu Gulf in different periods.

We measured stable carbon and nitrogen isotopes and calculated trophic level and trophic niche of Trichiurus japonicus, with samples collected from the Beibu Gulf from 2008 to 2009 and 2018. The differences between two periods were compared and analyzed to explore the changes of its ecological adaptation. The results showed that value of δ13C varied substantially between the two periods. The narrowed range and the smaller mean value of δ13C in 2018 suggested that their food source changed from upper-middle to lower-middle waters. The values of δ15N were stable, and the range and mean values of trophic level (3.38-3.43) did not change significantly, which indicated a stable trophic level of T. japonicas in the past decade. The correlation between δ13C and preanal length was not significant, but a positive correlation between δ15N and preanal length. In terms of trophic niche, the indicators had decreased in different degrees in 2018 with 1.1%-32.1%. The value of total area and standard ellipse area decreased from 20.20 and 4.68 to 14.20 and 3.18, respectively, indicating that the niches of T. japonicas in the Beibu Gulf had varied obviously and that their ability to use resources and adapt to the environment had declined. It was speculated that in the past decade, the mean trophic level of T. japonicas in the Beibu Gulf had not changed significantly. Due to the change of food sources, however, the diversity of trophic sources had decreased, and the trophic niche had become smaller.

[Functional diversity of fishes in the Minjiang Estuary, Southeast China]. / é—½æ±Ÿå£é±¼ç±»åŠŸèƒ½å¤šæ ·æ€§.

Based on samples collected by bottom trawl in May, August, November and December 2016 in the Minjiang Estuary, species richness and functional diversity of fishes, as well as their spatial-temporal variations, were quantified by a trait-based approach. The functional diversity varied with the changes of species richness. The species richness averaged across all stations were (17.8±5.1) species in spring, (22.4±5.6) in summer, (17.7±6.3) in autumn, and (12.1±2.3) in winter. Functional diversity also showed seasonal variation, with the highest in summer as (33.94±28.70), followed by (9.93±8.83) in winter, (11.30±7.55) in spring and (19.05±19.32) in autumn. The key functional species varied seasonally, as Setipinna taty contributing to 26% of the total functional value in spring, Polydactylus sextarius at 26% in summer, Harpadon nehereus climbing to 69% in autumn, and Collichthys lucidus at 38% in winter. The seasonal variations of fish species function were determined by life history and its interaction with other species.

[The breadth and overlap of ecological niche of major fish species in the Minjiang River Estuary, China.] / é—½æ±Ÿå£ä¸»è¦æ¸”èŽ·é±¼ç±»çš„ç”Ÿæ€ä½å®½åº¦ä¸Žé‡å .

Based on the seasonal bottom trawl surveys in the Minjiang River Estuary in 2015, the breadth and overlap of ecological niche of major fish species were analyzed. Those fish species were identified based on the index of relative importance (IRI). A total of 137 species belonging to 37 families and 16 orders were collected. Fifteen major fish species were determined by the IRI, including six dominant species Polydactylus sextarius, Harpadon nehereus, Pennahia argentata, Secutor ruconius, Cynoglossus abbreviates, Coilia mystus, and nine important species Collichthys lucidus, Amblychaeturichthys hexanema, Upeneus japonicas, Lagocephalus spadiceus, Pampus argenteus, Larimichthys crocea, Thryssa kammalensis, Takifugu oblongus, Lepturacanthus savala. Seven species whose spatio-temporal niche breadth was higher than 1 in a declining order were C. abbreviates, C. lucidus, S. ruconius, A. hexanema, T. kammalensis, C. mystus, H. nehereus. The ecological niche of major fish species in the Minjiang River Estuary showed obvious seasonal dynamics. The percentage of species pairs with spatio-temporal niche overlap at the meaningful level was as high as 81.9%. Six species pairs reached significant ecological niche overlap, indicating that major fish species had similar distribution at the spatial and temporal scales and the existence of resource utilization competition. The species pairs of U. japonicus-L. savalawas had the highest spatio-temporal niche overlap value, whereas U. japonicus-C. lucidus had the lowest niche overlap value. The spatio-temporal niche overlap of major fish species in the Minjiang River Estuary had substantial seasonal variation.

Seasonal variation in trophic structure of fish community in Minjiang Estuary based on stable isotope technique.

To study the trophic structure of fish community in Minjiang Estuary, we measured the carbon and nitrogen stable isotope ratios (δ13C and δ15N) of common fish species sampled in winter (January), spring (May), summer (August) and autumn (November) of 2015 by trawling, as well as seven quantitative metrics (ratios range of δ15N, NR; ratios range of δ13C, CR; total area, TA; standard ellipse area, SEAc; average distance of centroid, CD; mean nearest neighbor distance, MNND; standard deviation of nearest neighbor distance, SDNND). The results showed significant differences of δ13C values among all the seasons except between summer and autumn. There were significant differences of δ15N values between spring and other three seasons but no significant difference among summer, autumn, and winter. According to the results of the seven quantitative metrics, trophic structure of common fish community remarkably varied among the four seasons, as TA, SEAc, CR, NR, CD and MNND increased in succession from summer, autumn, winter to spring. Our results indicated that seasonal differences in trophic structure of common fish community were related to the fish spawning migration and the diversity of food source.