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1.
Ir Med J ; 115(5): 597, 2022 05 25.
Article in English | MEDLINE | ID: mdl-35696279

ABSTRACT

Aims Traumatic brain injury (TBI) is a leading cause of preventable mortality and morbidity. Our aim was to examine the demographics, injury characteristics and management of TBI patients treated in an intensive care unit (ICU) in an Irish tertiary-level hospital with a neurosurgical department. Methods A retrospective, longitudinal study of all TBI patients treated in ICU between 2013-2018. Results 77% (n=171) were male and median age was 46 (Q1-Q3: 28-62). The most common mechanism of injury was fall from less than two meters (<2m) followed by road traffic accident (RTA). The proportion of injuries due to RTA increased over the six-year period (p=0.006). 41.4% (n=92) of injuries had reported alcohol involvement. Patients with fall<2m had double the median age and double the rate of alcohol involvement compared to those suffering RTA (p<0.001, p<0.001). The neurosurgical intervention rate was 74% (n=165). The median duration of ICU admission and of intracranial-pressure monitoring, advanced ventilation and inotropic therapy increased over the six-year period (p=0.031, p=0.038, p=0.033, p<0.001). Discussion This study's findings could inform precise and impactful public prevention measures. The increasing duration of ICU admission and of other interventions should be examined further for their effect on patient outcome and resource consumption.


Subject(s)
Brain Injuries, Traumatic , Brain Injuries, Traumatic/epidemiology , Brain Injuries, Traumatic/therapy , Female , Hospitalization , Humans , Intensive Care Units , Longitudinal Studies , Male , Middle Aged , Retrospective Studies
2.
BMJ Case Rep ; 20142014 Jun 02.
Article in English | MEDLINE | ID: mdl-24891490

ABSTRACT

Warthin's tumours are the second most common benign tumours of the parotid gland. The authors report the case of a 40-year-old man of Afro-Caribbean decent who presented with a painless mass at the angle of the right mandible. It was an incidental finding while shaving and was not associated with any symptoms. Arrangements were made for him to undergo an ear, nose and throat (ENT) evaluation. Axial contrast-enhanced CT of head and neck region revealed a well-defined cystic lesion. Fine-needle aspiration cytology was inconclusive. Right superficial partial parotidectomy was performed to remove the lesion. Histological examination confirmed a diagnosis of a Warthin's tumour.


Subject(s)
Adenolymphoma/diagnosis , Parotid Neoplasms/diagnosis , Adenolymphoma/diagnostic imaging , Adenolymphoma/pathology , Adenolymphoma/surgery , Adult , Black People , Diagnosis, Differential , Humans , Male , Parotid Gland/pathology , Parotid Gland/surgery , Parotid Neoplasms/diagnostic imaging , Parotid Neoplasms/pathology , Parotid Neoplasms/surgery , Tomography, X-Ray Computed
3.
Acta Physiol (Oxf) ; 210(3): 678-89, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24118769

ABSTRACT

AIM: This study in the anaesthetized rat investigated how renal sympathetic nerve activity and catecholamine release influenced NHE3 abundance and activity in proximal tubular brush border membranes using both in vivo and in vitro approaches. METHODS: Renal excretory function and brush border NHE3 abundance and activity were measured in rat kidneys which underwent renal denervation, renal nerve electrical stimulation and renal infusion of phenylephrine and the NHE3 inhibitor S1661. NHE3 activity and cell surface abundance were also measured in primary cultures of proximal tubular cells treated with noradrenaline and prazosin. RESULTS: Acute renal denervation caused a natriuresis and diuresis, which occurred with a reduction in NHE3 abundance and activity in the brush border membranes. By contrast, low-level electrical stimulation of the renal innervation causing an antinatriuresis and antidiuresis increased NHE3 activity in the brush border membranes. Intrarenal infusion of phenylephrine caused an antinatriuresis and antidiuresis, while blockade of NHE3 activity, using local infusion of the blocker S1661, caused a natriuresis and diuresis. Exposure of primary cultures of proximal tubular cells to noradrenaline increased brush border NHE3 abundance and activity which was blocked by prior exposure to prazosin, indicating it as an α1 -adrenoceptor-mediated mechanism. CONCLUSION: Together, these findings demonstrate that the renal sympathetic nerves not only have a direct action to modulate tubular sodium reabsorption via stimulation of the NHE transporter, but also have an indirect effect, whereby NHE3 abundance is increased within the brush border membrane, thereby increasing the capacity for fluid reabsorption.


Subject(s)
Adrenergic Neurons/metabolism , Kidney Tubules, Proximal/metabolism , Sodium-Hydrogen Exchangers/metabolism , Sympathetic Nervous System/metabolism , Animals , Blotting, Western , Kidney Function Tests , Male , Microvilli/metabolism , Rats , Rats, Wistar , Sodium/metabolism , Sodium-Hydrogen Exchanger 3 , Sympathectomy
4.
Int Surg ; 91(1): 57-60, 2006.
Article in English | MEDLINE | ID: mdl-16706105

ABSTRACT

Primary malignant epithelial tumors of the appendix are uncommon. The most common presentation of appendiceal malignancy is right lower abdominal pain suggestive of acute appendicitis. Presentation caused by loco-regional spread with involvement of neighboring organs is rare. We present the case of a 48-year-old woman with an appendiceal malignancy who presented with symptoms and signs suggestive of complicated diverticular disease with an enterovaginal fistula. From a review of the literature, this is the first report of an appendiceal malignancy presenting in this manner.


Subject(s)
Adenocarcinoma, Mucinous/diagnosis , Appendiceal Neoplasms/diagnosis , Adenocarcinoma, Mucinous/pathology , Adenocarcinoma, Mucinous/surgery , Appendiceal Neoplasms/pathology , Appendiceal Neoplasms/surgery , Diverticulitis/diagnosis , Female , Humans , Intestinal Fistula/diagnosis , Middle Aged , Tomography, X-Ray Computed , Vaginal Fistula/diagnosis
5.
J Clin Pathol ; 59(5): 454-9, 2006 May.
Article in English | MEDLINE | ID: mdl-16461806

ABSTRACT

The role of the pathologist in the preoperative diagnosis of phyllodes tumours of the breast is critical to appropriate surgical planning. However, reliable differentiation of phyllodes tumour from cellular fibroadenoma remains difficult. Preoperative diagnostic accuracy allows correct surgical treatment, avoiding the pitfalls of reoperation because of inadequate excision, or surgical overtreatment. Specific clinical indices may arouse diagnostic suspicion but are unreliable for confirmation, as with current imaging modes. Fine needle aspiration cytology has a high false negative rate. Few studies have evaluated the role of core needle biopsy, but it may prove a useful adjunct. Both diagnostic and prognostic information may in future be gained from application of immunohistochemical and other techniques assessing the expression of proliferative markers including p53, Ki-67, and others.


Subject(s)
Breast Neoplasms/pathology , Breast/pathology , Phyllodes Tumor/pathology , Adult , Age Factors , Biopsy/methods , Diagnosis, Differential , Female , Fibroadenoma/pathology , Humans , Patient Selection
7.
Histopathology ; 42(6): 588-93, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12786895

ABSTRACT

AIMS: To assess the frequency of expression and potential diagnostic utility of calponin and caldesmon in synovial sarcomas. METHODS AND RESULTS: Immunohistochemistry with antibodies to calponin and h-caldesmon was undertaken in paraffin sections from 50 synovial sarcomas (19 biphasic and 31 monophasic, of which one biphasic and eight monophasic tumours had poorly differentiated areas), 10 each of malignant peripheral nerve sheath tumour (MPNST), solitary fibrous tumour (SFT), dermatofibrosarcoma (DFSP), Ewing's sarcoma (ES/PNET), and neuroblastoma, eight alveolar rhabdomyosarcomas, five adult fibrosarcomas and five carcinosarcomas. Nine of 19 biphasic synovial sarcomas were positive for calponin in spindle and glandular areas, nine in spindle cells only, and one in glands only. All monophasic synovial sarcomas and poorly differentiated areas expressed calponin; in monophasic tumours this was focally (29% of cases), moderately (39%), or diffusely (32%) positive and the poorly differentiated areas were usually moderately or diffusely positive. Four synovial sarcomas showed focal reactivity for h-caldesmon. Calponin was found in 4/10 MPNST, 7/10 SFT, 4/10 DFSP, 3/5 fibrosarcomas and the spindle component of the carcinosarcomas. H-caldesmon was weakly positive in 1/10 MPNST, 4/10 SFT, 0/10 DFSP, 0/5 fibrosarcomas and 1/5 carcinosarcomas (glands only). Both markers were negative in the other small round cell tumours. CONCLUSIONS: Calponin can be used as an additional marker for synovial sarcoma. Its absence argues against the diagnosis. The presence of calponin might be useful in distinguishing poorly differentiated synovial sarcoma from other small round cell tumours. H-caldesmon is not helpful in diagnosis of synovial sarcoma.


Subject(s)
Calcium-Binding Proteins/metabolism , Calmodulin-Binding Proteins/metabolism , Sarcoma, Synovial/metabolism , Biomarkers, Tumor/metabolism , Humans , Immunoenzyme Techniques , Microfilament Proteins , Sarcoma, Synovial/pathology , Calponins
8.
Surgeon ; 1(5): 286-9, 2003 Oct.
Article in English | MEDLINE | ID: mdl-15570781

ABSTRACT

Granulomatous inflammation of the appendix is uncommon. It can be caused by a variety of conditions, including systemic disorders such as Crohn's disease and sarcoidosis, and infections such as mycobacterium tuberculosis, yersinia pseudotuberculosis, parasites and fungi. Granulomatous appendicitis as an isolated pathological entity unassociated with systemic disease is rare. Isolated granulomatous inflammation of the appendix of unknown aetiology, otherwise known as idiopathic granulomatous appendicitis is extremely rare. Patients with this condition present with the typical signs and symptoms of acute appendicitis. We present a series of patients with isolated granulomatous inflammation of the appendix, and discuss the difficulties encountered in the management of this condition.


Subject(s)
Appendicitis/etiology , Granuloma/complications , Adolescent , Adult , Appendectomy , Appendicitis/diagnosis , Appendicitis/surgery , Female , Granuloma/diagnosis , Granuloma/pathology , Granuloma/surgery , Humans , Male
9.
Rural Remote Health ; 3(2): 220, 2003.
Article in English | MEDLINE | ID: mdl-15877513

ABSTRACT

INTRODUCTION: In 1991 the Philippines Government introduced a major devolution of national government services, which included the first wave of health sector reform, through the introduction of the Local Government Code of 1991. The Code devolved basic services for agriculture extension, forest management, health services, barangay (township) roads and social welfare to Local Government Units. In 1992, the Philippines Government devolved the management and delivery of health services from the National Department of Health to locally elected provincial, city and municipal governments. AIM: The aim of this review is to (i) Provide a background to the introduction of devolution to the health system in the Philippines and to (ii) describe the impact of devolution on the structure and functioning of the health system in defined locations. METHOD: International literature was reviewed on the subjects of decentralization. Rapid appraisals of health management systems were conducted in both provinces. Additional data were accessed from the rural health information system and previous consultant reports. RESULTS: Subsequent to the introduction of devolution, quality and coverage of health services declined in some locations, particularly in rural and remote areas. It was found that in 1992-1997, system effects included a breakdown in management systems between levels of government, declining utilization particularly in the hospital sector, poor staff morale, a decline in maintenance of infrastructure and under financing of operational costs of services. CONCLUSION: The aim of decentralization is to widen decision-making space of middle level managers, enhance resource allocations from central to peripheral areas and to improve the efficiency and effectiveness of health services management. The findings of the historical review of devolution in the Philippines reveals some consistencies with the international literature, which describe some negative effects of decentralization, and provide a rationale for the Philippines in undertaking a second wave of reform in order to 'make devolution work'.

10.
Eur J Surg Oncol ; 27(8): 723-30, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11735168

ABSTRACT

AIM: High-grade malignant phyllodes tumour (MPT) is a rare but aggressive breast malignancy and forms approximately 25% of all phyllodes tumours. The aim of the study was to determine parameters that influence outcome in high-grade MPT. METHODS: This study consisted of 48 women diagnosed with high-grade MPT. All patients were treated primarily with surgery by local excision (LE, margins <1 cm), wide local excision (WLE, margins > or =1 cm) or mastectomy. Cox's regression was used for multivariate analysis of the data. RESULTS: The mean patient age was 47 (range 21-85) years and the average tumour size was 7.8 (range 1.5-20) cm. Ten patients were treated with LE, 14 with WLE and 24 with mastectomy. The median follow-up was 9 years (range 5 months-28 years). Local recurrence (LR) occurred in 19 patients (40%) at mean time of 28 (range 5-84) months after primary treatment. Distant metastasis (DM) occurred in 13 (27%) patients at average time of 25.6 (range 6-120) months. LR, subsequent metastatic spread and survival following treatment of MPT were related to tumour size and excision margins, but not to other clinical or histopathological characteristics. CONCLUSION: Tumour size and surgical margins were found to be the principal determinants of LR and DM. Complete surgical excision, by mastectomy if necessary, is important in the primary surgical treatment of high-grade MPT.


Subject(s)
Breast Neoplasms/surgery , Mastectomy, Segmental , Mastectomy , Neoplasm Metastasis , Neoplasm Recurrence, Local , Phyllodes Tumor/surgery , Adult , Aged , Aged, 80 and over , Breast Neoplasms/pathology , Female , Follow-Up Studies , Humans , Middle Aged , Neoplasm Staging , Neoplasm, Residual , Phyllodes Tumor/pathology , Regression Analysis , Treatment Outcome
11.
Chem Biol ; 7(7): 505-14, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10903933

ABSTRACT

BACKGROUND: The D-alanyl-D-lactate (D-Ala-D-Lac) ligase is required for synthesis of altered peptidoglycan (PG) termini in the VanA phenotype of vancomycin-resistant enterococci (VRE), and the D-alanyl-D-serine (D-Ala-D-Ser) ligase is required for the VanC phenotype of VRE. Here we have compared these with the Escherichia coli D-Ala-D-Ala ligase DdlB for formation of the enzyme-bound D-alanyl phosphate, D-Ala(1)-PO(3)(2-) (D-Ala(1)-P), intermediate. RESULTS: The VanC2 ligase catalyzes a molecular isotope exchange (MIX) partial reaction, incorporating radioactivity from (14)C-D-Ser into D-Ala-(14)C-D-Ser at a rate of 0.7 min(-1), which approaches kinetic competence for the reversible D-Ala(1)-P formation from the back direction. A positional isotope exchange (PIX) study with the VanC2 and VanA ligases displayed a D-Ala(1)-dependent bridge to nonbridge exchange of the oxygen-18 label of [gamma-(18)O(4)]-ATP at rates of up to 0.6 min(-1); this exchange was completely suppressed by the addition of the second substrate D-Ser or D-Lac, respectively, as the D-Ala(1)-P intermediate was swept in the forward direction. As a third criterion for formation of bound D-Ala(1)-P, we conducted rapid quench studies to detect bursts of ADP formation in the first turnover of DdlB and VanA. With E. coli DdlB, there was a burst amplitude of ADP corresponding to 26-30% of the DdlB active sites, followed by the expected steady-state rate of 620-650 min(-1). For D-Ala-D-Lac and D-Ala-D-Ala synthesis by VanA, we measured a burst of 25-30% or 51% of active enzyme, respectively. CONCLUSIONS: These three approaches support the rapid (more than 1000 min(-1)), reversible formation of the enzyme intermediate D-Ala(1)-P by members of the D-Ala-D-X (where X is Ala, Ser or Lac) ligase superfamily.


Subject(s)
Bacterial Proteins/metabolism , Carbon-Oxygen Ligases/metabolism , Enterococcus/enzymology , Peptide Synthases/metabolism , Vancomycin Resistance , Adenosine Triphosphate/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/isolation & purification , Carbon-Oxygen Ligases/chemistry , Carbon-Oxygen Ligases/isolation & purification , Catalysis , Enzyme Inhibitors , Isotope Labeling , Kinetics , Molecular Structure , Peptide Synthases/chemistry , Peptide Synthases/isolation & purification , Peptidoglycan/drug effects , Peptidoglycan/metabolism , Substrate Specificity
12.
Chem Biol ; 7(5): R109-19, 2000 May.
Article in English | MEDLINE | ID: mdl-10801476

ABSTRACT

Vancomycin binds to bacterial cell-wall intermediates to achieve its antibiotic effect. Infections of vancomycin-resistant enterococci are, however, becoming an increasing problem; the bacteria are resistant because they synthesize different cell-wall intermediates. The enzymes involved in cell-wall biosynthesis, therefore, are potential targets for combating this resistance. Recent biochemical and crystallographic results are providing mechanistic and structural details about some of these targets.


Subject(s)
Enterococcus/drug effects , Enterococcus/enzymology , Peptide Synthases/chemistry , Peptide Synthases/metabolism , Peptidoglycan/biosynthesis , Vancomycin Resistance , Vancomycin/pharmacology , Enterococcus/metabolism , Humans
13.
Structure ; 8(5): 463-70, 2000 May 15.
Article in English | MEDLINE | ID: mdl-10801495

ABSTRACT

BACKGROUND: The bacterial cell wall and the enzymes that synthesize it are targets of glycopeptide antibiotics (vancomycins and teicoplanins) and beta-lactams (penicillins and cephalosporins). Biosynthesis of cell wall peptidoglycan requires a crosslinking of peptidyl moieties on adjacent glycan strands. The D-alanine-D-alanine transpeptidase, which catalyzes this crosslinking, is the target of beta-lactam antibiotics. Glycopeptides, in contrast, do not inhibit an enzyme, but bind directly to D-alanine-D-alanine and prevent subsequent crosslinking by the transpeptidase. Clinical resistance to vancomycin in enterococcal pathogens has been traced to altered ligases producing D-alanine-D-lactate rather than D-alanine-D-alanine. RESULTS: The structure of a D-alanine-D-lactate ligase has been determined by multiple anomalous dispersion (MAD) phasing to 2.4 A resolution. Co-crystallization of the Leuconostoc mesenteroides LmDdl2 ligase with ATP and a di-D-methylphosphinate produced ADP and a phosphinophosphate analog of the reaction intermediate of cell wall peptidoglycan biosynthesis. Comparison of this D-alanine-D-lactate ligase with the known structure of DdlB D-alanine-D-alanine ligase, a wild-type enzyme that does not provide vancomycin resistance, reveals alterations in the size and hydrophobicity of the site for D-lactate binding (subsite 2). A decrease was noted in the ability of the ligase to hydrogen bond a substrate molecule entering subsite 2. CONCLUSIONS: Structural differences at subsite 2 of the D-alanine-D-lactate ligase help explain a substrate specificity shift (D-alanine to D-lactate) leading to remodeled cell wall peptidoglycan and vancomycin resistance in Gram-positive pathogens.


Subject(s)
Bacterial Proteins/chemistry , Carbon-Oxygen Ligases/chemistry , Leuconostoc/enzymology , Models, Molecular , Vancomycin Resistance , Adenosine Diphosphate/metabolism , Adenosine Triphosphate/metabolism , Alanine/analogs & derivatives , Alanine/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Binding Sites/physiology , Carbon-Oxygen Ligases/genetics , Carbon-Oxygen Ligases/metabolism , Catalytic Domain/physiology , Crystallization , Crystallography, X-Ray , Escherichia coli/genetics , Leuconostoc/genetics , Molecular Sequence Data , Protein Folding , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Substrate Specificity/physiology
14.
Cell Death Differ ; 7(3): 302-13, 2000 Mar.
Article in English | MEDLINE | ID: mdl-10745275

ABSTRACT

Mammary epithelial cells in primary cell culture require both growth factors and specific extracellular matrix (ECM)-attachment for survival. Here we demonstrate for the first time that inhibition of the ECM-induced Erk 1/Erk 2 (p42/44 MAPK) pathway, by PD 98059, leads to apoptosis in these cells. Associated with this cell death is a possible compensatory signalling through the p38 MAP kinase pathway the inhibition of which, by SB 203580, leads to a more rapid onset of apoptosis. This provides evidence for a hitherto undescribed Erk 1/Erk 2 to p38 MAP kinase pathway 'cross-talk' that is essential for the survival of these cells. The cell death associated with inhibition of these two MAP kinase pathways however, occurred in the presence of insulin that activates the classical PI-3 kinase-dependent Akt/PKB survival signals and Akt phosphorylation. Cell death induced by inhibition of the MAP kinase pathways did not affect Akt phosphorylation and may, thus, be independent of PI-3 kinase signalling.


Subject(s)
Apoptosis , Extracellular Matrix/metabolism , MAP Kinase Signaling System , Mammary Glands, Animal/cytology , Animals , Apoptosis/drug effects , Cell Survival , Cells, Cultured , Chromones/pharmacology , Enzyme Inhibitors/pharmacology , Epithelial Cells/drug effects , Female , Flavonoids/pharmacology , Imidazoles/pharmacology , Mice , Mitogen-Activated Protein Kinase 1/antagonists & inhibitors , Mitogen-Activated Protein Kinase 1/metabolism , Mitogen-Activated Protein Kinase 3 , Mitogen-Activated Protein Kinases/antagonists & inhibitors , Mitogen-Activated Protein Kinases/metabolism , Morpholines/pharmacology , Phosphatidylinositol 3-Kinases/metabolism , Phosphoinositide-3 Kinase Inhibitors , Pyridines/pharmacology , p38 Mitogen-Activated Protein Kinases
15.
Biochemistry ; 38(42): 14006-22, 1999 Oct 19.
Article in English | MEDLINE | ID: mdl-10529248

ABSTRACT

Bacteria with either intrinsic or inducible resistance to vancomycin make peptidoglycan (PG) precursors of lowered affinity for the antibiotic by switching the PG-D-Ala-D-Ala termini that are the antibiotic-binding target to either PG-D-Ala-D-lactate or PG-D-Ala-D-Ser as a consequence of altered specificity of the D-Ala-D-X ligases in the cell wall biosynthetic pathway. The VanA ligase of vancomycin-resistant enterococci, a D-Ala-D-lactate depsipeptide ligase, has the ability to recognize and activate the weak nucleophile D-lactate selectively over D-Ala(2) to capture the D-Ala(1)-OPO(3)(2)(-) intermediate in the ligase active site. To ensure this selectivity in catalysis, VanA largely rejects the protonated (NH(3)(+)) form of D-Ala at subsite 2 (K(M2) of 210 mM at pH 7.5) but not at subsite 1. In contrast, the deprotonated (NH(2)) form of D-Ala (K(M2) of 0.66 mM, k(cat) of 550 min(-)(1)) is a 17-fold better substrate compared to D-lactate (K(M) of 0.69 mM, k(cat) of 32 min(-)(1)). The low concentration of the free amine form of D-Ala at physiological conditions (i.e., 0.1% at pH 7.0) explains the inefficiency of VanA in dipeptide synthesis. Mutational analysis revealed a residue in the putative omega-loop region, Arg242, which is partially responsible for electrostatically repelling the protonated form of D-Ala(2). The VanA enzyme represents a subfamily of D-Ala-D-X ligases in which two key active-site residues (Lys215 and Tyr216) in the active-site omega-loop of the Escherichia coli D-Ala-D-Ala ligase are absent. To look for functional complements in VanA, we have mutated 20 residues and evaluated effects on catalytic efficiency for both D-Ala-D-Ala dipeptide and D-Ala-D-lactate depsipeptide ligation. Mutation of Asp232 caused substantial defects in both dipeptide and depsipeptide ligase activity, suggesting a role in maintaining the loop position. In contrast, the H244A mutation caused an increase in K(M2) for D-lactate but not D-Ala, indicating a differential role for His244 in the recognition of the weaker nucleophile D-lactate. Replacement of the VanA omega-loop by that of VanC2, a D-Ala-D-Ser ligase, eliminated D-Ala-D-lactate activity while improving by 3-fold the catalytic efficacy of D-Ala-D-Ala and D-Ala-D-Ser activity.


Subject(s)
Alanine/metabolism , Bacterial Proteins/metabolism , Carbon-Oxygen Ligases/metabolism , Enterococcus/enzymology , Lactic Acid/metabolism , Peptide Synthases/metabolism , Vancomycin/chemistry , Adenosine Triphosphatases/genetics , Adenosine Triphosphatases/metabolism , Alanine/analogs & derivatives , Alanine/chemistry , Amino Acid Sequence , Anti-Bacterial Agents/metabolism , Arginine/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Base Sequence , Carbon-Oxygen Ligases/chemistry , Carbon-Oxygen Ligases/genetics , Dipeptides/metabolism , Enterococcus/genetics , Enzyme Activation/genetics , Histidine/genetics , Hydrogen-Ion Concentration , Lactic Acid/chemistry , Leuconostoc/enzymology , Ligands , Lysine/genetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Peptide Synthases/chemistry , Peptide Synthases/genetics , Stereoisomerism , Templates, Genetic , Vancomycin Resistance
16.
Biochem Biophys Res Commun ; 262(1): 60-3, 1999 Aug 19.
Article in English | MEDLINE | ID: mdl-10448068

ABSTRACT

The fruiting body of the basidiomycete fungus Armillaria mellea produces a lysine-specific proteinase which exhibits both potent fibrinolytic activity and a remarkable resistance to denaturing agents. An improved purification protocol has been developed for this enzyme and the sequence of the 26 N-terminal amino acid residues of the pure protein has been determined by gas-phase sequencing. Searches of the SwissProt database showed that the N-terminal sequence of A. mellea proteinase is highly similar to those of lysine-specific metalloendopeptidases from the basidiomycetes Grifola frondosa and Pleurotus ostreatus. These results support the view that the A. mellea proteinase is a member of a novel class of lysine-specific metalloendopeptidases which may be exclusive to basidiomycete fungi.


Subject(s)
Basidiomycota/enzymology , Endopeptidases/metabolism , Metalloendopeptidases/metabolism , Amino Acid Sequence , Basidiomycota/growth & development , Endopeptidases/isolation & purification , Fungal Proteins/isolation & purification , Fungal Proteins/metabolism , Metalloendopeptidases/isolation & purification , Molecular Sequence Data , Molecular Weight , Sequence Alignment , Sequence Analysis , Sequence Homology, Amino Acid , Species Specificity
17.
Biochem J ; 339 ( Pt 3): 713-20, 1999 May 01.
Article in English | MEDLINE | ID: mdl-10215611

ABSTRACT

We have purified an endo-exonuclease from the fruiting body of the basidiomycete fungus Armillaria mellea by using an ethanol fractionation step, followed by two rounds of column chromatography. The enzyme had an apparent molecular mass of 17500 Da and was shown to exist as a monomer by gel-filtration analysis. The nuclease was active on both double-stranded and single-stranded DNA but not on RNA. It was optimally active at pH8.5 and also exhibited a significant degree of thermostability. Three bivalent metal ions, Mg2+, Co2+ and Mn2+, acted as cofactors in the catalysis. It was also inhibited by high salt concentrations: activity was completely abolished at 150 mM NaCl. The nuclease possessed both endonuclease activity on supercoiled DNA and a 3'-5' (but not a 5'-3') exonuclease activity. It generated 5'-phosphomonoesters on its products that, after a prolonged incubation, were hydrolysed to a mixture of free mononucleotides and small oligonucleotides ranging in size from two to eight bases. Elucidation of its N-terminal amino acid sequence permitted the cDNA cloning of the A. mellea nuclease via a PCR-based approach. Peptide mapping of the purified enzyme generated patterns consistent with the amino acid sequence coded for by the cloned cDNA. A BLAST search of the SwissProt database revealed that A. mellea nuclease shared significant amino acid similarity with two nucleases from Bacillus subtilis, suggesting that the three might constitute a distinct class of nucleolytic enzymes.


Subject(s)
Basidiomycota/enzymology , Endonucleases/metabolism , Exonucleases/metabolism , Amino Acid Sequence , Bacillus subtilis/enzymology , Bacillus subtilis/genetics , Base Sequence , Basidiomycota/genetics , Catalysis/drug effects , Cations/pharmacology , Chromatography, Liquid , Cloning, Molecular , DNA/metabolism , Endonucleases/chemistry , Endonucleases/genetics , Endonucleases/isolation & purification , Enzyme Stability/drug effects , Exonucleases/chemistry , Exonucleases/genetics , Exonucleases/isolation & purification , Hydrogen-Ion Concentration , Metals/pharmacology , Molecular Sequence Data , Molecular Weight , Peptide Mapping , Polymerase Chain Reaction , Salts/pharmacology , Sequence Homology, Amino Acid , Substrate Specificity , Temperature
18.
Chem Biol ; 5(4): 197-207, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9545431

ABSTRACT

BACKGROUND: The rising number of vancomycin-resistant enterococci (VREs) is a major concern to modern medicine because vancomycin is currently the 'last resort' drug for life-threatening infections. The D-alanyl-D-X ligases (where X is an hydroxy or amino acid) of bacteria catalyze a critical step in bacterial cell-wall peptidoglycan assembly. In bacteria that produce glycopeptide antibiotics and in opportunistic pathogens, including VREs, D-, D-ligases serve as switches that confer antibiotic resistance on the bacteria themselves. Peptidoglycans in vancomycin-sensitive bacteria end in D-alanyl-D-alanine, whereas in vancomycin-resistant bacteria they end in D-alanyl-D-lactate or D-alanyl-D-serine. RESULTS: We demonstrate that the selective utilization of D-serine by the Enterococcus casseliflavus VanC2 ligase can be altered by mutagenesis of one of two residues identified by homology to the X-ray structure of the Escherichia coli D-alanyl-Dalanine ligase (DdlB). The Arg322-->Met (R322M) and Phe250-->Tyr (F250Y) ligase mutants show a 36-44-fold decrease in the use of D-serine, as well as broadened specificity for utilization of other D-amino acids in place of D-serine. The F250Y R322M double mutant is effectively disabled as a D-alanyl-D-serine ligase and retains 10% of the catalytic activity of wild-type D-alanyl-D-alanine ligases, reflecting a 6,000-fold switch to the D-alanyl-D-alanine peptide. Correspondingly, the Leu282-->Arg mutant of the wild-type E. coli DdlB produced a 560-fold switch towards D-alanyl-D-serine formation. CONCLUSIONS: Single-residue changes in the active-site regions of D-, D-ligases can cause substantial changes in recognition and activation of hydroxy or amino acids that have consequences for glycopeptide antibiotic efficacy. The observations reported here should provide an approach for combatting antibiotic-resistant bacteria.


Subject(s)
Bacterial Proteins/genetics , Enterococcus/drug effects , Enterococcus/enzymology , Ligases/genetics , Membrane Proteins/genetics , Peptide Synthases/genetics , Amino Acid Sequence , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/chemistry , Bacterial Proteins/drug effects , Drug Resistance, Microbial/genetics , Ligases/chemistry , Ligases/drug effects , Membrane Proteins/chemistry , Membrane Proteins/drug effects , Models, Molecular , Molecular Sequence Data , Peptide Synthases/chemistry , Phenotype , Phylogeny , Point Mutation , Sequence Alignment , Sequence Homology, Amino Acid , Transformation, Bacterial , Vancomycin/pharmacology
19.
Hum Pathol ; 29(4): 383-9, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9563789

ABSTRACT

Strong epidemiological evidence links human papilloma viruses (HPV) with the development of cervical intraepithelial neoplasia (CIN) and invasive cancers of the uterine cervix. The localization of HPV DNA sequences high up in the female genital tract (in benign and malignant lesions) is not that uncommon, but its precise significance is uncertain. In particular, the detection of HPV DNA sequences by polymerase chain reaction (PCR) needs careful interpretation, because the source of the amplicon may emanate from tumor cells, direct contamination from the cervix, or possibly from extratumoral sites in the endometrium. We have previously reported the identification of koilocyte-like changes in the squamous epithelium of some endometrial adenoacanthomas. Adenoacanthomas (adenocarcinoma with squamous metaplasia) are mixed epithelial tumors arising in the endometrium composed of malignant glandular areas admixed with benign metaplastic squamous epithelium. The rarer adenosquamous carcinoma containing both malignant glandular and squamous areas is also described. The origin of benign/malignant squamous epithelial islands in endometrial tumors has been the subject of speculation, with some investigators considering an origin from metaplastic glandular endometrial cells. In this study, we examined 10 normal endometrial samples, 20 adenocarcinomas, 41 adenocarcinomas with squamous metaplasia, and two adenosquamous carcinomas, (including control cervical material where possible) for the presence of HPV DNA sequences using nonisotopic in situ hybridization (NISH), type-specific HPV PCR, general primer PCR (to detect sequenced and unsequenced HPVs), and PCR in situ hybridization (PCR-ISH). We did not identify HPV DNA sequences in normal endometrial tissue. In adenocarcinomas (endometrioid type), HPV was only identified in 2 of 20 cases by PCR, both of which were HPV 11 positive. We were unsuccessful in identifying HPV in endometrial carcinomas by NISH or by PCR-ISH, raising the possibility of contamination from the cervix in the two positive cases. In adenoacanthomas, a low-risk HPV type (HPV 6) was found in 19 of 41 cases. NISH signals were intranuclear in location in squamous regions of adenoacanthomas. Additional positive nuclei were uncovered using PCR-ISH, which increases the sensitivity of standard NISH detection. HPV DNA sequences were located in some malignant endometrial glandular epithelial cells, but this accounted for a minority of samples. HPV DNA sequences were not detected in extraepithelial sites. Mixed infection by two different HPV types was identified in two cases. Most cases showed similar HPV types in cervical and endometrial lesions, although discordant cases were uncovered. In adenosquamous carcinomas, one case showed mixed infection with HPV 6 and 33 by PCR. The apparent segregation of low-risk HPV type (HPV 6) with benign squamous metaplastic epithelium in adenocarcinoma with squamous metaplasia, and high-risk type (HPV 33) with malignant squamous epithelium in adenosquamous carcinoma, raises important questions in relation to the role of HPVs in mixed epithelial tumors of the endometrium and their interplay in the pathogenesis of squamous metaplasia at extracervical sites.


Subject(s)
Adenocarcinoma/virology , Carcinoma, Adenosquamous/virology , Endometrial Neoplasms/virology , Papillomaviridae/isolation & purification , Adenocarcinoma/pathology , Carcinoma, Adenosquamous/pathology , Cervix Uteri/pathology , Cervix Uteri/virology , DNA, Viral/analysis , Endometrial Neoplasms/pathology , Female , Humans , In Situ Hybridization , Metaplasia/pathology , Metaplasia/virology , Papillomaviridae/classification , Polymerase Chain Reaction
20.
J Anim Sci ; 71(2): 291-7, 1993 Feb.
Article in English | MEDLINE | ID: mdl-8440646

ABSTRACT

The objectives of this study were to determine 1) the effect of bull:heifer ratio on reproductive performance and associated costs and return on heifers in synchronized estrus and 2) the effect of estrus synchronization on reproductive performance and economic variables, in a multiple-sire, pasture breeding situation. Eight hundred yearling beef heifers and 28 mature, sexually experienced beef bulls were allotted to four treatments (two replicates per treatment) at bull:heifer ratios of 2 per 100 (1:50; Treatment 1), 2 per 100 (1:50; Treatment 2), 4 per 100 (1:25; Treatment 3), and 6 per 100 (1:16; Treatment 4). Treatment 1 (control) used nonsynchronized heifers, whereas heifers in Treatments 2, 3, and 4 were synchronized using the 33-d melengestrol acetate (MGA)-prostaglandin F2 alpha (PGF2 alpha) program. Pregnancy results after a 28-d breeding season indicate that there may be a limit to how many estrus-synchronized heifers bulls can impregnate. Treatment 2 showed a 6% decrease (P < .10) in pregnancy rate (77%) compared with Treatment 3 (83%), indicating that the bulls probably were not able to service all the synchronized heifers. Treatments 3 and 4 had similar pregnancy rates (83 and 84%, respectively). Treatment 4 had a 3-d advantage (P < .01) over Treatment 3 in average day of conception. However, based on economic analysis, Treatment 3 exhibited greater returns. Estrus synchronization failed to provide any advantage in pregnancy rate or day of conception. For unknown reasons, the control, nonsynchronized heifers cycled and conceived as if they were synchronized.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Breeding/methods , Cattle/physiology , Estrus Synchronization , Fertilization , Animals , Breeding/economics , Costs and Cost Analysis , Female , Male , Pregnancy
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