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1.
Life Sci Alliance ; 5(12)2022 10 13.
Article in English | MEDLINE | ID: mdl-36229063

ABSTRACT

Aquaporins are protein channels embedded in the lipid bilayer in cells from all organisms on earth that are crucial for water homeostasis. In fish, aquaporins are believed to be important for osmoregulation; however, the molecular mechanism behind this is poorly understood. Here, we present the first structural and functional characterization of a fish aquaporin; cpAQP1aa from the fresh water fish climbing perch (<i>Anabas testudineus</i>), a species that is of high osmoregulatory interest because of its ability to spend time in seawater and on land. These studies show that cpAQP1aa is a water-specific aquaporin with a unique fold on the extracellular side that results in a constriction region. Functional analysis combined with molecular dynamic simulations suggests that phosphorylation at two sites causes structural perturbations in this region that may have implications for channel gating from the extracellular side.


Subject(s)
Aquaporins , Lipid Bilayers , Animals , Aquaporins/chemistry , Aquaporins/metabolism , Fresh Water , Seawater , Water/metabolism
2.
FEMS Yeast Res ; 22(1)2022 10 20.
Article in English | MEDLINE | ID: mdl-36175165

ABSTRACT

Membrane proteins are challenging targets to functionally and structurally characterize. An enduring bottleneck in their study is the reliable production of sufficient yields of stable protein. Here, we evaluate all eukaryotic membrane protein production experiments that have supported the deposition of a high-resolution structure. We focused on the most common yeast host systems, Saccharomyces cerevisiae and Pichia pastoris. The first high-resolution structure of a membrane protein produced in yeast was described in 1999 and today there are 186 structures of α-helical membrane proteins, representing 101 unique proteins from 37 families. Homologous and heterologous production are equally common in S. cerevisiae, while heterologous production dominates in P. pastoris, especially of human proteins, which represent about one-third of the total. Investigating protein engineering approaches (78 proteins from seven families) demonstrated that the majority contained a polyhistidine tag for purification, typically at the C-terminus of the protein. Codon optimization and truncation of hydrophilic extensions were also common approaches to improve yields. We conclude that yeast remains a useful production host for the study of α-helical membrane proteins.


Subject(s)
Pichia , Saccharomyces cerevisiae , Humans , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Pichia/genetics , Pichia/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Codon/metabolism , Protein Engineering , Recombinant Proteins/genetics , Recombinant Proteins/metabolism
3.
Sci Rep ; 11(1): 19232, 2021 09 28.
Article in English | MEDLINE | ID: mdl-34584201

ABSTRACT

Interactions between membrane proteins within a cellular environment are crucial for all living cells. Robust methods to screen and analyse membrane protein complexes are essential to shed light on the molecular mechanism of membrane protein interactions. Most methods for detecting protein:protein interactions (PPIs) have been developed to target the interactions of soluble proteins. Bimolecular fluorescence complementation (BiFC) assays allow the formation of complexes involving PPI partners to be visualized in vivo, irrespective of whether or not these interactions are between soluble or membrane proteins. In this study, we report the development of a screening approach which utilizes BiFC and applies flow cytometry to characterize membrane protein interaction partners in the host Saccharomyces cerevisiae. These data allow constructive complexes to be discriminated with statistical confidence from random interactions and potentially allows an efficient screen for PPIs in vivo within a high-throughput setup.


Subject(s)
Membrane Proteins/metabolism , Protein Interaction Mapping/methods , Cloning, Molecular , Flow Cytometry/methods , High-Throughput Screening Assays/methods , Humans , Luminescent Proteins/chemistry , Luminescent Proteins/genetics , Membrane Proteins/chemistry , Membrane Proteins/genetics , Microscopy, Fluorescence , Protein Interaction Maps , Saccharomyces cerevisiae
4.
Article in English | MEDLINE | ID: mdl-34168058

ABSTRACT

OBJECTIVE: To determine whether distinct aquaporin-4 (AQP4)-IgG lineages play a role in neuromyelitis optica spectrum disorder (NMOSD) pathogenesis, we profiled the AQP4-IgG polyclonal serum repertoire and identified, quantified, and functionally characterized distinct AQP4-IgG lineages circulating in 2 patients with NMOSD. METHODS: We combined high-throughput sequencing and quantitative immunoproteomics to simultaneously determine the constituents of both the B-cell receptor (BCR) and the serologic (IgG) anti-AQP4 antibody repertoires in the peripheral blood of patients with NMOSD. The monoclonal antibodies identified by this platform were recombinantly expressed and functionally characterized in vitro. RESULTS: Multiple antibody lineages comprise serum AQP4-IgG repertoires. Their distribution, however, can be strikingly different in polarization (polyclonal vs pauciclonal). Among the 4 serum AQP4-IgG monoclonal antibodies we identified in 2 patients, 3 induced complement-dependent cytotoxicity in a model mammalian cell line (p < 0.01). CONCLUSIONS: The composition and polarization of AQP4-IgG antibody repertoires may play an important role in NMOSD pathogenesis and clinical presentation. Here, we present a means of coupling both cellular (BCR) and serologic (IgG) antibody repertoire analysis, which has not previously been performed in NMOSD. Our analysis could be applied in the future to clinical management of patients with NMOSD to monitor disease activity over time as well as applied to other autoimmune diseases to facilitate a deeper understanding of disease pathogenesis relative to autoantibody clones.


Subject(s)
Antibodies/blood , Aquaporin 4/blood , Neuromyelitis Optica/blood , Female , High-Throughput Nucleotide Sequencing , Humans , Male , Middle Aged , Neuromyelitis Optica/immunology , Proteomics
5.
Biochim Biophys Acta Biomembr ; 1863(9): 183650, 2021 09 01.
Article in English | MEDLINE | ID: mdl-34019902

ABSTRACT

Aquaporin water channels facilitate the bi-directional flow of water and small, neutral solutes down an osmotic gradient in all kingdoms of life. Over the last two decades, the availability of high-quality protein has underpinned progress in the structural and functional characterization of these water channels. In particular, recombinant protein technology has guaranteed the supply of aquaporin samples that were of sufficient quality and quantity for further study. Here we review the features of successful expression, purification and characterization strategies that have underpinned these successes and that will drive further breakthroughs in the field. Overall, Escherichia coli is a suitable host for prokaryotic isoforms, while Pichia pastoris is the most commonly-used recombinant host for eukaryotic variants. Generally, a two-step purification procedure is suitable after solubilization in glucopyranosides and most structures are determined by X-ray following crystallization.


Subject(s)
Aquaporins , Aquaporins/chemistry , Aquaporins/isolation & purification , Aquaporins/metabolism , Crystallography, X-Ray , Escherichia coli/chemistry , Models, Molecular , Saccharomycetales/chemistry
6.
Article in English | MEDLINE | ID: mdl-33513444

ABSTRACT

Human membrane bound O-acyltransferase domain-containing 7 (MBOAT7), also known as lysophosphatidylinositol acyltransferase 1 (LPIAT1), is an enzyme involved in the acyl-chain remodeling of phospholipids via the Lands' cycle. The MBOAT7 rs641738 variant has been associated with the entire spectrum of fatty liver disease (FLD) and neurodevelopmental disorders, but the exact enzymatic activity and the catalytic site of the protein are still unestablished. Human wild type MBOAT7 and three MBOAT7 mutants missing in the putative catalytic residues (N321A, H356A, N321A + H356A) were produced into Pichia pastoris, and purified using Ni-affinity chromatography. The enzymatic activity of MBOAT7 wild type and mutants was assessed measuring the incorporation of radiolabeled fatty acids into lipid acceptors. MBOAT7 preferentially transferred 20:4 and 20:5 polyunsaturated fatty acids (PUFAs) to lysophosphatidylinositol (LPI). On the contrary, MBOAT7 showed weak enzymatic activity for transferring saturated and unsaturated fatty acids, regardless the lipid substrate. Missense mutations in the putative catalytic residues (N321A, H356A, N321A + H356A) result in a loss of O-acyltransferase activity. Thus, MBOAT7 catalyzes the transfer of PUFAs to lipid acceptors. MBOAT7 shows the highest affinity for LPI, and missense mutations at the MBOAT7 putative catalytic dyad inhibit the O-acyltransferase activity of the protein. Our findings support the hypothesis that the association between the MBOAT7 rs641738 variant and the increased risk of NAFLD is mediated by changes in the hepatic phosphatidylinositol acyl-chain remodeling. Taken together, the increased knowledge of the enzymatic activity of MBOAT7 gives insights into the understanding on the basis of FLD.


Subject(s)
Acyltransferases/chemistry , Fatty Acids, Unsaturated/chemistry , Lysophospholipids/chemistry , Membrane Proteins/chemistry , Acyltransferases/genetics , Acyltransferases/metabolism , Amino Acid Substitution , Fatty Acids, Unsaturated/genetics , Humans , Lysophospholipids/genetics , Lysophospholipids/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Mutation, Missense , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism
7.
MethodsX ; 7: 100816, 2020.
Article in English | MEDLINE | ID: mdl-32195136

ABSTRACT

Hydrogen peroxide (H2O2) is an important signal molecule produced in animal and plant cells. The balance of H2O2 between the intra- and extracellular space is regulated by integral membrane proteins, which thereby modulate signaling. Several methods have been established to analyze aquaporin mediated transport of H2O2 in whole cells with the intrinsic limitation that the amount of protein responsible for a certain activity cannot be standardized. As a consequence, the quantification of the transport and specific activity is difficult to extract making it problematic to compare isoforms and mutated variants of one specific target. Moreover, in cell-based assays, the expression of the target protein may alter the physiological processes of the host cell providing a complication and the risk of misleading results. To improve the measurements of protein based H2O2 transport, we have developed an assay allowing quantitative measurements.•Using purified aquaporin reconstituted in proteoliposomes, transport of H2O2 can be accurately measured.•Inside the liposomes, H2O2 catalyzes the reaction between Amplex Red and horseradish peroxidase (HRP) giving rise to the fluorescent product resorufin.•Analysing pure protein provides direct biochemical evidence of a specific transport excluding putative cellular background.

8.
Biochim Biophys Acta Biomembr ; 1862(2): 183065, 2020 02 01.
Article in English | MEDLINE | ID: mdl-31521632

ABSTRACT

Aquaporins are membrane-intrinsic proteins initially defined as water (H2O) channels in all organisms and subsequently found to have multiple substrate specificities, such as hydrogen peroxide (H2O2). H2O2 is a signaling molecule that partakes in immune responses where its transport is mediated by aquaporins. To shed further light on the molecular basis of the aquaporin function in H2O2 transport, we have characterized an Arabidopsis thaliana aquaporin, AtPIP2;4, recombinantly produced to high yields in Pichia pastoris. Here, we present a newly established assay that allows detection of H2O2 transport by purified aquaporins reconstituted into liposomes, enabling us to compare aquaporin homologues with respect to substrate specificity. To get additional insight into the structural determinants for aquaporin-mediated H2O2 transport, we solved the 3D-structure of AtPIP2;4 to 3.7 Šresolution and found structural identity to the water channel from spinach (SoPIP2;1), with the difference that Cd2+ cation is not required to retain the closed conformation. The transport specificities of the two plant aquaporins were compared to a human homologue, AQP1. Overall, we conclude that AtPIP2;4, SoPIP2;1 and hAQP1 are all transporters of both H2O and H2O2, but have different efficiencies for various specificities. Notably, all three homologues expedite H2O transport equally well while the plant aquaporins are more permeable to H2O2 than hAQP1. Comparison of the structures indicates that the observed variations in H2O and H2O2 transport cannot be explained by differences in the monomeric pore. Possibly, the determinants for transport specificities reside in the flexible domains outside the membrane core of these channels.


Subject(s)
Aquaporins/metabolism , Arabidopsis Proteins/chemistry , Hydrogen Peroxide/metabolism , Aquaporin 1/metabolism , Aquaporins/chemistry , Arabidopsis , Arabidopsis Proteins/metabolism , Biological Transport , Crystallography, X-Ray , Humans , Liposomes , Molecular Conformation , Plant Proteins , Spinacia oleracea , Water/metabolism
9.
Int J Mol Sci ; 19(3)2018 Feb 25.
Article in English | MEDLINE | ID: mdl-29495336

ABSTRACT

The human plasma membrane transporter ASCT2 is responsible for mediating Na- dependent antiport of neutral amino acids. New insights into structure/function relationships were unveiled by a combined approach of recombinant over-expression, site-directed mutagenesis, transport assays in proteoliposomes and bioinformatics. WT and Cys mutants of hASCT2 were produced in P. pastoris and purified for functional assay. The reactivity towards SH reducing and oxidizing agents of WT protein was investigated and opposite effects were revealed; transport activity increased upon treatment with the Cys reducing agent DTE, i.e., when Cys residues were in thiol (reduced) state. Methyl-Hg, which binds to SH groups, was able to inhibit WT and seven out of eight Cys to Ala mutants. On the contrary, C467A loses the sensitivity to both DTE activation and Methyl-Hg inhibition. The C467A mutant showed a Km for Gln one order of magnitude higher than that of WT. Moreover, the C467 residue is localized in the substrate binding region of the protein, as suggested by bioinformatics on the basis of the EAAT1 structure comparison. Taken together, the experimental data allowed identifying C467 residue as crucial for substrate binding and for transport activity modulation of hASCT2.


Subject(s)
Amino Acid Transport System ASC/chemistry , Amino Acid Transport System ASC/genetics , Cysteine/genetics , Minor Histocompatibility Antigens/chemistry , Minor Histocompatibility Antigens/genetics , Mutagenesis, Site-Directed , Amino Acid Transport System ASC/metabolism , Biological Transport/drug effects , Disulfides/chemistry , Energy Metabolism , Glutamine/metabolism , Glutamine/pharmacology , Humans , Kinetics , Minor Histocompatibility Antigens/metabolism , Models, Molecular , Oxidation-Reduction , Protein Conformation , Structure-Activity Relationship , Substrate Specificity
10.
PLoS One ; 12(7): e0181192, 2017.
Article in English | MEDLINE | ID: mdl-28715506

ABSTRACT

Barnacles are sessile macro-invertebrates, found along rocky shores in coastal areas worldwide. The euryhaline bay barnacle Balanus improvisus (Darwin, 1854) (= Amphibalanus improvisus) can tolerate a wide range of salinities, but the molecular mechanisms underlying the osmoregulatory capacity of this truly brackish species are not well understood. Aquaporins are pore-forming integral membrane proteins that facilitate transport of water, small solutes and ions through cellular membranes, and that have been shown to be important for osmoregulation in many organisms. The knowledge of the function of aquaporins in crustaceans is, however, limited and nothing is known about them in barnacles. We here present the repertoire of aquaporins from a thecostracan crustacean, the barnacle B. improvisus, based on genome and transcriptome sequencing. Our analyses reveal that B. improvisus contains eight genes for aquaporins. Phylogenetic analysis showed that they represented members of the classical water aquaporins (Aqp1, Aqp2), the aquaglyceroporins (Glp1, Glp2), the unorthodox aquaporin (Aqp12) and the arthropod-specific big brain aquaporin (Bib). Interestingly, we also found two big brain-like proteins (BibL1 and BibL2) constituting a new group of aquaporins not yet described in arthropods. In addition, we found that the two water-specific aquaporins were expressed as C-terminal splice variants. Heterologous expression of some of the aquaporins followed by functional characterization showed that Aqp1 transported water and Glp2 water and glycerol, agreeing with the predictions of substrate specificity based on 3D modeling and phylogeny. To investigate a possible role for the B. improvisus aquaporins in osmoregulation, mRNA expression changes in adult barnacles were analysed after long-term acclimation to different salinities. The most pronounced expression difference was seen for AQP1 with a substantial (>100-fold) decrease in the mantle tissue in low salinity (3 PSU) compared to high salinity (33 PSU). Our study provides a base for future mechanistic studies on the role of aquaporins in osmoregulation.


Subject(s)
Aquaporins/metabolism , Osmoregulation/physiology , Salinity , Thoracica/metabolism , Alternative Splicing , Animals , Aquaporins/genetics , Exons , Gene Expression Regulation , Genome , Glycerol/metabolism , Introns , Models, Molecular , Osmoregulation/genetics , Phylogeny , RNA, Messenger/metabolism , Sequence Analysis, DNA , Sequence Analysis, Protein , Sequence Homology, Amino Acid , Thoracica/genetics , Thoracica/growth & development , Transcriptome , Water/metabolism
11.
Nano Lett ; 17(1): 476-485, 2017 01 11.
Article in English | MEDLINE | ID: mdl-28073257

ABSTRACT

Proteins are key components in a multitude of biological processes, of which the functions carried out by transmembrane (membrane-spanning) proteins are especially demanding for investigations. This is because this class of protein needs to be incorporated into a lipid bilayer representing its native environment, and in addition, many experimental conditions also require a solid support for stabilization and analytical purposes. The solid support substrate may, however, limit the protein functionality due to protein-material interactions and a lack of physical space. We have in this work tailored the pore size and pore ordering of a mesoporous silica thin film to match the native cell-membrane arrangement of the transmembrane protein human aquaporin 4 (hAQP4). Using neutron reflectivity (NR), we provide evidence of how substrate pores host the bulky water-soluble domain of hAQP4, which is shown to extend 7.2 nm into the pores of the substrate. Complementary surface analytical tools, including quartz crystal microbalance with dissipation monitoring (QCM-D) and fluorescence microscopy, revealed successful protein-containing supported lipid bilayer (pSLB) formation on mesoporous silica substrates, whereas pSLB formation was hampered on nonporous silica. Additionally, electron microscopy (TEM and SEM), light scattering (DLS and stopped-flow), and small-angle X-ray scattering (SAXS) were employed to provide a comprehensive characterization of this novel hybrid organic-inorganic interface, the tailoring of which is likely to be generally applicable to improve the function and stability of a broad range of membrane proteins containing water-soluble domains.


Subject(s)
Aquaporin 4/chemistry , Lipid Bilayers/chemistry , Nanostructures/chemistry , Silicon Dioxide/chemistry , Humans , Particle Size , Porosity
12.
Protein Sci ; 25(12): 2196-2208, 2016 12.
Article in English | MEDLINE | ID: mdl-27643892

ABSTRACT

Protein:protein interactions play key functional roles in the molecular machinery of the cell. A major challenge for structural biology is to gain high-resolution structural insight into how membrane protein function is regulated by protein:protein interactions. To this end we present a method to express, detect, and purify stable membrane protein complexes that are suitable for further structural characterization. Our approach utilizes bimolecular fluorescence complementation (BiFC), whereby each protein of an interaction pair is fused to nonfluorescent fragments of yellow fluorescent protein (YFP) that combine and mature as the complex is formed. YFP thus facilitates the visualization of protein:protein interactions in vivo, stabilizes the assembled complex, and provides a fluorescent marker during purification. This technique is validated by observing the formation of stable homotetramers of human aquaporin 0 (AQP0). The method's broader applicability is demonstrated by visualizing the interactions of AQP0 and human aquaporin 1 (AQP1) with the cytoplasmic regulatory protein calmodulin (CaM). The dependence of the AQP0-CaM complex on the AQP0 C-terminus is also demonstrated since the C-terminal truncated construct provides a negative control. This screening approach may therefore facilitate the production and purification of membrane protein:protein complexes for later structural studies by X-ray crystallography or single particle electron microscopy.


Subject(s)
Aquaporin 1 , Aquaporins , Bacterial Proteins , Calmodulin , Eye Proteins , Genetic Complementation Test , Luminescent Proteins , Saccharomyces cerevisiae/metabolism , Aquaporin 1/biosynthesis , Aquaporin 1/chemistry , Aquaporin 1/genetics , Aquaporin 1/isolation & purification , Aquaporins/biosynthesis , Aquaporins/chemistry , Aquaporins/genetics , Aquaporins/isolation & purification , Bacterial Proteins/biosynthesis , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Calmodulin/biosynthesis , Calmodulin/chemistry , Calmodulin/genetics , Calmodulin/isolation & purification , Eye Proteins/biosynthesis , Eye Proteins/chemistry , Eye Proteins/genetics , Eye Proteins/isolation & purification , Humans , Luminescent Proteins/biosynthesis , Luminescent Proteins/chemistry , Luminescent Proteins/genetics , Luminescent Proteins/isolation & purification , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Saccharomyces cerevisiae/genetics
13.
PLoS One ; 10(11): e0143027, 2015.
Article in English | MEDLINE | ID: mdl-26569106

ABSTRACT

Aquaporin membrane protein channels mediate cellular water flow. Human aquaporin 5 (AQP5) is highly expressed in the respiratory system and secretory glands where it facilitates the osmotically-driven generation of pulmonary secretions, saliva, sweat and tears. Dysfunctional trafficking of AQP5 has been implicated in several human disease states, including Sjögren's syndrome, bronchitis and cystic fibrosis. In order to investigate how the plasma membrane expression levels of AQP5 are regulated, we studied real-time translocation of GFP-tagged AQP5 in HEK293 cells. We show that AQP5 plasma membrane abundance in transfected HEK293 cells is rapidly and reversibly regulated by at least three independent mechanisms involving phosphorylation at Ser156, protein kinase A activity and extracellular tonicity. The crystal structure of a Ser156 phosphomimetic mutant indicates that its involvement in regulating AQP5 membrane abundance is not mediated by a conformational change of the carboxy-terminus. We suggest that together these pathways regulate cellular water flow.


Subject(s)
Aquaporin 5/metabolism , Cell Membrane/metabolism , Signal Transduction , Aquaporin 5/chemistry , Cell Membrane/drug effects , Crystallography, X-Ray , Cyclic AMP-Dependent Protein Kinases/antagonists & inhibitors , Cyclic AMP-Dependent Protein Kinases/metabolism , HEK293 Cells , Humans , Hypotonic Solutions/pharmacology , Models, Molecular , Mutant Proteins/chemistry , Mutant Proteins/metabolism , Mutation/genetics , Phosphorylation/drug effects , Protein Kinase Inhibitors/pharmacology , Protein Structure, Secondary , Protein Transport/drug effects , Serine/genetics , Signal Transduction/drug effects
14.
FEBS Lett ; 589(23): 3617-23, 2015 Nov 30.
Article in English | MEDLINE | ID: mdl-26492990

ABSTRACT

The Alanine Serine Cysteine Transporter 2 (ASCT2) is involved in balancing the intracellular amino acid pool. This function is allowed by the antiport mechanism and the asymmetric specificity towards different neutral amino acids, distinctive of this transporter. In the present work, the interaction of the putative substrate Cys with the human ASCT2 has been studied using the recombinant hASCT2 over-produced in Pichia pastoris and the native ASCT2 extracted from HeLa in both proteoliposomes and intact cells. It was found that Cys is a potent competitive inhibitor of hASCT2 but is not a substrate. Moreover, Cys binding to a second site, different from that of substrate, triggers a protein-mediated unidirectional Gln efflux.


Subject(s)
Amino Acid Transport System ASC/antagonists & inhibitors , Amino Acid Transport System ASC/metabolism , Cysteine/pharmacology , Biological Transport , Cysteine/metabolism , Extracellular Space/drug effects , Extracellular Space/metabolism , HeLa Cells , Humans , Intracellular Space/drug effects , Intracellular Space/metabolism , Minor Histocompatibility Antigens , Proteolipids/metabolism , Recombinant Proteins/metabolism
15.
FASEB J ; 29(5): 1780-93, 2015 May.
Article in English | MEDLINE | ID: mdl-25609423

ABSTRACT

Here we ask the following: 1) what is the CO2 permeability (Pco2) of unilamellar liposomes composed of l-α-phosphatidylcholine (PC)/l-α-phosphatidylserine (PS) = 4:1 and containing cholesterol (Chol) at levels often occurring in biologic membranes (50 mol%), and 2) does incorporation of the CO2 channel aquaporin (AQP)1 cause a significant increase in membrane Pco2? Presently, a drastic discrepancy exists between the answers to these two questions obtained from mass-spectrometric (18)O-exchange measurements (Chol reduces Pco2 100-fold, AQP1 increases Pco2 10-fold) vs. from stopped-flow approaches observing CO2 uptake (no effects of either Chol or AQP1). A novel theory of CO2 uptake by vesicles predicts that in a stopped-flow apparatus this fast process can only be resolved temporally and interpreted quantitatively, if 1) a very low CO2 partial pressure (pCO2) is used (e.g., 18 mmHg), and 2) intravesicular carbonic anhydrase (CA) activity is precisely known. With these prerequisites fulfilled, we find by stopped-flow that 1) Chol-containing vesicles possess a Pco2 = 0.01cm/s, and Chol-free vesicles exhibit ∼1 cm/s, and 2) the Pco2 of 0.01 cm/s is increased ≥ 10-fold by AQP1. Both results agree with previous mass-spectrometric results and thus resolve the apparent discrepancy between the two techniques. We confirm that biologic membranes have an intrinsically low Pco2 that can be raised when functionally necessary by incorporating protein-gas channels such as AQP1.


Subject(s)
Aquaporin 1/metabolism , Carbon Dioxide/metabolism , Cell Membrane Permeability , Cholesterol/metabolism , Liposomes/metabolism , Phosphatidylcholines/metabolism , Spectrometry, Fluorescence/methods , Humans , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
16.
Amino Acids ; 46(11): 2463-75, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25052780

ABSTRACT

The kinetic mechanism of the transport catalyzed by the human glutamine/neutral amino acid transporter hASCT2 over-expressed in P. pastoris was determined in proteoliposomes by pseudo-bi-substrate kinetic analysis of the Na(+)-glutamineex/glutaminein transport reaction. A random simultaneous mechanism resulted from the experimental analysis. Purified functional hASCT2 was chemically cross-linked to a stable dimeric form. The oligomeric structure correlated well with the kinetic mechanism of transport. Half-saturation constants (Km) of the transporter for the other substrates Ala, Ser, Asn and Thr were measured both on the external and internal side. External Km were much lower than the internal ones confirming the asymmetry of the transporter. The electric nature of the transport reaction was determined imposing a negative inside membrane potential generated by K(+) gradients in the presence of valinomycin. The transport reaction resulted to be electrogenic and the electrogenicity originated from external Na(+). Internal Na(+) exerted a stimulatory effect on the transport activity which could be explained by a regulatory, not a counter-transport, effect. Native and deglycosylated hASCT2 extracted from HeLa showed the same transport features demonstrating that the glycosyl moiety has no role in transport function. Both in vitro and in vivo interactions of hASCT2 with the scaffold protein PDZK1 were revealed.


Subject(s)
Amino Acid Transport System ASC/metabolism , Amino Acids/chemistry , Gene Expression Regulation , Animals , Biological Transport , Carrier Proteins/metabolism , Cross-Linking Reagents/chemistry , Electrochemistry , Glutamine/chemistry , HeLa Cells , Humans , Kinetics , Liposomes/chemistry , Membrane Proteins , Minor Histocompatibility Antigens , Pichia/metabolism , Potassium/chemistry , Rats , Recombinant Proteins/metabolism , Sodium/chemistry , Valinomycin/chemistry
17.
Proc Natl Acad Sci U S A ; 111(17): 6305-10, 2014 Apr 29.
Article in English | MEDLINE | ID: mdl-24733887

ABSTRACT

Human aquaporin 2 (AQP2) is a water channel found in the kidney collecting duct, where it plays a key role in concentrating urine. Water reabsorption is regulated by AQP2 trafficking between intracellular storage vesicles and the apical membrane. This process is tightly controlled by the pituitary hormone arginine vasopressin and defective trafficking results in nephrogenic diabetes insipidus (NDI). Here we present the X-ray structure of human AQP2 at 2.75 Å resolution. The C terminus of AQP2 displays multiple conformations with the C-terminal α-helix of one protomer interacting with the cytoplasmic surface of a symmetry-related AQP2 molecule, suggesting potential protein-protein interactions involved in cellular sorting of AQP2. Two Cd(2+)-ion binding sites are observed within the AQP2 tetramer, inducing a rearrangement of loop D, which facilitates this interaction. The locations of several NDI-causing mutations can be observed in the AQP2 structure, primarily situated within transmembrane domains and the majority of which cause misfolding and ER retention. These observations provide a framework for understanding why mutations in AQP2 cause NDI as well as structural insights into AQP2 interactions that may govern its trafficking.


Subject(s)
Aquaporin 2/chemistry , Aquaporin 2/metabolism , Diabetes Insipidus, Nephrogenic/metabolism , Aquaporin 2/genetics , Binding Sites , Cadmium/metabolism , Calcium/metabolism , Crystallography, X-Ray , Endoplasmic Reticulum/metabolism , Endosomal Sorting Complexes Required for Transport/metabolism , Humans , Models, Molecular , Oocytes/metabolism , Protein Structure, Secondary , Protein Transport
18.
Hum Mol Genet ; 23(15): 4077-85, 2014 Aug 01.
Article in English | MEDLINE | ID: mdl-24670599

ABSTRACT

Retinoids are micronutrients that are stored as retinyl esters in the retina and hepatic stellate cells (HSCs). HSCs are key players in fibrogenesis in chronic liver diseases. The enzyme responsible for hydrolysis and release of retinyl esters from HSCs is unknown and the relationship between retinoid metabolism and liver disease remains unclear. We hypothesize that the patatin-like phospholipase domain-containing 3 (PNPLA3) protein is involved in retinol metabolism in HSCs. We tested our hypothesis both in primary human HSCs and in a human cohort of subjects with non-alcoholic fatty liver disease (N = 146). Here we show that PNPLA3 is highly expressed in human HSCs. Its expression is regulated by retinol availability and insulin, and increased PNPLA3 expression results in reduced lipid droplet content. PNPLA3 promotes extracellular release of retinol from HSCs in response to insulin. We also show that purified wild-type PNPLA3 hydrolyzes retinyl palmitate into retinol and palmitic acid. Conversely, this enzymatic activity is markedly reduced with purified PNPLA3 148M, a common mutation robustly associated with liver fibrosis and hepatocellular carcinoma development. We also find the PNPLA3 I148M genotype to be an independent (P = 0.009 in a multivariate analysis) determinant of circulating retinol-binding protein 4, a reliable proxy for retinol levels in humans. This study identifies PNPLA3 as a lipase responsible for retinyl-palmitate hydrolysis in HSCs in humans. Importantly, this indicates a potential novel link between HSCs, retinoid metabolism and PNPLA3 in determining the susceptibility to chronic liver disease.


Subject(s)
Hepatic Stellate Cells/enzymology , Lipase/genetics , Membrane Proteins/genetics , Non-alcoholic Fatty Liver Disease/enzymology , Vitamin A/analogs & derivatives , Adult , Diterpenes , Female , Gene Expression Regulation , Hep G2 Cells , Hepatic Stellate Cells/cytology , Hepatic Stellate Cells/drug effects , Humans , Insulin/metabolism , Insulin/pharmacology , Lipase/metabolism , Lipid Droplets/metabolism , Male , Membrane Proteins/metabolism , Middle Aged , Mutation , Non-alcoholic Fatty Liver Disease/genetics , Non-alcoholic Fatty Liver Disease/pathology , Palmitic Acid/metabolism , Primary Cell Culture , Retinol-Binding Proteins, Plasma/genetics , Retinol-Binding Proteins, Plasma/metabolism , Retinyl Esters , Vitamin A/metabolism
19.
Biochim Biophys Acta ; 1840(5): 1614-23, 2014 May.
Article in English | MEDLINE | ID: mdl-24252279

ABSTRACT

BACKGROUND: Insight into protein-protein interactions (PPIs) is highly desirable in order to understand the physiology of cellular events. This understanding is one of the challenges in biochemistry and molecular biology today, especially for eukaryotic membrane proteins where hurdles of production, purification and structural determination must be passed. SCOPE OF REVIEW: We have explored the common strategies used to find medically relevant interaction partners of aquaporins (AQPs). The most frequently used methods to detect direct contact, yeast two-hybrid interaction assay and co-precipitation, are described together with interactions specifically found for the selected targets AQP0, AQP2, AQP4 and AQP5. MAJOR CONCLUSIONS: The vast majority of interactions involve the aquaporin C-terminus and the characteristics of the interaction partners are strikingly diverse. While the well-established methods for PPIs are robust, a novel approach like bimolecular fluorescence complementation (BiFC) is attractive for screening many conditions as well as transient interactions. The ultimate goal is structural evaluation of protein complexes in order to get mechanistic insight into how proteins communicate at a molecular level. GENERAL SIGNIFICANCE: What we learn from the human aquaporin field in terms of method development and communication between proteins can be of major use for any integral membrane protein of eukaryotic origin. This article is part of a Special Issue entitled Aquaporins.


Subject(s)
Aquaporins/metabolism , Aquaporins/chemistry , Protein Binding
20.
Biochim Biophys Acta ; 1841(4): 574-80, 2014 Apr 04.
Article in English | MEDLINE | ID: mdl-24369119

ABSTRACT

The patatin-like phospholipase domain containing 3 (PNPLA3, also called adiponutrin, ADPN) is a membrane-bound protein highly expressed in the liver. The genetic variant I148M (rs738409) was found to be associated with progression of chronic liver disease. We aimed to establish a protein purification protocol in a yeast system (Pichia pastoris) and to examine the human PNPLA3 enzymatic activity, substrate specificity and the I148M mutation effect. hPNPLA3 148I wild type and 148M mutant cDNA were cloned into P. pastoris expression vectors. Yeast cells were grown in 3L fermentors. PNPLA3 protein was purified from membrane fractions by Ni-affinity chromatography. Enzymatic activity was assessed using radiolabeled substrates. Both 148I wild type and 148M mutant proteins are localized to the membrane. The wild type protein shows a predominant lipase activity with mild lysophosphatidic acid acyl transferase activity (LPAAT) and the I148M mutation results in a loss of function of both these activities. Our data show that PNPLA3 has a predominant lipase activity and I148M mutation results in a loss of function.


Subject(s)
Hydrolases/metabolism , Lipase/metabolism , Membrane Proteins/genetics , Recombinant Proteins/genetics , Cloning, Molecular , Humans , Hydrolases/genetics , Lipase/biosynthesis , Lipase/genetics , Lipase/isolation & purification , Liver/enzymology , Liver/pathology , Membrane Proteins/biosynthesis , Membrane Proteins/isolation & purification , Mutation , Pichia , Recombinant Proteins/biosynthesis , Recombinant Proteins/isolation & purification , Triglycerides/metabolism
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