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1.
Phys Rev Lett ; 93(17): 170802, 2004 Oct 22.
Article in English | MEDLINE | ID: mdl-15525062

ABSTRACT

We have directly observed reversal of the polarity of charged surfaces in water upon the addition of trivalent and quadrivalent ions using atomic force microscopy. The bulk concentration of multivalent ions at which charge inversion reversibly occurs depends only very weakly on the chemical composition, surface structure, size, and lipophilicity of the ions, but is very sensitive to their valence. These results support the theoretical proposal that spatial correlations between ions are the driving mechanism behind charge inversion.


Subject(s)
Metals/chemistry , Polylysine/chemistry , Silicon Dioxide/chemistry , Cobalt/chemistry , Cyanides/chemistry , Ferricyanides/chemistry , Ferrous Compounds/chemistry , Ions/chemistry , Iron Compounds/chemistry , Lanthanoid Series Elements/chemistry , Microscopy, Atomic Force , Organometallic Compounds/chemistry , Static Electricity
2.
Biopolymers ; 62(5): 261-7, 2001.
Article in English | MEDLINE | ID: mdl-11745121

ABSTRACT

Aromatic substrate binding to peroxidases is mediated through hydrophobic and hydrogen bonding interactions between residues on the distal side of the heme and the substrate molecule. The effects of perturbing these interactions are investigated by an electronic absorption and resonance Raman study of benzohydroxamic acid (BHA) binding to a series of mutants of horseradish peroxidase isoenzyme C (HRPC). In particular, the Phe179 --> Ala, His42 --> Glu variants and the double mutant His42 --> Glu:Arg38 --> Leu are studied in their ferric state at pH 7 with and without BHA. A comparison of the data with those previously reported for wild-type HRPC and other distal site mutants reaffirms that in the resting state mutation of His42 leads to an increase of 6-coordinate aquo heme forms at the expense of the 5-coordinate heme state, which is the dominant species in wild-type HRPC. The His42Glu:Arg38Leu double mutant displays an enhanced proportion of the pentacoordinate heme state, similar to the single Arg38Leu mutant. The heme spin states are insensitive to mutation of the Phe179 residue. The BHA complexes of all mutants are found to have a greater amount of unbound form compared to the wild-type HRPC complex. It is apparent from the spectral changes induced on complexation with BHA that, although Phe179 provides an important hydrophobic interaction with BHA, the hydrogen bonds formed between His42 and, in particular, Arg38 and BHA assume a more critical role in the binding of BHA to the resting state.


Subject(s)
Horseradish Peroxidase/metabolism , Hydroxamic Acids/metabolism , Mutation , Amino Acid Substitution , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/genetics , Hydroxamic Acids/chemistry , Isoenzymes/chemistry , Isoenzymes/genetics , Isoenzymes/metabolism , Mutagenesis, Site-Directed , Protein Binding/genetics , Spectrum Analysis, Raman
3.
Biochemistry ; 40(34): 10360-70, 2001 Aug 28.
Article in English | MEDLINE | ID: mdl-11513615

ABSTRACT

The novel class III ascorbate peroxidase isoenzyme II from tea leaves (TcAPXII), with an unusually high specific ascorbate peroxidase activity associated with stress response, has been characterized by resonance Raman (RR), electronic absorption, and Fourier transform infrared (FT-IR) spectroscopies. Ferric and ferrous forms and the complexes with fluoride, cyanide, and CO have been studied at various pH values. The overall blue shift of the electronic absorption spectrum, the high RR frequencies of the core size marker bands, similar to those of 6-coordinate low-spin heme, and the complex RR spectrum in the low-frequency region of ferric TcAPXII indicate that this protein contains an unusual 5-coordinate quantum mechanically mixed-spin heme. The spectra of both the fluoride and the CO adducts suggest that these exogenous ligands are strongly hydrogen-bonded with a residue that appears to be unique to this peroxidase. Electronic absorption spectra also emphasize structural differences between the benzhydroxamic acid binding sites of TcAPXII and horseradish peroxidases (HRPC). It is concluded that TcAPXII is a paradigm peroxidase since it is the first example of a hybrid enzyme that combines spectroscopic signatures, structural elements, and substrate specificities previously reported only for distinct class I and class III peroxidases.


Subject(s)
Heme/metabolism , Peroxidases/chemistry , Peroxidases/metabolism , Tea/enzymology , Ascorbate Peroxidases , Binding Sites , Carbon Monoxide/metabolism , Cyanides/metabolism , Ferric Compounds/metabolism , Ferrous Compounds/metabolism , Fluorides/metabolism , Heme/chemistry , Hydrogen Bonding , Hydrogen-Ion Concentration , Isoenzymes/chemistry , Isoenzymes/metabolism , Kinetics , Plant Leaves/enzymology , Quantum Theory , Spectrophotometry , Spectroscopy, Fourier Transform Infrared , Spectrum Analysis, Raman
4.
Faraday Discuss ; (116): 191-203; discussion 257-68, 2000.
Article in English | MEDLINE | ID: mdl-11197478

ABSTRACT

A wealth of information on the reactions of redox-active sites in proteins can be obtained by voltammetric studies in which the protein sample is arranged as a layer on an electrode surface. By carrying out cyclic voltammetry over a wide range of scan rates and exploiting the ability to poise or pulse the electrode potential between cycles, data are obtained that are conveniently (albeit simplistically) analysed in terms of plots of peak potentials against scan rate. A simple reversible electron-transfer process gives rise to a 'trumpet'-shaped plot because the oxidation and reduction peaks separate increasingly at high scan rate; the electrochemical kinetics are then determined by fitting to Butler-Volmer or Marcus models. Much more interesting though are the ways in which this 'trumpet plot' is altered, often dramatically, when electron transfer is coupled to biologically important processes such as proton transfer, ligand exchange, or a change in conformation. It is then possible to derive particularly detailed information on the kinetics, energetics and mechanism of reactions that may not revealed clearly or even at all by other methods. In order to interpret the voltammetry of coupled systems, it is important to be able to define 'ideal behaviour' for systems that are expected to show simple and uncoupled electron transfer. Accordingly, this paper describes results we have obtained for several proteins that are expected to show such behaviour, and compares these results with theoretical predictions.


Subject(s)
Electron Transport , Electrochemistry , Kinetics , Oxidation-Reduction , Thermodynamics
5.
Biochemistry ; 38(28): 8992-9, 1999 Jul 13.
Article in English | MEDLINE | ID: mdl-10413472

ABSTRACT

The nickel-iron hydrogenase from Chromatium vinosum adsorbs at a pyrolytic graphite edge-plane (PGE) electrode and catalyzes rapid interconversion of H(+)((aq)) and H(2) at potentials expected for the half-cell reaction 2H(+) right arrow over left arrow H(2), i.e., without the need for overpotentials. The voltammetry mirrors characteristics determined by conventional methods, while affording the capabilities for exquisite control and measurement of potential-dependent activities and substrate-product mass transport. Oxidation of H(2) is extremely rapid; at 10% partial pressure H(2), mass transport control persists even at the highest electrode rotation rates. The turnover number for H(2) oxidation lies in the range of 1500-9000 s(-)(1) at 30 degrees C (pH 5-8), which is significantly higher than that observed using methylene blue as the electron acceptor. By contrast, proton reduction is slower and controlled by processes occurring in the enzyme. Carbon monoxide, which binds reversibly to the NiFe site in the active form, inhibits electrocatalysis and allows improved definition of signals that can be attributed to the reversible (non-turnover) oxidation and reduction of redox centers. One signal, at -30 mV vs SHE (pH 7.0, 30 degrees C), is assigned to the [3Fe-4S](+/0) cluster on the basis of potentiometric measurements. The second, at -301 mV and having a 1. 5-2.5-fold greater amplitude, is tentatively assigned to the two [4Fe-4S](2+/+) clusters with similar reduction potentials. No other redox couples are observed, suggesting that these two sets of centers are the only ones in CO-inhibited hydrogenase capable of undergoing simple rapid cycling of their redox states. With the buried NiFe active site very unlikely to undergo direct electron exchange with the electrode, at least one and more likely each of the three iron-sulfur clusters must serve as relay sites. The fact that H(2) oxidation is rapid even at potentials nearly 300 mV more negative than the reduction potential of the [3Fe-4S](+/0) cluster shows that its singularly high equilibrium reduction potential does not compromise catalytic efficiency.


Subject(s)
Chromatium/enzymology , Hydrogen/chemistry , Hydrogenase/chemistry , Protons , Bacterial Proteins/chemistry , Carbon , Catalysis , Chromatium/growth & development , Diffusion , Electrochemistry/methods , Electrodes , Electron Transport , Nitrogen/chemistry , Oxidation-Reduction , Substrate Specificity
6.
Biochemistry ; 38(11): 3302-9, 1999 Mar 16.
Article in English | MEDLINE | ID: mdl-10079073

ABSTRACT

The thermodynamic and catalytic properties of flavocytochrome c3 from Shewanella frigidimarina have been studied using a combination of protein film voltammetry and solution methods. As measured by solution kinetics, maximum catalytic efficiencies for fumarate reduction (kcat/Km = 2.1 x 10(7) M-1 s-1 at pH 7.2) and succinate oxidation (kcat/Km = 933 M-1 s-1 at pH 8.5) confirm that flavocytochrome c3 is a unidirectional fumarate reductase. Very similar catalytic properties are observed for the enzyme adsorbed to monolayer coverage at a pyrolytic graphite "edge" electrode, thus confirming the validity of the electrochemical method for providing complementary information. In the absence of fumarate, the adsorbed enzyme displays a complex envelope of reversible redox signals which can be deconvoluted to yield the contributions from each active site. Importantly, the envelope is dominated by the two-electron signal due to FAD [E degrees ' = -152 mV vs the standard hydrogen electrode (SHE) at pH 7.0 and 24 degrees C] which enables quantitative examination of this center, the visible spectrum of which is otherwise masked by the intense absorption bands due to the hemes. The FAD behaves as a cooperative two-electron center with a pH-dependent reduction potential that is modulated (pKox at 6.5) by ionization of a nearby residue. In conjunction with the kinetic pKa values determined for the forward and reverse reactions (7.4 and 8.6, respectively), a mechanism for fumarate reduction, incorporating His365 and an anionic form of reduced FAD, is proposed. The reduction potentials of the four heme groups, estimated by analysis of the underlying envelope, are -102, -146, -196, and -238 mV versus the SHE at pH 7.0 and 24 degrees C and are comparable to those determined by redox potentiometry.


Subject(s)
Cytochrome c Group/chemistry , Cytochrome c Group/metabolism , Gram-Negative Facultatively Anaerobic Rods/enzymology , Succinate Dehydrogenase/chemistry , Succinate Dehydrogenase/metabolism , Catalysis , Electrochemistry , Electron Transport , Hydrogen-Ion Concentration , Kinetics , Mathematical Computing , Oxidation-Reduction , Spectrophotometry, Ultraviolet , Thermodynamics
7.
Anal Chem ; 71(1): 174-82, 1999 Jan 01.
Article in English | MEDLINE | ID: mdl-21662940

ABSTRACT

Staircase cyclic voltammetry (SCV) is the digital counterpart of analog cyclic voltammetry (CV). However, when the redox-active species is adsorbed at the electrode surface, the voltammetric peak shapes (width, height, area, and to a lesser extent the reduction potentials) obtained with SCV can be very different from those of CV, even when small potential steps are used. Like analog CV, SCV provides a straightforward method to estimate and subtract the background and charging currents from the desired Faradaic current, while the pulsed nature of SCV provides the time-dependent decay of the Faradaic current, similar to chronoamperometry. Thus, electron-transfer rate constants can be directly measured as a function of applied potential, and no a priori model is required. An SCV equivalent of the square wave "quasi-reversible maximum" of observed peak height versus sampling moment and step size is predicted. The SCV response can only become independent of potential step size and similar to CV at high scan rates (ν > 10 k(0)E(step)), if the current is sampled at half the step interval. The applicability of SCV to studies of redox centers in proteins is illustrated for the two-electron oxidation/reduction of yeast cytochrome c peroxidase, adsorbed at a pyrolytic graphite edge-plane electrode.

8.
Eur J Biochem ; 235(1-2): 167-72, 1996 Jan 15.
Article in English | MEDLINE | ID: mdl-8631324

ABSTRACT

This study deals with the detailed electrochemistry and complete EPR-monitored titrations of flavodoxin II of Azotobacter vinelandii (ATCC 478). Since wild-type flavodoxin dimerises via intermolecular disulphide bond formation between Cys69 residues, Cys69 has been replaced by both an alanine and a serine residue. Redox properties of the C69A and C69S flavodoxin mutants were compared to those of wild-type flavodoxin. In the presence of the promotor neomycin, C69A and C69S flavodoxin showed a reversible response of the semiquinone/hydroquinone couple at the glassy carbon electrode. However, the addition of dithiothreitol proved to be necessary for the stabilisation of the wild-type flavodoxin response. EPR-monitored redox titrations of wild-type and C69A flavodoxin at high and low pH confirmed the redox potentials measured using cyclic voltammetry. The pH dependence of the semiquinone/hydroquinone redox potentials cannot be described using a model assuming one redox-linked pK. Instead, the presence of at least two redox-linked protonation sites is suggested: pKred.1 = 5.39 +/- 0.08, pKox = 7.29 +/- 0.14, and pKred.2 = 7.84 +/- 0.14 with Em.7 = -459 +/- 4 mV, and a constant redox potential at high pH of -485 +/- 4 mV. The dependence of the semiquinone/hydroquinone redox potential on temperature is -0.5 +/- 0.1 mV . K(-1), yielding delta H degrees = 28.6 +/- 1.5 kJ . mol(1) and delta S degrees = -50.0 +/- 6.2 J . mol(-1) . K(-1). No significant differences in redox properties of wild-type, C69A, and C69S flavodoxin were observed. The electrochemical data suggest that replacement of Cys69 in the vicinity of the FMN by either an alanine or a serine residue does not alter the dielectric properties and structure of A. vinelandii flavodoxin II.


Subject(s)
Azotobacter vinelandii/metabolism , Flavodoxin/chemistry , Flavodoxin/metabolism , Azotobacter vinelandii/genetics , Electrochemistry , Electron Spin Resonance Spectroscopy , Escherichia coli/genetics , Flavodoxin/genetics , Hydrogen-Ion Concentration , Kinetics , Models, Chemical , Molecular Structure , Oxidation-Reduction , Point Mutation
9.
Biochemistry ; 34(45): 14675-86, 1995 Nov 14.
Article in English | MEDLINE | ID: mdl-7578075

ABSTRACT

We have investigated the HiPIPs from Ectothiorhodospira vacuolata (iso-1 and iso-2), Chromatium vinosum, Rhodocyclus gelatinosus, Rhodocyclus tenuis (strain 2761), Rhodopila globiformis, and Rhodospirillum salinarum (iso-2) by direct electrochemistry. Using a glassy carbon electrode with a negatively charged surface, direct, unpromoted electrochemistry is possible with the positively charged HiPIPs. With the negatively charged HiPIPs, the positively charged and flexible bridging promoter poly(L-lysine) is required. The stability of the response can be improved by morpholin, aspartate, tryptophan, or 4,4'-dipyridyl. These "stabilizers" prevent the blocking of the electrode by denatured protein. The redox potential of 500 mV found for R. salinarum iso-2 is the highest HiPIP potential reported. The presence of histidines in the sequence does not per se predict a pH-dependent redox potential. Only C. vinosum and R. gelatinosus HiPIPs show a weak but significant pH dependence with a difference of 35 mV between the low- and the high-pH form and maximum slopes of -20 mV/unit. The dependence of the midpoint potential on temperature and on ionic strength varies over the different HiPIPs. The dependence of the potentials on square root of I cannot be fully explained by the Debye-Hückel theory because the linearity exceeds the limiting concentration and only small negative slopes are observed (o to -28 mV/square root of M) Combination of the sequences, the optical spectra, the overall charges, and the redox thermodynamics suggests that existence of two groups of HiPIPs. One group consists of Chromatium-like HiPIPs with redox potentials between 300 and 350 mV, modulated only by the solvation of the cluster. The second group is formed by Ectothiorhodospira-like HiPIPS with potentials between 50 and 500 mV, modulated by the overall charge of the peptide (25 mV/unit) and by the solvation of the cluster.


Subject(s)
Bacteria/chemistry , Iron-Sulfur Proteins/chemistry , Amino Acids/pharmacology , Doxapram/analogs & derivatives , Doxapram/pharmacology , Electrochemistry , Electron Transport , Hydrogen-Ion Concentration , Iron-Sulfur Proteins/metabolism , Isoelectric Point , Osmolar Concentration , Oxidation-Reduction , Polylysine/metabolism , Spectrum Analysis , Temperature , Thermodynamics
10.
Eur J Biochem ; 232(3): 811-7, 1995 Sep 15.
Article in English | MEDLINE | ID: mdl-7588720

ABSTRACT

The reversible 2 x 1 e- reduction of the cubane cluster from oxidized to reduced to super-reduced states ([4Fe-4S]3+<-->[4Fe-4S]2+<-->[4Fe-4S]1+) was studied in high-potential iron-sulfur proteins (HiPIPs). Super-reduction to the 1+ state was not observed in any of the seven HiPIPs tested during cyclic voltammetry (down to -0.95 V). However, equilibration at low potential (pH 7.5) of Rhodopila globiformis HiPIP yields a transient peak around -0.47 V due to the oxidation of super-reduced HiPIP adsorbed at the electrode. The peak area depends on the equilibration potential according to a one-electron Nernst curve with a half-wave potential at -0.91 V. Reduction of R. globiformis HiPIP with titanium (III)citrate at pH 9.5 is very slow [pseudo-first-order half-life of 23 min with a 100-fold excess Ti(III)] but is reversible, and the EPR spectrum with g values of 2.04 and 1.92 is similar to that of reduced [4Fe-4S]1+ ferredoxins. Chemical or electrochemical reoxidation of the super-reduced form resulted in an EPR spectrum with g parallel = 2.12 and g perpendicular = 2.03, i.e. identical to that of oxidized HiPIP. From the equilibrium concentration of super-reduced HiPIP at a low concentration of Ti(III), a reduction potential of -0.64 V can be estimated. Super-reduction of the large HiPIP (iso-2) from Rhodospirillum salinarum is also possible with Ti(III)(gz = 2.05) but the super-reduced state is unstable. No super-reduction with Ti(III) was observed for the other HiPIPs. The difference between the electrochemically observed reduction potential and oxidation potential is explained by a fast and reversible conformational change upon super-reduction. The rate of super-reduction with Ti(III) is limited by the small amount (0.1%) of HiPIP in the 2+ state with the super-reduced conformation.


Subject(s)
Iron-Sulfur Proteins/chemistry , Protein Denaturation , Bacteria/chemistry , Bacterial Proteins/chemistry , Citrates/chemistry , Electrochemistry , Electrodes , Electron Spin Resonance Spectroscopy , Hydrogen-Ion Concentration , Oxidation-Reduction , Rhodospirillum/chemistry , Titanium/chemistry
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