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1.
Biochem Soc Trans ; 33(Pt 4): 867-72, 2005 Aug.
Article in English | MEDLINE | ID: mdl-16042616

ABSTRACT

A general strategy for the expression of bacterial membrane transport and receptor genes in Escherichia coli is described. Expression is amplified so that the encoded proteins comprise 5-35% of E. coli inner membrane protein. Depending upon their topology, proteins are produced with RGSH6 or a Strep tag at the C-terminus. These enable purification in mg quantities for crystallization and NMR studies. Examples of one nutrient uptake and one multidrug extrusion protein from Helicobacter pylori are described. This strategy is successful for membrane proteins from H. pylori, E. coli, Enterococcus faecalis, Bacillus subtilis, Staphylococcus aureus, Microbacterium liquefaciens, Brucella abortus, Brucella melitensis, Campylobacter jejuni, Neisseria meningitides, Streptomyces coelicolor and Rhodobacter sphaeroides.


Subject(s)
Membrane Transport Proteins/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biological Transport, Active , Circular Dichroism , DNA, Bacterial/genetics , Helicobacter pylori/chemistry , Helicobacter pylori/genetics , Helicobacter pylori/metabolism , Membrane Transport Proteins/chemistry , Membrane Transport Proteins/genetics , Models, Biological , Plasmids , Restriction Mapping , Symporters/genetics , Symporters/metabolism
2.
Biochim Biophys Acta ; 1510(1-2): 464-73, 2001 Feb 09.
Article in English | MEDLINE | ID: mdl-11342180

ABSTRACT

The D-galactose-H(+) symport protein (GalP) of Escherichia coli is a homologue of the human glucose transport protein, GLUT1. After amplified expression of the GalP transporter in E. coli, other membrane proteins were prereacted with N-ethylmaleimide in the presence of excess D-galactose to protect GalP. Inner membranes were then specifically spin labelled on Cys(374) of GalP with 4-maleimide-2,2,6,6-tetramethylpiperidine-1-oxyl. The electron paramagnetic resonance (EPR) spectra are characteristic of a single labelling site in which the mobility of the spin label is very highly constrained. This is confirmed with other nitroxyl spin labels, which are derivatives of iodoacetamide and indanedione. Saturation transfer EPR spectra indicate that the overall rotation of the GalP protein in the membrane is slow at low temperatures (approx. 2 degrees C), but considerably more rapid and highly anisotropic at physiological temperatures. The rate of rotation about the membrane normal at 37 degrees C is consistent with predictions for a 12-transmembrane helix assembly that is less than closely packed.


Subject(s)
Calcium-Binding Proteins , Escherichia coli/genetics , Monosaccharide Transport Proteins/genetics , Periplasmic Binding Proteins , Spin Labels , Amino Acid Sequence , Binding Sites , Cell Membrane/metabolism , Diffusion , Electron Spin Resonance Spectroscopy/methods , Escherichia coli/metabolism , Molecular Sequence Data , Monosaccharide Transport Proteins/biosynthesis , Monosaccharide Transport Proteins/chemistry , Plasmids , Temperature
3.
J Biol Chem ; 276(30): 27981-8, 2001 Jul 27.
Article in English | MEDLINE | ID: mdl-11375981

ABSTRACT

The rat transporter rCNT1 is the archetype of a family of concentrative nucleoside transporters (CNTs) found both in eukaryotes and in prokaryotes. In the present study we have used antibodies to investigate the subcellular distribution and membrane topology of this protein. rCNT1 was found to be expressed predominantly in the brush-border membranes of the polarized epithelial cells of rat jejunum and renal cortical tubules and in the bile canalicular membranes of liver parenchymal cells, consistent with roles in the absorption of dietary nucleosides, of nucleosides in the glomerular filtrate, or of nucleosides arising from the action of extracellular nucleotidases, respectively. The effect of endoglycosidase F treatment on wild-type and mutant rCNT1 expressed in Xenopus oocytes revealed that the recombinant transporter could be glycosylated at either or both of Asn605 and Asn643, indicating that its C terminus is extracellular. In contrast, potential N-glycosylation sites introduced near the N terminus, or between putative transmembrane (TM) helices 4 and 5, were not glycosylated. The deduced orientation of the N terminus in the cytoplasm was confirmed by immunocytochemistry on intact and saponin-permeabilized Chinese hamster ovary cells expressing recombinant rCNT1. These results, in conjunction with extensive analyses of CNT family protein sequences using predictive algorithms, lead us to propose a revised topological model, in which rCNT1 possesses 13 TM helices with the hydrophilic N-terminal and C-terminal domains on the cytoplasmic and extracellular sides of the membrane, respectively. Furthermore, we show that the first three TM helices, which are absent from prokaryote CNTs, are not essential for transporter function; truncated proteins lacking these helices, derived either from rCNT1 or from its human homolog hCNT1, were found to retain significant sodium-dependent uridine transport activity when expressed in oocytes.


Subject(s)
Carrier Proteins/chemistry , Carrier Proteins/physiology , Membrane Transport Proteins , Amino Acid Motifs , Animals , Asparagine/chemistry , Biological Transport , Blotting, Western , CHO Cells , Cell Membrane/metabolism , Cricetinae , DNA, Complementary/metabolism , Gene Deletion , Glycosylation , Humans , Immunohistochemistry , Intestinal Mucosa/metabolism , Kidney/metabolism , Mannosyl-Glycoprotein Endo-beta-N-Acetylglucosaminidase/pharmacology , Mutagenesis, Site-Directed , Mutation , Oocytes/metabolism , Protein Structure, Secondary , Protein Structure, Tertiary , Rats , Recombinant Proteins/metabolism , Tissue Distribution , Transcription, Genetic , Transfection , Uridine/metabolism , Xenopus
4.
Biochem J ; 353(Pt 3): 709-17, 2001 Feb 01.
Article in English | MEDLINE | ID: mdl-11171069

ABSTRACT

The galactose-H(+) membrane-transport protein, GalP, of Escherichia coli is similar in substrate specificity and susceptibility to cytochalasin B and forskolin, to the human GLUT1 sugar-transport protein; furthermore, they are about 30% identical in amino acid sequence. Transport activities of both GalP and GLUT1 are inhibited by the thiol-group-specific reagent, N-ethylmaleimide. GalP contains only three cysteine residues at positions 19, 374 and 389, each of which we have mutated, singly and in combination, to serine. Each single change of Cys-->Ser has only a minor effect on transport activity, whereas alteration of all three simultaneously profoundly diminishes V(max) for transport. The high level of expression of the GalP protein facilitates measurements of the reactivity of each mutant with N-ethylmaleimide or eosin 5-maleimide, which conclusively demonstrate that Cys(374) is the site of covalent modification by the reagents. By comparing the reactivity of Cys(374) in right-side-out and inside-out vesicles it appears that Cys(374) is located on the cytoplasmic face of the GalP protein. Although impaired in transport activity, the 'Cys-free' mutant, with all three cysteine residues mutated into serine, binds cytochalasin B and forskolin with wild-type affinities. All these results are interpreted in terms of a 12-helix model of the folding of the protein, in which the relative orientations of helix 10, containing the reactive Cys(374) residue, and helix 11, containing the unreactive Cys(389) residue, can now be defined.


Subject(s)
Anti-Bacterial Agents/metabolism , Calcium-Binding Proteins , Cysteine/genetics , Ethylmaleimide/metabolism , Monosaccharide Transport Proteins/metabolism , Periplasmic Binding Proteins , Amino Acid Sequence , Base Sequence , Biological Transport , Colforsin/metabolism , Cytochalasin B/metabolism , DNA Primers , Eosine Yellowish-(YS)/analogs & derivatives , Eosine Yellowish-(YS)/metabolism , Galactose/metabolism , Molecular Sequence Data , Monosaccharide Transport Proteins/chemistry , Monosaccharide Transport Proteins/genetics , Mutagenesis, Site-Directed , Protein Binding
5.
Biochim Biophys Acta ; 1509(1-2): 55-64, 2000 Dec 20.
Article in English | MEDLINE | ID: mdl-11118517

ABSTRACT

The binding of the transport inhibitor forskolin, synthetically labelled with (13)C, to the galactose-H(+) symport protein GalP, overexpressed in its native inner membranes from Escherichia coli, was studied using cross-polarization magic angle spinning (13)C NMR. (13)C-Labelled D-galactose and D-glucose were displaced from GalP with the singly labelled [7-OCO(13)CH(3)]forskolin and were not bound to any alternative site within the protein, demonstrating that any multiple sugar binding sites are not simultaneously accessible to these sugars and the inhibitor within GalP. The observation of singly (13)C-labelled forskolin was hampered by interference from natural abundance (13)C in the membranes and so the effectiveness of double-quantum filtration was assessed for the exclusive detection of (13)C spin pairs in sugar (D-[1,2-(13)C(2)]glucose) and inhibitor ([7-O(13)CO(13)CH(3)]forskolin) bound to the GalP protein. The solid state NMR methodology was not effective in creating double-quantum selection of ligand bound with membranes in the 'fluid' state (approx. 2 degrees C) but could be applied in a straightforward way to systems that were kept frozen. At -35 degrees C, double-quantum filtration detected unbound sugar that was incorporated into ice structure within the sample, and was not distinguished from protein-bound sugar. However, the method detected doubly labelled forskolin that is selectively bound only to the transport system under these conditions and provided very effective suppression of interference from natural abundance (13)C background. These results indicate that solid state NMR methods can be used to resolve selectively the interactions of more hydrophobic ligands in the binding sites of target proteins.


Subject(s)
Calcium-Binding Proteins , Escherichia coli/metabolism , Membrane Proteins/metabolism , Monosaccharide Transport Proteins/antagonists & inhibitors , Periplasmic Binding Proteins , Carbon Isotopes , Colforsin/pharmacology , Escherichia coli/chemistry , Freezing , Galactose/metabolism , Glucose/metabolism , Magnetic Resonance Spectroscopy/methods , Molecular Structure , Monosaccharide Transport Proteins/biosynthesis , Monosaccharide Transport Proteins/metabolism
6.
Biochem Soc Trans ; 28(4): 513-7, 2000.
Article in English | MEDLINE | ID: mdl-10961950

ABSTRACT

A general strategy is described for the amplified expression, purification and characterization in Escherichia coli of multidrug efflux proteins from Staphylococcus aureus, Bacillus subtilis, Methanococcus janaschii and E. coli. They all catalyse drug/H(+) antiport of substrates such as quinolones and ethidium and exemplify a family of putatively 12-helix membrane proteins. The gene for each protein was cloned downstream of the tac promoter in plasmid pTTQ18; an oligonucleotide encoding six histidine residues was added, in frame, to the C-terminus to facilitate purification. Growth conditions were optimized in 1-25-litre cultures of E. coli host strains to amplify the expression of each protein; the retention of activity was confirmed by assays of antibiotic resistance in vivo and/or assays of energized transport activity in vitro with synthetic substrates. Proteins were solubilized in dodecylmaltoside and purified to more than 90% homogeneity with Ni(2+)-nitrilotriacetate-affinity column chromography, yielding 5-25 mg per 25 litres of original culture. All the transport proteins migrated anomalously in SDS/PAGE at apparent molecular masses below those predicted from the gene sequence; identity and integrity were therefore confirmed by N-terminal amino acid sequencing and Western blotting for the C-terminal hexahistidine tag. Examination of the secondary structure of detergent-solubilized proteins by CD or Fourier-transform infrared spectroscopy following purification indicated a high content of alpha-helix (more than 75%). Matrix-assisted laser desorption ionization MS confirmed the high degree of purity and the true molecular mass. The formation of three-dimensional crystals is being attempted but crystals have yet to be grown that diffract X-rays. The growth of two-dimensional protein arrays has been more successful, with diffraction of electrons at low resolution. Proteins have been fused to green fluorescent protein or maltose-binding protein to facilitate these structural analyses. In addition, ligands for efflux proteins labelled with (13)C or (15)N have been synthesized to implement solid-state NMR studies of the ligand-binding site.


Subject(s)
Carrier Proteins/chemistry , Carrier Proteins/genetics , Carrier Proteins/isolation & purification , Drug Resistance, Microbial , Bacillus subtilis/metabolism , Benzimidazoles/pharmacology , Biological Transport , Blotting, Western , Chromatography, Affinity , Circular Dichroism , Cloning, Molecular , Electrophoresis, Polyacrylamide Gel , Escherichia coli/metabolism , Fluorescent Dyes/pharmacology , Magnetic Resonance Spectroscopy , Methanococcus/metabolism , Models, Biological , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Spectroscopy, Fourier Transform Infrared , Staphylococcus aureus/metabolism , Time Factors
7.
Clin Chem ; 46(1): 38-46, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10620570

ABSTRACT

BACKGROUND: We evaluated assays to measure both total tissue plasminogen activator (tPA) and the three principle forms of tPA in plasma: active tPA, tPA complexed with plasminogen activator inhibitor type 1 (PAI-1), and tPA complexed with C1-inhibitor. METHODS: Active tPA was measured by use of an indirect amidolytic assay and immunofunctional assays. tPA/PAI-1, tPA/C1-inhibitor, and total tPA antigen were measured by use of microtiter plates coated with anti-tPA antibodies and, respectively, anti-PAI-1, anti-C1-inhibitor, and anti-tPA antibodies conjugated to peroxidase. RESULTS: The immunofunctional tPA assay detected 1 U/L (0.001 U/mL) tPA and recovered 108% +/- 12% of active tPA added to samples containing high (mean, 60 000 IU/L) PAI-1 activities vs a detection limit of 10 U/L (0.01 U/mL) and 13% +/- 25% recovery for the indirect amidolytic tPA activity assay. For measurement of tPA/PAI-1 complex, polyclonal anti-PAI-1 conjugates recovered 112% +/- 20% of the expected tPA/PAI-1 vs recovery of only 38% +/- 16% when monoclonal anti-PAI-1 conjugates were used. Of three methods tested, two total tPA antigen assays correlated well (r(2) = 0.85) and showed recoveries near 100%, whereas the third method showed lower correlations, higher intercepts, and falsely high recovery. A single anti-tPA capture antibody that performed the best in the individual assay evaluations was used to measure the different forms of tPA in 22 samples with a range of tPA and PAI-1 values. The sum of the molar concentrations of active tPA, tPA/PAI-1, and tPA/C1-inhibitor using the optimized methods was equal to 94% +/- 7% of measured total tPA. CONCLUSION: Optimized assays based on a single anti-tPA capture antibody can be used to accurately measure the major forms of tPA in plasma.


Subject(s)
Tissue Plasminogen Activator/blood , Cardiopulmonary Bypass , Humans , Immunoenzyme Techniques , Isoenzymes/blood , Reagent Kits, Diagnostic , Sensitivity and Specificity
8.
Clin Chem ; 45(6 Pt 1): 757-70, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10351983

ABSTRACT

BACKGROUND: The microscopic examination of urine sediment is one of the most commonly performed microscope-based laboratory tests, but despite its widespread use, there has been no detailed study of the competency of medical technologists in performing this test. One reason for this is the lack of an effective competency assessment tool that can be applied uniformly across an institution. METHODS: This study describes the development and implementation of a computer program, Urinalysis-ReviewTM, which periodically tests competency in microscopic urinalysis and then summarizes individual and group test results. In this study, eight Urinalysis-Review exams were administered over 2 years to medical technologists (mean, 58 technologists per exam; range, 44-77) at our academic medical center. The eight exams contained 80 test questions, consisting of 72 structure identification questions and 8 quantification questions. The 72 structure questions required the identification of 134 urine sediment structures consisting of 63 examples of cells, 25 of casts, 18 of normal crystals, 8 of abnormal crystals, and 20 of organisms or artifacts. RESULTS: Overall, the medical technologists correctly identified 84% of cells, 72% of casts, 79% of normal crystals, 65% of abnormal crystals, and 81% of organisms and artifacts, and correctly answered 89% of the quantification questions. The results are probably a slight underestimate of competency because the images were analyzed without the knowledge of urine chemistry results. CONCLUSIONS: The study shows the feasibility of using a computer program for competency assessment in the clinical laboratory. In addition, the study establishes baseline measurements of competency that other laboratories can use for comparison, and which we will use in future studies that measure the effect of continuing education efforts in microscopic urinalysis.


Subject(s)
Educational Measurement/methods , Professional Competence , Urinalysis , Humans , Longitudinal Studies , Software
9.
Biochemistry ; 38(6): 1676-84, 1999 Feb 09.
Article in English | MEDLINE | ID: mdl-10026245

ABSTRACT

The ProP protein of Escherichia coli is an osmoregulatory H+-compatible solute cotransporter. ProP is activated by an osmotic upshift in both whole cells and membrane vesicles. We are using biochemical and biophysical techniques to explore the osmosensory and catalytic mechanisms of ProP. We now report the purification and reconstitution of the active transporter. Protein purification was facilitated by the addition of six histidine (His) codons to the 3' end of proP. The recombinant gene was overexpressed from the E. coli galP promoter, and ProP-(His)6 was shown to be functionally equivalent to wild-type ProP by enzymatic assay of whole cells. ProP-(His)6, purified by Ni2+ (NTA) affinity chromatography, cross-reacted with antibodies raised against the ProP protein. ProP-(His)6 was reconstituted into Triton X-100 destabilized liposomes prepared with E. coli phospholipid. The reconstituted transporter mediated proline accumulation only if (1) a membrane potential was generated by valinomycin-mediated K+ efflux and (2) the proteoliposomes were subjected to an osmotic upshift (0.6 M sucrose). Activity was also stimulated by DeltapH. Pure ProP acts, in the proteoliposome environment, as sensor, transducer, and respondent to a hyperosmotic shift. It is the first such osmosensor to be isolated.


Subject(s)
Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Carrier Proteins/isolation & purification , Carrier Proteins/metabolism , Escherichia coli Proteins , Escherichia coli/metabolism , Symporters , Bacterial Proteins/biosynthesis , Bacterial Proteins/genetics , Biological Transport , Carrier Proteins/biosynthesis , Carrier Proteins/genetics , Escherichia coli/genetics , Genetic Vectors/metabolism , Histidine/genetics , Kinetics , Osmolar Concentration , Proteolipids/metabolism , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism
11.
Appl Opt ; 38(12): 2471-7, 1999 Apr 20.
Article in English | MEDLINE | ID: mdl-18319814

ABSTRACT

We have studied the history of vibration and demonstrate a laser-based noncontact interferometric vibration sensor. The sensor promises the measurement of microdisplacement by using a Fabry-Perot cavity formed between a partially coated gradient-index lens and a movable reflector. Displacement is determined by the detection of interference fringes caused by phase modulation within the cavity. The sensor was tested in conjunction with both multimode and single-mode fiber transmission. Calibration with multimode fiber produced a fringe-contrast function that decreased monotonically with displacement. This calibration allowed at least 30 fringes to be discriminated, giving a displacement resolution of 0.034 microm across a range of 10.2 microm. Dynamic tests demonstrated a working range of at least 3.74 microm at frequencies as high as 2 kHz. Similar tests in which single-mode fiber was used indicated a dynamic working range of at least 4.29 microm.

12.
Biophys J ; 75(6): 2794-800, 1998 Dec.
Article in English | MEDLINE | ID: mdl-9826601

ABSTRACT

The weak binding of sugar substrates fails to induce any quantifiable physical changes in the L-fucose-H+ symport protein, FucP, from Escherichia coli, and this protein lacks any strongly binding ligands for competitive binding assays. Access to substrate binding behavior is however possible using NMR methods which rely on substrate immobiliza-tion for detection. Cross-polarization from proton to carbon spins could detect the portion of 13C-labeled substrate associated with 0.2 micromol of the functional transport system overexpressed in the native membranes. The detected substrate was shown to be in the FucP binding site because its signal was diminished by the unlabeled substrates L-fucose and L-galactose but was unaffected by a three- to fivefold molar excess of the non-transportable stereoisomer D-fucose. FucP appeared to bind both anomers of its substrates equally well. An NMR method, designed to measure the rate of substrate exchange, could show that substrate exchanged slowly with the carrier center (>10(-1) s), although its dynamics are not necessarily coupled strongly to this site within the protein. Relaxation measurements support this view that fluctuations in the interaction with substrate would be confined to the binding site in this transport system.


Subject(s)
Carrier Proteins/chemistry , Carrier Proteins/metabolism , Escherichia coli Proteins , Magnetic Resonance Spectroscopy/methods , Symporters , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Binding Sites , Binding, Competitive , Biophysical Phenomena , Biophysics , Carbohydrate Metabolism , Escherichia coli/metabolism , Fucose/metabolism , Kinetics , Ligands , Protein Binding , Thermodynamics
14.
Clin Chem ; 44(8 Pt 1): 1692-700, 1998 Aug.
Article in English | MEDLINE | ID: mdl-9702957

ABSTRACT

The microscopic examination of urine sediment is a common diagnostic tool taught to medical students, medical technologists, and others. The urine microscopic exam is difficult to teach because supervised instruction and textbook-based teaching suffer from numerous drawbacks. Here, we describe Urinalysis-Tutor, a computer program that uses digitized microscope images and computer-based teaching techniques to systematically teach the urine microscopic exam. In addition, we report the results of a 2-year study that evaluated the effectiveness of the program in 314 second year medical students who were required to use the program. The program contained two, 20-question exams. In the first year of the study (1996), one of the exams was chosen as the pretest and the other as the posttest; the pretest had to be completed before the students viewed the contents of the program, and the posttest was taken after finishing the tutorial. In 1997, the order of the two exams was reversed. In 1996, 159 students completed the study. The mean pretest score was 34% (SD, 14%), the mean posttest score was 71% (SD, 13%), and the improvement was significant (P <0.001, paired t-test). In 1997, 155 students participated. The mean pretest score was 41% (SD, 11%), the mean posttest score was 71% (SD, 13%), and the improvement was significant (P <0.001, paired t-test). The study shows that Urinalysis-Tutor helps medical students learn to interpret the microscopic appearance of urine sediment and that it is feasible to implement this tutorial in a medical school class.


Subject(s)
Computer-Assisted Instruction , Education, Medical, Undergraduate/methods , Teaching Materials , Teaching/methods , Urinalysis , Curriculum , Educational Measurement , Humans , Software
16.
Appl Opt ; 36(22): 5557-61, 1997 Aug 01.
Article in English | MEDLINE | ID: mdl-18259380

ABSTRACT

An optical sensor for the dynamic measurement of proximity is presented. The sensor combines an extrinsic geometric transducer with interferometric encoding for high vibration sensitivity. Static calibration showed a unique variation in interference contrast over at least 60 fringes, leading to a measurement range of 20 mum and a resolution of at least 0.033mum. Dynamic excitation by using low-amplitude vibrations at 3.6 kHz showed a similar contrast variation, verifying fringe discrimination up to the sixth order. With verification of dynamic performance over all 60 fringes, the sensor should offer a low-cost approach to vibration monitoring in electrical switchgear.

17.
J Biol Chem ; 272(24): 15189-99, 1997 Jun 13.
Article in English | MEDLINE | ID: mdl-9182541

ABSTRACT

The galactose-H+ symport protein (GalP) of Escherichia coli is very similar to the human glucose transport protein, GLUT1, and both contain a highly conserved Asn residue in predicted helix 11 that is different in a cytochalasin B-resistant member of this sugar transport family (XylE). The role of the Asn394 residue (which is predicted to be in putative trans-membrane alpha-helix 11) in the structure/activity relationship of the D-galactose-H+ symporter (GalP) was therefore assessed by measuring the interaction of sugar substrates and the inhibitory antibiotics, cytochalasin B, and forskolin with the wild-type and Asn394 --> Gln mutant proteins. Steady-state fluorescence quenching experiments show that the mutant protein binds cytochalasin B with a Kd 37-53-fold higher than the wild type. This low affinity binding was not detected with equilibrium binding or photolabeling experiments. In contrast, the mutant protein binds forskolin with a Kd similar to that of the wild type and is photolabeled by 3-125I-4-azido-phenethylamido-7-O-succinyl-desacetyl-forskolin. The mutant protein displays an increased amount of steady-state fluorescence quenching with the binding of forskolin, suggesting that the substitution of the Asn residue has altered the environment of a tryptophan, probably Trp395, in a conformationally active region of the protein. Time-resolved fluorescence measurements on the mutant protein provided association and dissociation rate constants (k2 and k-2), describing the initial interaction of cytochalasin B to the inward-facing binding site (Ti), that are decreased (9-fold) and increased (4.9-fold) compared with the wild type. This yielded a dissociation constant (K2) for cytochalasin B to the inward-facing binding site 44-fold higher than that of the wild type. The binding of forskolin gave values for k2 and k-2 3.9- and 3.6-fold lower, respectively, yielding a K2 value for Ti similar to that of the wild type. The low overall affinity (high Kd) of the mutant protein for cytochalasin B is due mainly to a disruption in binding to the Ti conformation. It is proposed that Asn394 forms either a direct binding interaction with cytochalasin B or is part of the immediate environment of the binding site and that Asn394 is in the immediate environment, but not part, of the forskolin binding site. The ability of the mutant protein to catalyze energized transport is only mildly impaired with 4.8- and 2.1-fold reduction in Vmax/Km values for D-galactose and D-glucose, respectively. In stark contrast, the overall Kd describing binding of D-galactose and D-glucose to the inward-facing conformation of the mutant and their subsequent translocation across the membrane is substantially increased (64-fold for D-galactose and 163.3-fold for D-glucose). These data indicate that Asn394 is associated with both the cytochalasin B and internal sugar binding sites. This conclusion is also supported by data showing that the sugar specificity of the mutant protein has been altered for D-xylose. This work powerfully illustrates how comparisons of the aligned amino acid sequences of homologous membrane proteins of unknown structure and characterization of their phenotypes can be used to map substrate and ligand binding sites.


Subject(s)
Asparagine/metabolism , Calcium-Binding Proteins , Carrier Proteins/metabolism , Cytochalasin B/metabolism , Escherichia coli/metabolism , Galactose/metabolism , Glucose/metabolism , Monosaccharide Transport Proteins , Periplasmic Binding Proteins , Amino Acid Sequence , Binding Sites , Biological Transport , Carrier Proteins/chemistry , Catalysis , Colforsin/metabolism , Glycine/metabolism , Humans , Kinetics , Molecular Sequence Data
18.
J Biol Chem ; 271(26): 15358-66, 1996 Jun 28.
Article in English | MEDLINE | ID: mdl-8662938

ABSTRACT

The lactose transport protein (LacS) of Streptococcus thermophilus was amplified to levels as high as 8 and 30% of total membrane protein in Escherichia coli and S. thermophilus, respectively. In both organisms the protein was functional and the expression levels were highest with the streptococcal lacS promoter. Also a LacS deletion mutant, lacking the carboxyl-terminal regulatory domain, could be amplified to levels >20% of membrane protein. Membranes from S. thermophilus proved to be superior in terms of efficient solubilization and ease and extent of purification of LacS; >95% of LacS was solubilized with relatively low concentrations of Triton X-100, n-octyl-beta-D-glucoside, n-dodecyl-beta-D-maltoside, or C12E8. The LacS protein carrying a poly-histidine tag was purified in large quantities (approximately 5 mg/liter of culture) and with a purity >98% in a two-step process involving nickel chelate affinity and anion exchange chromatography. The membrane reconstitution of LacS was studied systematically by stepwise solubilization of preformed liposomes, prepared from E. coli phospholipid and phosphatidylcholine, and protein incorporation at the different stages of liposome solubilization. The detergents were removed by adsorption onto polystyrene beads and H+-lactose symport and lactose counterflow were measured. Highest transport activities were obtained when Triton X-100 was used throughout the solubilization/purification procedure, whereas activity was lost irreversibly with n-octyl-beta-D-glucoside. For reconstitutions mediated by n-dodecyl-beta-D-maltoside, C12E8, and to a lesser extent Triton X-100, the highest transport activities were obtained when the liposomes were titrated with low amounts of detergent (onset of liposome solubilization). Importantly, under these conditions proteoliposomes were obtained in which LacS was reconstituted in an inside-out orientation, as suggested by the outside labeling of a single cysteine mutant with a membrane impermeable biotin-maleimide. The results are consistent with a mechanism of reconstitution in which the hydrophilic regions of LacS prevent a random insertion of the protein into the membrane. Consistent with the in vivo lactose/galactose exchange catalyzed by the LacS protein, the maximal rate of lactose counterflow was almost 2 orders of magnitude higher than that of H+-lactose symport.


Subject(s)
Escherichia coli Proteins , Lactose/metabolism , Membrane Transport Proteins/metabolism , Monosaccharide Transport Proteins , Streptococcus/metabolism , Symporters , Amino Acid Sequence , Base Sequence , Biological Transport , Cell-Free System , Detergents , Kinetics , Liposomes , Membrane Proteins/metabolism , Membrane Transport Proteins/chemistry , Membranes, Artificial , Molecular Sequence Data , Oligodeoxyribonucleotides/chemistry , Recombinant Proteins , Solubility
19.
Mol Microbiol ; 19(5): 911-22, 1996 Mar.
Article in English | MEDLINE | ID: mdl-8830272

ABSTRACT

A new family of homologous membrane proteins that transport galactosides-pentoses-hexuronides (GPH) is described. By analysing the aligned amino acid sequences of the GPH family, and by exploiting their different specificities for cations and sugars, we have designed mutations that yield novel insights into the nature of ligand binding sites in membrane proteins. Mutants have been isolated/constructed in the melibiose transport proteins of Escherichia coli, Klebsiella pneumoniae and Salmonella typhimurium, and the lactose transport protein of Streptococcus thermophilus which facilitate uncoupled transport or have an altered cation and/or substrate specificity. Most of the mutations map in the amino-terminal region, in or near amphipathic alpha-helices II and IV, or in interhelix-loop 10-11 of the transport proteins. On the basis of the kinetic properties of these mutants, and the primary and secondary structure analyses presented here, we speculate on the cation binding pocket of this family of transporters. The regulation of the transporters through interaction with, or phosphorylation by, components of the phosphoenolpyruvate:sugar phosphotransferase system is also discussed.


Subject(s)
Bacterial Proteins/metabolism , Carbohydrate Metabolism , Carrier Proteins/metabolism , Cations/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Biological Transport , Carrier Proteins/chemistry , Forecasting , Galactosides/metabolism , Molecular Sequence Data , Pentoses/metabolism , Protein Structure, Secondary
20.
J Biol Chem ; 270(51): 30359-70, 1995 Dec 22.
Article in English | MEDLINE | ID: mdl-8530461

ABSTRACT

The interactions between the D-galactose-H+ symporter (GalP) from Escherichia coli and the inhibitory antibiotics, cytochalasin B and forskolin, and the substrates, D-galactose and H+, have been investigated for the wild-type protein and the mutants Trp-371-->Phe and Trp-395-->Phe, so that the roles of these residues in the structure-activity relationship could be assessed. Neither mutation prevented photolabeling by either [4-3H]cytochalasin B or by 3-[125I]iodo-4-azidophenethyl-amido-7-O-succinyldesacetylforskolin ([125I]APS-forskolin). However, measurements of protein fluorescence show that both residues are in structural domains, the conformations of which are perturbed by the binding of cytochalasin B or forskolin. Moreover, both mutations cause a substantial decrease in the affinity of the inward-facing site of the GalP protein for cytochalasin B, 10- and 43-fold, respectively, but have little effect upon the affinity of this site for forskolin, 0.8- and 2.6-fold reductions, respectively. Both these mutations change the equilibrium between the putative outward- (T1) and inward-facing (T2) conformations, so that the inward-facing form is more favored. They also stabilize a different conformational state, "T3-antibiotic," in which the initial interactions between the protein and antibiotics are tightened. Overall, this has the effect of compensating for the reduction in affinity for cytochalasin B, so that the respective overall Kd values are 0.74- and 3.5-fold that of the wild type, while causing a slight increase, 1.5- and 3.2-fold, respectively, in affinity of the mutants for forskolin. The Trp-371-->Phe mutation causes a 15-fold reduction in the affinity of the inward-facing site for D-galactose, suggesting that this residue forms part of the sugar binding site. In contrast, the Trp-395-->Phe mutation has no effect upon the affinity of the inward-facing site for D-galactose. These effects may be related to the reduction in galactose-H+ symport activity only in the Trp-371-->Phe mutant, although it still effects active transport to the same extent as the Trp395-->Phe mutant. However, there is a 10-20-fold increase in the Km values for energized transport of D-galactose for both mutants.


Subject(s)
Anti-Bacterial Agents/metabolism , Calcium-Binding Proteins , Carrier Proteins/metabolism , Escherichia coli/metabolism , Galactose/metabolism , Monosaccharide Transport Proteins , Periplasmic Binding Proteins , Point Mutation , Tryptophan , Base Sequence , Binding Sites , Carrier Proteins/biosynthesis , Carrier Proteins/isolation & purification , Cell Membrane/metabolism , Colforsin/metabolism , Colforsin/pharmacology , Cytochalasin B/metabolism , Cytochalasin B/pharmacology , DNA Primers , Genes, Bacterial , Iodine Radioisotopes , Kinetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Phenylalanine , Polymerase Chain Reaction , Recombinant Proteins/biosynthesis , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Tritium
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