Bootstrapping the energy flow in the beginning of life.

This paper suggests that the energy flow on which all living structures depend only started up slowly, the low-energy, initial phase starting up a second, slightly more energetic phase, and so on. In this way, the build up of the energy flow follows a bootstrapping process similar to that found in the development of computers, the first generation making possible the calculations necessary for constructing the second one, etc. In the biogenetic upstart of an energy flow, non-metals in the lower periods of the Periodic Table of Elements would have constituted the most primitive systems, their operation being enhanced and later supplanted by elements in the higher periods that demand more energy. This bootstrapping process would put the development of the metabolisms based on the second period elements carbon, nitrogen and oxygen at the end of the evolutionary process rather than at, or even before, the biogenetic event.

Two approaches to the study of the origin of life.

This paper compares two approaches that attempt to explain the origin of life, or biogenesis. The more established approach is one based on chemical principles, whereas a new, yet not widely known approach begins from a physical perspective. According to the first approach, life would have begun with--often organic--compounds. After having developed to a certain level of complexity and mutual dependence within a non-compartmentalised organic soup, they would have assembled into a functioning cell. In contrast, the second, physical type of approach has life developing within tiny compartments from the beginning. It emphasises the importance of redox reactions between inorganic elements and compounds found on two sides of a compartmental boundary. Without this boundary, "life" would not have begun, nor have been maintained; this boundary--and the complex cell membrane that evolved from it--forms the essence of life.

Causes and consequences of eukaryotization through mutualistic endosymbiosis and compartmentalization.

This paper reviews and extends ideas of eukaryotization by endosymbiosis. These ideas are put within an historical context of processes that may have led up to eukaryotization and those that seem to have resulted from this process. Our starting point for considering the emergence and development of life as an organized system of chemical reactions should in the first place be in accordance with thermodynamic principles and hence should, as far as possible, be derived from these principles. One trend to be observed is the ever-increasing complexity resulting in several layers of compartmentalization of the reaction system, either spatial (of which the eukaryotic cell is an example), or functional (as in the gradually deepening distinction between metabolic, enzymatic and information-storing functions within the cell). One of the causes of this complexification of living systems will have been the changes in environmental conditions, particularly the geochemical impoverishment of the biosphere during geological history, partly brought about by living systems themselves, and partly by the trend towards increasing efficiency and specificity of the reactions that occur.

The functional role of class II-associated invariant chain peptide (CLIP) in its ability to variably modulate immune responses.

During the process of class II MHC assembly and cell surface expression, the class II-associated invariant chain peptide (CLIP) is removed from the peptide-binding groove of MHC, a task mediated by H-2M. This allows binding and presentation of peptide epitopes. We have previously shown that exogenously added CLIP interferes with this process and down-regulates the cell surface expression of class II molecules. In this study, we explored the effect of exogenously added CLIP on antigen-specific immune responses. In vivo studies with CLIP and various peptide and protein antigens with different affinities for I-A(d) molecules demonstrated that CLIP variably affects the T cell-mediated immune responses. Immunization with CLIP along with the antigen induced a shift from a T(h)1- to T(h)2-like response as determined by the cytokine profile and antibody isotype. These results suggest that the presence of exogenous CLIP can significantly influence the presentation of antigen by class II MHC molecules to CD4 T cells and thereby modulate immune responses. Exogenously added CLIP rapidly localized into the subcellular compartment of antigen-presenting cells where MHC class II molecules are present. We suggest that exogenous CLIP reduces the loading of peptides on the class II molecules, thus down-regulating MHC-peptide complexes on the cell surface. Alternatively, CLIP may bind to cell surface class II molecules and this complex is rapidly internalized resulting in reduced cell surface MHC class II expression. The reduced level of MHC-peptide complexes favors the activation of T(h)2 cells over T(h)1 cells. These results have implications in the regulation of immune responses, particularly the prevention of certain autoimmune diseases where T(h)1-type responses are pathogenic and T(h)2-type responses are protective.

Small-step invasion research.

Recent invasion research can be categorized broadly into two types: studies of the spatial spread, and those of the biological impact the invader has on the native biota. The first type is the most factual, and the second the most theoretical. So far, however, it is difficult to connect the two, implying that neither the spatial spread nor the species interactions can be explained in terms of each other. Recent models, analysing spatial spread, progress steadily by making small steps.

Side-effects of pesticides on ground-dwelling predatory arthropods in arable ecosystems.

The effects of above ground applications of pesticides in field crops on the epigeal predator fauna in the Lake Yssel polders in The Netherlands was assessed during a 20-month period by means of pitfall trapping in 17 commercially farmed fields and in one experimental field. The pesticides used during this period were the herbicides 2,4-D-amine and MCPA/MCPP and the insecticides deltamethrin, fenitrothion, and bromophos-ethyl. Deposition of the spray on the soil was determined. Bioassays were carried out in the fields in two cases. Of the taxa identified, i.e. staphylinids, carabids and spiders, the erigonid and linyphiid spiders appeared to be sensitive to the three insecticides. Long-term effects, however, could not be demonstrated. No effect was observed from the herbicide applications. Fields which were mechanically treated against weeds had a lower species diversity than chemically treated fields. Ploughing had a detrimental effect on the spiders. The effect of deltamethrin appeared to depend on weather conditions. At higher temperatures the effect was stronger than at lower temperatures, and no effects could be observed under rainy conditions. A guild of five species, i.e. Erigone atra, E. dentipalpis, Oedothorax apicatus, Meioneta rurestris and Bathyphantes gracilis, is recommended as an indicator for early detection of side-effects of insecticides on the epigeal predator fauna.