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1.
Phys Rev Lett ; 114(22): 227402, 2015 Jun 05.
Article in English | MEDLINE | ID: mdl-26196644

ABSTRACT

We report on the observation of macroscopic free exciton photoluminescence (PL) rings that appear in spatially resolved PL images obtained on a high purity GaAs sample. We demonstrate that a spatial temperature gradient in the photocarrier system, which is due to nonresonant optical excitation, locally modifies the population balance between free excitons and the uncorrelated electron-hole plasma described by the Saha equation and accounts for the experimentally observed nontrivial PL profiles. The exciton ring formation is a particularly instructive manifestation of the spatially dependent thermodynamics of a partially ionized exciton gas in a bulk semiconductor.

2.
Rev Sci Instrum ; 84(12): 123903, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24387442

ABSTRACT

We describe a two-color pump-probe scanning magneto-optical Kerr effect microscope which we have developed to investigate electron spin phenomena in semiconductors at cryogenic temperatures with picosecond time and micrometer spatial resolution. The key innovation of our microscope is the usage of an ultrafast "white light" supercontinuum fiber-laser source which provides access to the whole visible and near-infrared spectral range. Our Kerr microscope allows for the independent selection of the excitation and detection energy while avoiding the necessity to synchronize the pulse trains of two separate picosecond laser systems. The ability to independently tune the pump and probe wavelength enables the investigation of the influence of excitation energy on the optically induced electron spin dynamics in semiconductors. We demonstrate picosecond real-space imaging of the diffusive expansion of optically excited electron spin packets in a (110) GaAs quantum well sample to illustrate the capabilities of the instrument.

3.
Proc Natl Acad Sci U S A ; 97(16): 9168-73, 2000 Aug 01.
Article in English | MEDLINE | ID: mdl-10908648

ABSTRACT

We have isolated the human GRAF gene (for GTPase regulator associated with the focal adhesion kinase pp125(FAK)). This gene was fused with MLL in a unique t(5;11)(q31;q23) that occurred in an infant with juvenile myelomonocytic leukemia. GRAF encodes a member of the Rho family of the GTPase-activating protein (GAP) family. On the protein level, it is 90% homologous to the recently described chicken GRAF gene that functions as a GAP of RhoA in vivo and is thus a critical component of the integrin signaling transduction pathway. The particular position of the human GRAF gene at 5q31 and the proposed antiproliferative and tumor suppressor properties of its avian homologue suggest that it also might be pathogenetically relevant for hematologic malignancies with deletions of 5q. To investigate this possibility, we sequenced 4-5 individual cDNA clones from 13 cases in which one allele of GRAF was deleted. We found point mutations within the GAP domain of the second GRAF allele in one patient. In two additional patients we found an insertion of 52 or 74 bp within the GRAF cDNA that generates a reading frame shift followed by a premature stop codon. GRAF maps outside the previously defined commonly deleted 5q31 region. Nevertheless, inactivation of both alleles in at least some cases suggests that deletions and mutations of the GRAF gene may be instrumental in the development and progression of hematopoeitic disorders with a del(5q).


Subject(s)
Artificial Gene Fusion , Chromosomes, Human, Pair 11 , Chromosomes, Human, Pair 5 , DNA-Binding Proteins/genetics , GTPase-Activating Proteins/genetics , Proto-Oncogenes , Transcription Factors , Translocation, Genetic , Base Sequence , Chromosome Deletion , Chromosome Mapping , DNA Primers , Histone-Lysine N-Methyltransferase , Humans , Immunohistochemistry , In Situ Hybridization, Fluorescence , Infant , Male , Molecular Sequence Data , Myeloid-Lymphoid Leukemia Protein
5.
Blood ; 95(2): 610-8, 2000 Jan 15.
Article in English | MEDLINE | ID: mdl-10627470

ABSTRACT

Interleukin-15 (IL-15) induces proliferation and promotes cell survival of human T and B lymphocytes, natural killer cells, and neutrophils. Here we report the constitutive expression of a functional IL-15 receptor (IL-15R) in 6 of 6 myeloma cell lines and in CD38(high)/CD45(low )plasma cells belonging to 14 of 14 patients with multiple myeloma. Furthermore, we detected IL-15 transcripts in all 6 myeloma cell lines, and IL-15 protein in 4/6 cell lines and also in the primary plasma cells of 8/14 multiple myeloma patients. Our observations confirm the existence of an autocrine IL-15 loop and point to the potential paracrine stimulation of myeloma cells by IL-15 released from the cellular microenvironment. Blocking autocrine IL-15 in cell lines increased the rate of spontaneous apoptosis, and the degree of this effect was comparable to the pro-apoptotic effect of depleting autocrine IL-6 by antibody targeting. IL-15 was also capable of substituting for autocrine IL-6 in order to promote cell survival and vice versa. In short-term cultures of primary myeloma cells, the addition of IL-15 reduced the percentage of tumor cells spontaneously undergoing apoptosis. Furthermore, IL-15 lowered the responsiveness to Fas-induced apoptosis and to cytotoxic treatment with vincristine and doxorubicin but not with dexamethasone. These data add IL-15 to the list of important factors promoting survival of multiple myeloma cells and demonstrate that it can be produced and be functionally active in an autocrine manner. (Blood. 2000;95:610-618)


Subject(s)
Interleukin-15/genetics , Multiple Myeloma/immunology , Receptors, Interleukin-2/genetics , Adult , Aged , Apoptosis/drug effects , Apoptosis/immunology , Bone Marrow Cells/immunology , Bone Marrow Cells/pathology , Fas Ligand Protein , Flow Cytometry , Hematopoietic Stem Cells/drug effects , Hematopoietic Stem Cells/immunology , Hematopoietic Stem Cells/pathology , Humans , Interleukin-15/analysis , Interleukin-15/pharmacology , Leukocytes, Mononuclear/immunology , Leukocytes, Mononuclear/pathology , Membrane Glycoproteins/analysis , Middle Aged , Multiple Myeloma/pathology , Plasma Cells/immunology , Proto-Oncogene Proteins/analysis , Proto-Oncogene Proteins c-bcl-2/analysis , Receptors, Interleukin-15 , Receptors, Interleukin-2/analysis , Receptors, Interleukin-2/biosynthesis , Reverse Transcriptase Polymerase Chain Reaction , Transcription, Genetic , Tumor Cells, Cultured , bcl-2-Associated X Protein , fas Receptor/analysis
6.
Int J Oncol ; 15(1): 41-51, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10375592

ABSTRACT

A malignant insulinoma (LOHG-I), a carcinoid of the lung (LOHG-L), a parathyroid adenoma (LOHG-NSA), and a fibroma (LOHG-F) were obtained from a patient with multiple endocrine neoplasia type 1 (MEN1). Long-term cultures were established. Essential neurobiological properties of the cell lines were proven immunocytochemically and by electron microscopy. Molecular analysis of the germline DNA showed a 4 bp deletion in exon 3 of the MEN1 gene. Cytogenetic and CGH analyses of the tumors/tumor cell lines revealed diploidy and balanced and unbalanced structural aberrations different for each tumor. Chromosomes 6q21, 11q and 17q were most frequently involved in clonal structural aberrations.


Subject(s)
Adenoma/genetics , Carcinoid Tumor/genetics , Chromosomes, Human, Pair 11/genetics , DNA, Neoplasm , Fibroma/genetics , Genes, Tumor Suppressor , Insulinoma/genetics , Lung Neoplasms/genetics , Multiple Endocrine Neoplasia Type 1/genetics , Neoplasm Proteins/deficiency , Pancreatic Neoplasms/genetics , Parathyroid Neoplasms/genetics , Proto-Oncogene Proteins , Skin Neoplasms/genetics , Adenoma/pathology , Adrenal Gland Neoplasms/pathology , Adult , Aneuploidy , Carcinoid Tumor/pathology , Chromosome Aberrations , DNA Mutational Analysis , DNA, Neoplasm/genetics , Esophageal Neoplasms/pathology , Fibroma/pathology , Humans , Insulinoma/pathology , Leiomyoma/pathology , Lung Neoplasms/pathology , Male , Multiple Endocrine Neoplasia Type 1/pathology , Neoplasm Proteins/genetics , Neoplasm Proteins/physiology , Nucleic Acid Hybridization , Pancreatic Neoplasms/pathology , Parathyroid Neoplasms/pathology , Pheochromocytoma/pathology , Sequence Deletion , Skin Neoplasms/pathology , Tumor Cells, Cultured
7.
Exp Hematol ; 27(4): 673-81, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10210325

ABSTRACT

We recently investigated samples of pediatric B-cell precursor acute lymphoblastic leukemia (BCP-ALL) and normal bone marrow (BM). We found that leukemic blasts, compared to their physiologic counterpart cells, frequently display aberrant phenotypes with respect to levels of expression of certain antigens. Using multiparameter flow cytometry, these differences enabled us to trace leukemic cells admixed to normal BM, which suggested that this approach might be a useful strategy for minimal residual disease detection. In the present study, we used the same multiparameter approach ("comparative phenotype mapping") to prove that such quantitative phenotypic differences really exist between malignant and normal BCP when simultaneously present in the BM. We demonstrate this by five exemplary follow-up BM samples from patients with BCP-ALL, all of which showed phenotypically aberrant cells according to levels of expression of CD10, CD11a, CD19, CD34, CD44, or CD45RA, as well as according to altered orthogonal light scattering properties. We confirmed the leukemic nature of these cells by polymerase chain reaction-based detection of bcr1/abl transcripts, and of leukemia clone-specific immunoglobulin heavy chain rearrangements in only the suspicious cells when sorted by flow cytometry, but not in normal BCP or non-B cells. Comparative phenotype mapping thus allows one to distinguish between normal and leukemic cells, and we show that it may enable rapid, specific, and quantitative detection of residual/resurgent leukemia in BCP-ALL.


Subject(s)
Immunophenotyping , Neoplasm, Residual/diagnosis , Precursor B-Cell Lymphoblastic Leukemia-Lymphoma/diagnosis , Precursor B-Cell Lymphoblastic Leukemia-Lymphoma/genetics , Adolescent , Adult , Antigens, CD/metabolism , Bone Marrow Cells/metabolism , Bone Marrow Examination , Child , Child, Preschool , Female , Flow Cytometry , Follow-Up Studies , Humans , Male , Phenotype , Pilot Projects , Precursor B-Cell Lymphoblastic Leukemia-Lymphoma/immunology , Precursor B-Cell Lymphoblastic Leukemia-Lymphoma/pathology , Predictive Value of Tests
8.
Br J Haematol ; 102(4): 1069-80, 1998 Sep.
Article in English | MEDLINE | ID: mdl-9734660

ABSTRACT

It has been shown that granulocyte/macrophage colony stimulating factor (GM-CSF) is able to support myeloma cell propagation in cooperation with interleukin (IL)-6, the major growth factor for malignant plasma cells, although the biological mechanisms involved remain unknown. Therefore we investigated (i) the expression levels of the GM-CSF receptor (GM-CSFR) constituents in three malignant plasma cell lines and in native malignant plasma cells, (ii) the ability of the receptor to mediate common signalling pathways regulating proliferation and cell survival in malignant plasma cell lines, and (iii) the effects of GM-CSF on tumour cell biology. The GM-CSFRalpha subunit was detected in the malignant plasma cell lines RPMI-8226, MC/CAR, IM-9 as well as 6/6 native myeloma cell samples derived from the bone marrow of patients with overt disease. Furthermore, GM-CSFR expression was also detected in the CD19+ fraction from 2/3 bone marrow samples and 5/8 peripheral blood samples derived from patients with malignant plasma cell disorders, but not in the CD19+ fraction of peripheral blood from healthy donors. The expressed cytokine receptor alpha-subunit was able to constitute a functional signalling complex with the ubiquitously expressed GM-CSFRbeta subunit, as demonstrated by the fact that GM-CSF induced the p21-ras/mitogen-activated protein kinase (MAPK) signalling cascade in malignant plasma cell lines. Since this signalling cascade plays an essential role in the mediation of both proliferation and cell survival, we investigated the impact of GM-CSF on these two events. Application of GM-CSF led to an increase of DNA-synthesis in MC/CAR, IM-9 and RPMI-8226 cells. Furthermore, it increased longevity of these malignant plasma cell lines by reducing the rates of spontaneous apoptosis. We conclude that (i) the functional GM-CSFR is commonly expressed on malignant plasma cells and that (ii) GM-CSF promotes the clonal expansion of myeloma cells by inhibiting spontaneous apoptosis and promoting DNA synthesis.


Subject(s)
Apoptosis/physiology , Multiple Myeloma/metabolism , Plasma Cells/metabolism , Receptors, Granulocyte-Macrophage Colony-Stimulating Factor/metabolism , Aged , Apoptosis/drug effects , B-Lymphocytes/metabolism , Calcium-Calmodulin-Dependent Protein Kinases/metabolism , Cell Survival/physiology , Female , Gene Expression , Humans , Male , Middle Aged , Multiple Myeloma/pathology , Plasmacytoma/metabolism , Plasmacytoma/pathology , Polymerase Chain Reaction , Proto-Oncogene Proteins p21(ras)/metabolism , RNA, Messenger/genetics , Receptors, Granulocyte-Macrophage Colony-Stimulating Factor/genetics , Signal Transduction , Thymidine/metabolism , Tumor Cells, Cultured
9.
Blood ; 91(11): 4273-81, 1998 Jun 01.
Article in English | MEDLINE | ID: mdl-9596676

ABSTRACT

B-chronic lymphocytic leukemia (B-CLL) is characterized by cellular and humoral immune defects resulting in increased rates of infection and disturbed immune surveillance against cancer cells as well as by the expansion of slowly proliferating tumor cells. We found increased Fas receptor (FasR) expression in peripheral blood CD4+ and CD8+ cells of B-CLL patients compared with the equivalent cells of healthy donors. Although increased Fas receptor expression was significant in both T-lymphocytic subsets, only CD4+ cells from B-CLL patients underwent apoptosis after treatment with the agonistic Fas antibody CH11. In CD4+ cells of B-CLL patients, the Fas-sensitivity also correlated with a CD4+/CD8+ ratio below the lower threshold of healthy individuals (<1.0). By contrast, FasR expression in the CD19(+) fraction of B-CLL patients was downregulated compared with normal controls, and this was associated with an insensitivity to CH11-induced apoptosis. The B-CLL cell line EHEB as well as CD19(+) cells from B-CLL patients constitutively expressed Fas ligand (FasL). The FasL was functionally active, as the B-CLL cell line as well as T-cell-depleted CD19+ B-CLL fractions were able to kill target T-acute lymphatic leukemia (T-ALL) cells in vitro. This effect was inhibited by the antagonistic FasR-antibody ZB4, the neutralizing anti-FasL monoclonal antibody (MoAb) NOK-2 or by transfection of the caspase inhibitor crmA. These data point to the fact that expression of FasL on CD19(+) B-CLL cells, together with enhanced susceptibility of CD4+ T cells toward FasL-bearing effector cells, are causally linked to the relative reduction of CD4+ cells occurring during B-CLL progression. These findings could explain the inversion of the ratio of CD4+/CD8+ cell numbers, which may be causally linked to the immune deficiency observed in these patients and to the expansion of the neoplastic clone in B-CLL.


Subject(s)
CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/immunology , Leukemia, Lymphocytic, Chronic, B-Cell/immunology , Membrane Glycoproteins/immunology , fas Receptor/immunology , Aged , Cell Line , Down-Regulation , Fas Ligand Protein , Female , Flow Cytometry , Humans , Male , Middle Aged , T-Lymphocyte Subsets/immunology
10.
Gene ; 210(1): 71-8, 1998 Mar 27.
Article in English | MEDLINE | ID: mdl-9524226

ABSTRACT

The ETS gene family encodes a group of proteins that function as transcription factors under physiological conditions and, if aberrantly expressed, can lead to cellular transformation. ETS transcription factors are characterized by a unique conserved DNA binding domain. A subset of these proteins is rearranged with EWS in Ewing tumors (ET). We recently described a spectrum of ETS genes coexpressed with EWS-FLI1 in an ETcell line to define proteins that potentially compete in target site selection. We now report on the cloning and characterization of a novel ETS family member, ELFR, displaying 92% homology to ELF-1 in its DNA binding domain while diverging in the rest of the protein. ELFR expression was found in a very tissue restricted pattern with the highest abundancy in placenta. We also report the chromosomal assignment of ELFR and ELF-1 to Xq26 and 13q13, respectively, by means of fluorescence in-situ hybridization (FISH).


Subject(s)
Chromosome Mapping , DNA-Binding Proteins/chemistry , Sarcoma, Ewing/chemistry , Transcription Factors/chemistry , Amino Acid Sequence , Chromosomes, Human, Pair 13/genetics , Cloning, Molecular , DNA-Binding Proteins/genetics , Gene Expression Regulation, Neoplastic/genetics , Genes, Neoplasm/genetics , Genes, Reporter/genetics , Humans , In Situ Hybridization, Fluorescence , Molecular Sequence Data , RNA, Messenger/metabolism , Sequence Alignment , Sequence Analysis, DNA , Transcription Factors/genetics , Tumor Cells, Cultured , X Chromosome/genetics
11.
Leukemia ; 12(4): 474-81, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9557603

ABSTRACT

The detailed definition of karyotype changes associated with hyperdiploid acute lymphoblastic leukemia (ALL) is a precondition for their exploitation in minimal residual disease studies with fluorescence in situ hybridization analysis (FISH). In addition, certain karyotype patterns may have different prognostic implications. We have therefore used comparative genomic hybridization (CGH) to analyze the quantitative karyotype abnormalities in 14 cases of hyperdiploid ALL and correlated the results with those obtained by flow cytometry and conventional cytogenetic analyses. Despite an overall good agreement between the karyotypes obtained by classical banding techniques and CGH, we came across at least one karyotype discrepancy per case. Clarification of the discordant findings with fluorescence in situ hybridization (FISH) showed that all stem lines had been correctly defined by CGH. In eight cases, however, cytogenetic analyses revealed structural abnormalities that were undetectable by CGH. The other discrepancies were mainly due to a cytogenetic misinterpretation of similar sized and shaped chromosomes. Based on these findings we present a new diagnostic strategy for childhood ALL that includes flow cytometry and classical cytogenetics as well as CGH for the analysis of aneuploid cases and FISH to resolve the unavoidable discrepancies.


Subject(s)
Diploidy , Nucleic Acid Hybridization/methods , Precursor Cell Lymphoblastic Leukemia-Lymphoma/diagnosis , Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics , Adolescent , Child , Child, Preschool , Chromosome Banding , DNA, Neoplasm/analysis , DNA, Neoplasm/genetics , Female , Flow Cytometry , Humans , In Situ Hybridization, Fluorescence/methods , Karyotyping , Male
12.
J Neurocytol ; 27(3): 175-86, 1998 Mar.
Article in English | MEDLINE | ID: mdl-10640177

ABSTRACT

Pheochromocytomas are rare tumours, with an incidence of 1-2 per million which arise from chromaffin cells of the adrenal medulla. They occur sporadically or as part of dominantly inherited cancer syndromes like multiple endocrine neoplasia 2 (MEN2A and 2B) and others. Continuous cell lines, not available so far, are essential tools for studies in these tumours. A continuous cell line (KNA) was established from a sporadic pheochromocytoma of the right adrenal gland of a 73-year-old woman. The KNA cells grow as suspensions of spheroids and show the morphological and immunocytochemical characteristics of neuronal chromaffin cells, such as neuroendocrine granules, and positive reactions to chromogranin- and related peptide-, neuron specific enolase and vasoactive intestinal peptide antibodies. Neurite-like processes are formed after addition of nerve growth factor. Chromosomal analyses revealed a diploid (46,XX,n = 50) to hypodiploid (43-45,XX,n = 15) karyotype. In hypodiploid metaphases most frequently #19, #17, #21 and #22 were missing. Chromosome arms 1p and 4q showed apparently consistent interstitial deletions: 6q, 8q, 13q and 22q showed clonal interstitial deletions. The cell line shows a heterozygous sequence variant TGC (cysteine) to TGG (tryptophan) in codon 611 in exon 10 of the RET proto-oncogene. So far, PC-12, a rat adrenal pheochromocytoma, has been the only continuous pheochromocytoma cell line available. KNA represents the first report on a human continuous pheochromocytoma cell line, the first report of structural chromosome aberrations in pheochromocytomas and the first report of a RET mutation TGC to TGG in exon 10 of the RET proto-oncogene in a sporadic pheochromocytoma.


Subject(s)
Adrenal Gland Neoplasms/pathology , Drosophila Proteins , Pheochromocytoma/pathology , Tumor Cells, Cultured , Adrenal Gland Neoplasms/genetics , Adrenal Gland Neoplasms/metabolism , Aged , Amino Acid Substitution , Animals , Biomarkers, Tumor/analysis , Catecholamines/analysis , Chromogranin A , Chromogranins/analysis , Chromosome Aberrations , Cytoplasmic Granules/chemistry , Cytoplasmic Granules/ultrastructure , Dopamine beta-Hydroxylase/analysis , Exons/genetics , Female , Humans , Male , Mice , Mice, Nude , Neoplasm Proteins/genetics , Neoplasm Transplantation , Nerve Growth Factor/pharmacology , Neuropeptides/analysis , Pheochromocytoma/genetics , Pheochromocytoma/metabolism , Ploidies , Point Mutation , Proto-Oncogene Mas , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins c-ret , Proto-Oncogenes , Receptor Protein-Tyrosine Kinases/genetics , Tumor Cells, Cultured/chemistry , Tumor Cells, Cultured/drug effects , Tumor Cells, Cultured/transplantation , Tumor Cells, Cultured/ultrastructure
13.
Oncogene ; 14(2): 195-202, 1997 Jan 16.
Article in English | MEDLINE | ID: mdl-9010221

ABSTRACT

We report the cloning and characterization of the entire AFX gene which fuses to MLL in acute leukemias with a t(X;ll)(q13;q23). AFX consists of two exons and encodes for a protein of 501 amino acids. We found that normal B- and T-cells contain similar levels of AFX mRNA and that both the MLL/AFX as well as the AFX/MLL fusion transcripts are present in the cell line and the ANLL sample with a t(X;11)(q13;q23). The single intron of the AFX gene consists of 3706 nucleotides. It contains five simple sequence repeats with lengths of at least 12 bps, a chi-like octamer sequence (GCA/TGGA/TGG) and several immunoglobulin heptamer-like sequences (GATAGTG) that are distributed throughout the entire AFX intron sequence. In the KARPAS 45 cell line the breakpoints occur at nucleotides 2913/2914 of the AFX intron and at nucleotides 4900/4901 of the breakpoint cluster region of the MLL gene. The AFX protein belongs to the forkhead protein family. It is highly homologous to the human FKHR protein, the gene of which is disrupted by the t(2;13)(q35;q14), a chromosome rearrangement characteristic of alveolar rhabdomyosarcomas. It is noteworthy that the t(X;11)(q13;q23) in the KARPAS 45 cell line and in one acute nonlymphoblastic leukemia (ANLL) disrupts the forkhead domain of the AFX protein exactly at the same amino acids as does the t(2;13)(q35;q14) in case of the FKHR protein. In addition, the 5'-part of the AFX protein contains a conserved hexapeptide motif (QIYEWM) that is homologous to the functionally important conserved hexapeptide QIYPWM upstream of the homeobox domain in Hox proteins. This motif mediates the co-operative DNA binding of Pbx family members and Hox proteins and, therefore, plays an important role in physiologic and oncogenic processes. In acute leukemias with a t(X;11)(q13;q23), this hexapeptide motif is separated from the remaining forkhead domain within the AFX protein. The predicted amino acid sequence of AFX differs significantly from the partial AFX protein sequence published previously (Genes, Chromosomes and Cancer, 1994, 11, 79-84). This discrepancy can be explained by the occurrence of two sequencing errors in the earlier work at nucleotide number 783 and 844 (loss of a cytosine residue or guanosine residue, respectively) that lead to two reading frame shifts.


Subject(s)
Blood Proteins/genetics , Chromosomes, Human, Pair 11 , Genes/genetics , Introns/genetics , Leukemia/genetics , Proto-Oncogenes , Transcription Factors , Translocation, Genetic , X Chromosome , Acute Disease , Amino Acid Sequence , Base Sequence , Cell Cycle Proteins , Cloning, Molecular , DNA-Binding Proteins/metabolism , Forkhead Transcription Factors , Histone-Lysine N-Methyltransferase , Humans , Leukemia-Lymphoma, Adult T-Cell/genetics , Molecular Sequence Data , Myeloid-Lymphoid Leukemia Protein , Tumor Cells, Cultured
14.
Hum Mol Genet ; 4(10): 1945-52, 1995 Oct.
Article in English | MEDLINE | ID: mdl-8595419

ABSTRACT

The human IGF2R gene has been reported to be either biallelically or very rarely monoallelically expressed, in contrast to the maternally expressed mouse counterpart. We describe here an analysis of the 5' portion of the human IGF2R gene and show that it contains a maternally methylated CpG island in the second intron. A similar maternally methylated intronic element has been proposed to be the imprinting box for the mouse gene and although the relevance of this element has yet to be directly demonstrated, methylation has been reported to be essential to maintain allele-specific expression of imprinted genes. Allelic expression analysis of human IGF2R in 70 lymphoblastoid cell lines identified only one line showing monoallelic expression. Thus, in this tissue monoparental methylation of the IGF2R gene does not correlate with allele-specific expression. We also confirm here that the human IGF2R gene is located in an asynchronously replicating chromosomal region, as are all other imprinted genes so far analyzed. The mouse and human IGF2R intronic CpG islands both contain numerous large direct repeats that are methylated following maternal, but not paternal, transmittance. Thus features that attract maternal-specific methylation are conserved between the mouse and human genes. Since these intronic CpG islands share organizational rather than sequence homology, this suggests that secondary DNA structure may play a role in attracting a maternal methylation imprint.


Subject(s)
Promoter Regions, Genetic , Receptor, IGF Type 2/genetics , Alleles , Animals , Base Sequence , Cell Line , Conserved Sequence , DNA/chemistry , DNA Primers , DNA Replication , Dinucleoside Phosphates , Gene Expression , Humans , Imprinting, Psychological , Introns , Methylation , Mice , Molecular Sequence Data , Polymerase Chain Reaction , Polymorphism, Genetic , Receptor, IGF Type 2/biosynthesis , Repetitive Sequences, Nucleic Acid , Restriction Mapping
15.
Genomics ; 29(3): 607-15, 1995 Oct 10.
Article in English | MEDLINE | ID: mdl-8575752

ABSTRACT

In an approach to mapping physically the most distal 30 Mb of human chromosome 1p, region-specific clone libraries were generated by microdissection and microcloning. PFGE blot hybridization of single or low-copy microclones against rare-cutter digests of genomic DNA revealed physical linkage for groups of markers. Supplementary PFGE analysis of 31 1p36-p35-specific probes for genetically mapped loci established a total of 15 grouped sets, consisting of altogether 69 markers. Twelve of the grouped sets were located in 1pter-p36.12, as revealed by microcell hybrid mapping; the remaining three were localized proximal to 1p36.12. Regional assignment and ordering of most grouped sets was achieved either by evaluating the included genetic markers or by fluorescence in situ hybridization of representative probes. The genomic extent of individual grouped sets encompassed between 1100 and 2100 kb, covering a total of approximately 22 Mb of the distal chromosome 1p region. One particular grouped set was shown to contain seven polymorphic marker loci that were previously suggested to be distributed across the entire 1pter-p35 region. The increase in the number of hybridization marker probes in 1p36 and their physical mapping is expected to facilitate positional cloning experiments in this region; in particular, the construction of clone contigs may be greatly facilitated.


Subject(s)
Chromosomes, Human, Pair 1 , Blotting, Southern , Cell Line , Chromosome Mapping , Cloning, Molecular , DNA/chemistry , DNA/isolation & purification , DNA Probes , Gene Library , Genetic Linkage , Genetic Markers , Humans , In Situ Hybridization, Fluorescence , Karyotyping , Restriction Mapping
16.
Blood ; 86(6): 2371-8, 1995 Sep 15.
Article in English | MEDLINE | ID: mdl-7662984

ABSTRACT

The translocation t(9;22) in chronic myeloid leukemia (CML) generates a bcr-abl fusion gene that codes for an aberrant chimeric mRNA. Cell lines established from CML patients in blast crisis show higher expression of this aberrant bcr-abl transcript than cells from patients in chronic phase of the disease. This observation provided the stimulus to investigate whether increased expression of the aberrant bcr-abl fusion transcript is critical to the progression of CML from chronic phase to blast crisis. We have monitored the bcr-abl mRNA expression in 25 patients by serial quantitative polymerase chain reaction analyses during a follow-up period of 12 to 156 months after diagnosis, with a median observation time of 28 months. In all patients who have shown disease progression to accelerated phase (n = 4) or blast crisis (n = 7), an increase in bcr-abl mRNA expression was detected up to 16 months before laboratory or clinical parameters showed phenotypic transformation of the malignant clone. To investigate whether the elevated levels of bcr-abl mRNA reflected an increase in the proportion of leukemic cells in the samples analyzed or primarily enhanced transcriptional activity of the bcr-abl fusion gene, we performed quantitative analyses of the bcr-abl gene at the DNA level and of the Ph chromosome at the cytogenetic level and compared these data with steady-state bcr-abl mRNA levels. We show that increased levels of the bcr-abl transcript did not reflect increased proportions of leukemic cells but elevated steady-state levels of the chimeric mRNA in the malignant cells before disease progression. Therefore, our data strongly suggest that an increase of the chimeric mRNA expression in the leukemic cells precedes the phenotypic transformation of the malignant clone.


Subject(s)
Fusion Proteins, bcr-abl/genetics , Gene Expression Regulation, Leukemic , Leukemia, Myeloid, Chronic-Phase/genetics , RNA, Messenger/biosynthesis , Adult , Aged , Blast Crisis/genetics , Blast Crisis/pathology , Child, Preschool , Disease Progression , Follow-Up Studies , Fusion Proteins, bcr-abl/biosynthesis , Humans , Immunologic Factors/pharmacology , Immunologic Factors/therapeutic use , Interferon-alpha/pharmacology , Interferon-alpha/therapeutic use , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/genetics , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/pathology , Leukemia, Myeloid, Accelerated Phase/genetics , Leukemia, Myeloid, Accelerated Phase/pathology , Leukemia, Myeloid, Chronic-Phase/pathology , Leukemia, Myeloid, Chronic-Phase/therapy , Middle Aged , Polymerase Chain Reaction , RNA, Messenger/genetics
17.
Leukemia ; 9(8): 1353-60, 1995 Aug.
Article in English | MEDLINE | ID: mdl-7643624

ABSTRACT

Interferon-alpha (IFN-alpha) has become a widely used treatment modality in chronic myelogenous leukemia (CML) and was shown to induce complete hematologic responses in about 70% of the patients. In a minority of cases, complete suppression of the Philadelphia (Ph)-positive clone has been observed by cytogenetic investigation or by Southern blot analysis. In most instances, however, analyses by the highly sensitive two-step polymerase chain reaction (PCR) reveal the presence of residual leukemic cells despite continuous treatment. Since PCR positivity has not been associated with an increased risk of disease recurrence, the monitoring of cells carrying the characteristic BCR/ABL rearrangement by qualitative PCR may not facilitate early identification of patients who are likely to relapse. We have therefore employed a quantitative PCR technique to monitor the BCR/ABL mRNA expression levels during the course of treatment in an attempt to assess the response to IFN-alpha at the molecular level and to provide a basis for early detection of progressive disease. Twenty CML patients who received therapy with IFN-alpha in first chronic phase of the disease were enrolled in the study. In addition, we have monitored two CML patients treated with IFN-alpha for relapse after bone marrow transplantation. Thirteen patients who displayed decreasing, constant or fluctuating levels of BCR/ABL expression during an observation period of up to 4 years (mean 25 months) have remained in hematologic remission. Two patients showed an elevation in the marker gene expression upon discontinuation of treatment, but no further increase in BCR/ABL mRNA has been observed after reinitiation of therapy with IFN, and the patients have remained in hematologic remission. In seven patients, quantitative PCR (Q-PCR) analyses revealed increasing expression of the chimeric gene during treatment with IFN-alpha. In all seven cases, the detection of elevated BCR/ABL transcripts by quantitative PCR preceded signs of hematologic or cytogenetic disease progression by up to 8 months (median 6 months). Our data show that quantitative PCR analysis facilitates the monitoring of the response to IFN-alpha therapy and provides an effective diagnostic tool for the timely detection of recurrent disease. The employment of this technique greatly enhances the diagnostic possibilities in the management of chronic myelogenous leukemia.


Subject(s)
Interferon Type I/therapeutic use , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/diagnosis , Neoplasm, Residual/diagnosis , Polymerase Chain Reaction/methods , Adult , Aged , Base Sequence , Child, Preschool , DNA Primers/chemistry , Female , Fusion Proteins, bcr-abl/genetics , Gene Expression , Humans , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/drug therapy , Male , Middle Aged , Molecular Sequence Data , RNA, Messenger/genetics , RNA, Neoplasm/genetics , Recombinant Proteins
18.
Genet Anal Tech Appl ; 11(5-6): 140-7, 1994.
Article in English | MEDLINE | ID: mdl-7710779

ABSTRACT

A series of 80 microclone probes derived from the chromosomal region 1p36 was used to isolate corresponding clones from the ICRF human P1 library (see Francis et al., this issue). Hybridization screenings were performed using probe pools on high-density filter grids. A total of 87 P1 clones specific for 1p36 were isolated. This large-scale approach allowed a detailed evaluation of the complexity, quality, and utility of this library. The isolated P1 clones were used both for size determination by pulsed-field gel electrophoresis and as probes for fluorescence in situ hybridization (FISH) analysis. FISH of P1 clones is shown to be both easy and efficient to perform on metaphase chromosomes and interphase nuclei. This observation is expected to reveal new avenues for diagnosis of disease-related chromosomal changes. The use of P1 clones as a tool in clinical and tumor interphase cytogenetics is discussed and compared with FISH data of other long insert clones such as cosmids and YAC clones.


Subject(s)
Bacteriophage P1/genetics , Chromosomes, Human, Pair 1 , Cloning, Molecular/methods , Genetic Vectors/genetics , In Situ Hybridization, Fluorescence , Bacteriophage P1/isolation & purification , Chromosomes, Human , DNA Probes , Gene Library , Genetic Vectors/isolation & purification , Humans
19.
Leukemia ; 7(12): 2054-6, 1993 Dec.
Article in English | MEDLINE | ID: mdl-8255105

ABSTRACT

The translocation t(1;19)(q23;p13) in pediatric patients with acute lymphoblastic leukemia (ALL) was demonstrated in early reports to result in a consistent fusion between the E2A and PBX1 gene sequences and in the expression of a uniform, chimeric E2A/PBX1 mRNA with transforming potential. More recent observations suggested that cytogenetically identical t(1;19) translocations can result in the transcription of different mRNA species and that expression of the E2A/PBX1 message may be restricted to patients with the t(1;19) who display a pre-B phenotype of ALL. To further assess the correlation between the immunologic subtypes of the disease and specific genetic alterations, we have performed cytogenetic and molecular analyses in 221 children with B-lineage ALL. Expression of the chimeric E2A/PBX1 message was detected in 21 patients. Out of 14 patients, in whom cytoplasmic immunoglobulin (cig) analyses were available, no less than four had a cig- B-cell precursor ALL, whereas 10 displayed a cig+ B-ALL immunophenotype. These findings are at variance with a recent report in which expression of the E2A/PBX1 message was linked exclusively to a subset of patients who displayed a cig+ pre-B-cell precursor phenotype of ALL. In seven cases diagnosed before 1986, cig analyses were not available, and consequently E2A/PBX1 expression could not be correlated to a particular immunological subtype of B-cell precursor ALL. Our results have important implications for the detection of residual disease in pediatric patients where expression of the typical E2A/PBX1 mRNA may occur both in cig+ (pre-B) and cig- (early pre-B) immunologic subtypes of ALL.


Subject(s)
Oncogene Proteins, Fusion/genetics , Precursor B-Cell Lymphoblastic Leukemia-Lymphoma/genetics , Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics , Transcription, Genetic , Child , Chromosomes, Human, Pair 1 , Chromosomes, Human, Pair 19 , Cytoplasm/immunology , Gene Expression , Humans , Immunoglobulin Heavy Chains/metabolism , Immunophenotyping , Precursor B-Cell Lymphoblastic Leukemia-Lymphoma/classification , Precursor B-Cell Lymphoblastic Leukemia-Lymphoma/immunology , Precursor Cell Lymphoblastic Leukemia-Lymphoma/classification , Precursor Cell Lymphoblastic Leukemia-Lymphoma/immunology , RNA, Messenger/metabolism , Translocation, Genetic
20.
Leukemia ; 7(11): 1766-72, 1993 Nov.
Article in English | MEDLINE | ID: mdl-8231244

ABSTRACT

We performed a two-step polymerase chain reaction (PCR) to detect bcr-abl-specific mRNA in 440 peripheral blood and/or bone marrow samples of 30 chronic myeloid leukemia (CML) patients (mean 15, range 2-50 samples) following non T-cell-depleted allogeneic (n = 28) or syngeneic (n = 2) bone marrow transplantation (BMT). Median follow-up after BMT is 40 months (range 2-116 months), the median observation time 29 months (range 2-40 months). In 15 patients (50%), bcr-abl-specific mRNA could be detected following BMT. Bcr-abl positivity was rare in patients who were in hematological remission for at least 40 months (2/11). In five patients, PCR positivity was observed only once; all five patients are in complete hematological remission. Ten patients showed bcr-abl specific mRNA in two or more consecutive samples. Hematological relapse occurred in five of the latter patients. Bcr-abl positivity preceded hematological relapse in all cases. Bcr-abl positivity was detected more frequently in patients without graft-versus-host disease (GVHD) (11/15), than in patients with GVHD (4/15) (p < 0.02). Our data indicate that transient bcr-abl positivity is not usually followed by hematological relapse, while patients, who are positive in serial samples have a high risk of relapse.


Subject(s)
Bone Marrow Transplantation , Fusion Proteins, bcr-abl/genetics , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/genetics , RNA, Messenger/analysis , RNA, Neoplasm/analysis , Adult , Female , Graft vs Host Disease , Humans , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/therapy , Male , Middle Aged , Polymerase Chain Reaction , Recurrence , Transplantation, Homologous , Transplantation, Isogeneic
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