Niche partitioning of intertidal seagrasses: evidence of the influence of substrate temperature.

The influence of soil temperature on rhizome depths of four intertidal seagrass species was investigated in central Queensland, Australia. We postulated that certain intertidal seagrass species are soil temperature-sensitive and vertically stratify rhizome depths. Below-ground vertical stratification of intertidal seagrass rhizome depths was analysed based upon microclimate (soil temperature) and microhabitat (soil type). Soil temperature profiles exhibited heat transfer from surface layers to depth that varied by microhabitat, with vertical stratification of rhizome depths between species. Halodule uninervis rhizomes maintain a narrow median soil temperature envelope; compensating for high surface temperatures by occupying deeper, cooler soil substrates. Halophila decipiens, Halophila ovalis and Zostera muelleri rhizomes are shallow-rooted and exposed to fluctuating temperatures, with broader median temperature envelopes. Halodule uninervis appears to be a niche specialist, with the two Halophila species considered as generalist niche usage species. The implications of niche use based upon soil temperature profiles and rhizome rooting depths are discussed in the context of species' thermal tolerances and below-ground biomass O2 demand associated with respiration and maintenance of oxic microshields. This preliminary evidence suggests that soil temperature interaction with rhizome rooting depths may be a factor that influences the distribution of intertidal seagrasses.

Aquaculture and urban marine structures facilitate native and non-indigenous species transfer through generation and accumulation of marine debris.

Both the invasion of non-indigenous marine species (NIMS) and the generation and accumulation of anthropogenic marine debris (AMD) are pervasive problems in coastal urban ecosystems. The biosecurity risks associated with AMD rafting NIMS have been described, but the role of aquaculture derived AMD has not yet been investigated as a biosecurity vector and pathway. This preliminary study targeted 27 beaches along the Coromandel Peninsula, New Zealand, collecting debris from belt transects. Plastic (specifically plastic rope) was the dominant AMD present on beaches. The most common biofouling taxa were hydroids, bryozoans, algae and polychaetes, with one NIMS pest species, Sabella spallanzanii, detected fouling plastic rope. Our findings demonstrate that aquaculture is an AMD (plastic rope) generating activity that creates biosecurity risk by enhancing the spread of NIMS. The rafting of S. spallanzanii on AMD generated at aquaculture facilities is currently an unmanaged pathway within New Zealand that needs attention.

Incorporation of deuterium oxide in MCF-7 cells to shed further mechanistic insights into benzo[a]pyrene-induced low-dose effects discriminated by ATR-FTIR spectroscopy.

This study evaluated the potential of deuteration to enhance the mechanistic information obtainable by biospectroscopy techniques in biological-cell models. These techniques were previously demonstrated to identify low-dose effects (≤nM) induced by test agents; this is of critical interest in terms of developing novel approaches to monitor environmentally-induced cell alterations. Attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy was coupled with multivariate analysis to characterize a low-dose (10(-10) M) compared to a high-dose (10(-6) M) exposure of benzo[a]pyrene (B[a]P) in oestrogen-responsive MCF-7 cells; these results were used as a positive control for spectroscopic detection of B[a]P-induced effects. Deuterium oxide (D2O) was then applied as part of a fixative solution and/or at low levels incorporated into growth medium prior to ATR-FTIR spectrochemical analysis. The application of D2O as an alternative solvent in spectroscopy is widespread, but D2O has never before been applied to biospectroscopic analysis of in vitro toxicology assays. This allowed comparison between deuterated- and typically-derived IR spectra, facilitating significant insights into the effects of deuteration, and suggested that the addition of D2O to biospectroscopy assays could improve understanding of low-dose effects.

Identification of benzo[a]pyrene-induced cell cycle-associated alterations in MCF-7 cells using infrared spectroscopy with computational analysis.

Chemical contaminants, such as benzo[a]pyrene (B[a]P), may modulate transcriptional responses in cells via the activation of aryl hydrocarbon receptor (AhR) or through responses to DNA damage following adduct formation. Attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy can be employed in a non-destructive fashion to interrogate the biochemical signature of cells via generation of infrared (IR) spectra. By applying to generated spectral datasets subsequent computational approaches such as principal component analysis plus linear discriminant analysis (PCA-LDA), derived data reduction is achieved to facilitate the visualization of wavenumber-related alterations in target cells. Discriminating spectral variables might be associated with lipid or glycogen content, conformational protein changes and phosphorylation, and structural alterations in DNA/RNA. Using this approach, we investigated the dose-related effects of B[a]P in MCF-7 cells concentrated in S- or G0/G1-phase. Our findings identified that in PCA-LDA scores plots a clear segregation of IR spectra was evident, with the major spectral alterations associated with DNA/RNA, secondary protein structure and lipid. Dose-related effects were observed and even with exposures as low as 10⁻9 M B[a]P, significant (P ≤ 0.001) separation of B[a]P-treated vs. vehicle control cells was noted. ATR-FTIR spectroscopy with computational analysis is a novel approach to identify the effects of environmental contaminants in target cells.

Diagnostic segregation of human brain tumours using Fourier-transform infrared and/or Raman spectroscopy coupled with discriminant analysis.

The most common initial treatment received by patients with a brain tumour is surgical removal of the growth. Precise histopathological diagnosis of brain tumours is to some extent subjective. Furthermore, currently available diagnostic imaging techniques to delineate the excision border during cytoreductive surgery lack the required spatial precision to aid surgeons. We set out to determine whether infrared (IR) and/or Raman spectroscopy combined with multivariate analysis could be applied to discriminate between normal brain tissue and different tumour types (meningioma, glioma and brain metastasis) based on the unique spectral "fingerprints" of their biochemical composition. Formalin-fixed paraffin-embedded tissue blocks of normal brain and different brain tumours were de-waxed, mounted on low-E slides and desiccated before being analyzed using attenuated total reflection Fourier-transform IR (ATR-FTIR) and Raman spectroscopy. ATR-FTIR spectroscopy showed a clear segregation between normal and different tumour subtypes. Discrimination of tumour classes was also apparent with Raman spectroscopy. Further analysis of spectral data revealed changes in brain biochemical structure associated with different tumours. Decreased tentatively-assigned lipid-to-protein ratio was associated with increased tumour progression. Alteration in cholesterol esters-to-phenylalanine ratio was evident in grade IV glioma and metastatic tumours. The current study indicates that IR and/or Raman spectroscopy have the potential to provide a novel diagnostic approach in the accurate diagnosis of brain tumours and have potential for application in intra-operative diagnosis.