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1.
Epidemiol Infect ; 146(14): 1785-1792, 2018 10.
Article in English | MEDLINE | ID: mdl-30019657

ABSTRACT

Current knowledge of methicillin-resistant Staphylococcus aureus (MRSA) colonisation in relation to epidemiological characteristics is incomplete. We conducted a cross-sectional study at an acute-care tertiary infectious diseases hospital of MRSA isolates identified through routine surveillance from January 2009 to December 2011. We randomly selected 205 MRSA isolates (119 inpatients) from 798 isolates (427 inpatients) for molecular profiling using multilocus sequence typing. Multilevel multinomial logistic regression was used to estimate odds ratio (OR) assessing the predilection of MRSA strains for anatomic sites, and associations of strains with human immunodeficiency virus (HIV) infection. The most frequent sequence types (STs) were 239, 22 and 45. The proportion of ST22 increased over the sampling period, replacing ST239 as the dominant lineage. However, ST239 remained the most prevalent among HIV-seropositive individuals who were six times more likely to be colonised with this strain than non-HIV patients (adjusted OR (aOR) 6.44, 95% confidence interval (CI) 1.94-21.36). ST45 was >24 times more likely to be associated with perianal colonisation than in the nares, axillae and groin sites (aOR 24.20, 95% CI 1.45-403.26). This study underlines the clonal replacement of MRSA in Singapore as previously reported but revealed, in addition, key strain differences between HIV-infected and non-infected individuals hospitalised in the same environment.


Subject(s)
HIV Seropositivity/epidemiology , Methicillin-Resistant Staphylococcus aureus/physiology , Staphylococcal Infections/epidemiology , Adult , Aged , Aged, 80 and over , Anti-Bacterial Agents/pharmacology , Cross-Sectional Studies , Female , HIV Seropositivity/virology , Humans , Male , Methicillin/pharmacology , Middle Aged , Multilocus Sequence Typing , Singapore/epidemiology , Staphylococcal Infections/microbiology , Tertiary Care Centers , Young Adult
2.
Vaccine ; 30(24): 3503-14, 2012 May 21.
Article in English | MEDLINE | ID: mdl-22475858

ABSTRACT

BACKGROUND: Streptococcus pneumoniae is a major cause of bacterial infections resulting in significant morbidity and mortality worldwide. Currently, up to 13 serotypes are included in pneumococcal conjugate vaccines (PCVs). However, the serotype formulation of these vaccines was initially designed to protect children against serotypes most commonly causing invasive disease in North America, and may not reflect the serotype distribution across the world. Data regarding pneumococcal epidemiology from the other parts of the world, in particular South East Asia, has not been reviewed. METHODS: This systematic literature review analyses published serotype data regarding S. pneumoniae isolates from South East Asian countries (defined as countries belonging to the Association of South East Asian Nations, ASEAN): Brunei, Cambodia, Indonesia, Laos, Malaysia, Myanmar, Philippines, Singapore, Thailand and Vietnam up to 3rd of March 2012. RESULTS: Analysis of data from six ASEAN countries, from which information on pneumococcal serotypes was available, showed that the most common disease causing serotypes (in rank order) were 19F, 23F, 14, 6B, 1, 19A and 3. Serotype distribution of pneumococcal isolates was similar across the ASEAN region. Serotype level data was more commonly reported for pneumococcal isolates causing invasive pneumococcal disease than for those from non-invasive disease. Studies from Malaysia, Thailand and Singapore contributed the largest proportion of pneumococcal isolates, and serotype data, when compared to other ASEAN countries. CONCLUSION: This review demonstrates that the majority of IPD causing serotypes in SE Asia are included in currently licensed PCVs. However, PCV's are included in the routine childhood immunisation schedule of only one of the ten countries included in this analysis. Our findings demonstrate the scarcity of information available on serotype prevalence and distribution of pneumococci in SE Asia.


Subject(s)
Pneumococcal Infections/epidemiology , Pneumococcal Infections/microbiology , Streptococcus pneumoniae/classification , Streptococcus pneumoniae/isolation & purification , Asia, Southeastern/epidemiology , Health Policy , Humans , Immunization Schedule , Pneumococcal Infections/prevention & control , Pneumococcal Vaccines/administration & dosage , Pneumococcal Vaccines/immunology , Prevalence , Serotyping
3.
Genes Immun ; 11(3): 232-8, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20237496

ABSTRACT

The immune response to hepatitis B vaccination differs greatly among individuals, with 5-10% of healthy people failing to produce protective levels of antibodies. Several factors have been implicated in determining this response, chiefly individual genetic variation and age. Aiming to identify genes involved in the response to hepatitis B vaccination, a two-stage investigation of 6091 single-nucleotide polymorphisms (SNPs) in 914 immune genes was performed in an Indonesian cohort of 981 individuals showing normal levels of anti-HBs versus 665 individuals displaying undetectable levels of anti-HBs 18 months after initial dose of the vaccine. Of 275 SNPs identified in the first stage (476 normal/372 nonresponders) with P<0.05, significant associations were replicated for 25 polymorphisms in 15 genes (503 normal/295 nonresponders). We validated previous findings (HLA-DRA, rs5000563, P-value combined=5.57 x 10(-10); OR (95%CI)=0.61 (0.52-0.71)). In addition, we detected a new association outside of the human leukocyte antigen loci region that passed correction for multiple testing. This SNP is in the 3' downstream region of FOXP1, a transcription factor involved in B-cell development (P-value combined=9.2 x 10(-6); OR (95%CI)=1.38 (1.2-1.6)).These findings might help to understand the biological reasons behind vaccine failure and other aspects of variation in the immune responses of healthy individuals.


Subject(s)
Genome-Wide Association Study , Hepatitis B Antibodies/immunology , Hepatitis B Vaccines/immunology , Immunity/genetics , Adolescent , Adult , Aged , Child , Child, Preschool , Female , Genotype , Haplotypes , Hepatitis B Vaccines/administration & dosage , Humans , Male , Middle Aged , Polymorphism, Single Nucleotide , Vaccination , Young Adult
4.
Epidemiol Infect ; 130(3): 413-8, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12825725

ABSTRACT

To quantify the host genetic component of meningococcal disease (MD) susceptibility, the sibling risk ratio (lambdaS) was calculated as the ratio of observed MD cases among 845 siblings of 443 UK Caucasian cases to that expected, calculated from age-calendar year specific rates for England and Wales. Twenty-seven siblings contracted MD compared with an expected 0.89, generating a lambdaS value of 30.3. Overestimation of lambdaS due to Neisseria meningitidis exposure was minimized by excluding siblings with MD onset within set time points of the index case. Irrespective of whether siblings contracted MD more than 1, 3, 6, 9 or 12 months after the index case, the lambdaS varied slightly (lambdaS range: 8.2-11.9), suggesting that host genetic factors may contribute approximately one third of the total lambdaS. Social class distribution did not differ between MD cases and the general population of England and Wales. This study is the first to calculate lambdaS for MD and establishes that susceptibility to MD has a significant host genetic component.


Subject(s)
Genetic Predisposition to Disease/epidemiology , Meningococcal Infections/epidemiology , Meningococcal Infections/genetics , White People , Adolescent , Adult , Child , Child, Preschool , England/epidemiology , Humans , Infant , Infant, Newborn , Risk , Siblings , Socioeconomic Factors , Wales/epidemiology
5.
Pediatr Infect Dis J ; 18(10): 893-6, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10530586

ABSTRACT

BACKGROUND: One of the most serious complications of meningococcal disease is the syndrome of purpura fulminans, which is characterized by intravascular thrombosis and hemorrhagic infarction of skin, limbs and digits. The reasons why some patients with meningococcal disease develop purpura fulminans while others have minimal thrombotic and skin involvement despite having profound septic shock are not yet understood. The Factor V Leiden mutation (FV(L)) is associated with thrombotic events, and we hypothesized that children carrying FV(L) who develop meningococcal disease may be at increased risk of purpura fulminans. METHODS: We determined the FV(L) genotype by PCR and restriction enzyme digestion (Mnl1) in 259 children with meningococcal disease and 80 healthy controls. In addition 79 parents of children with fatal meningococcal disease were studied. RESULTS: There was no significant increase in the frequency of FV(L) in patients with meningococcal disease (10%) as compared with healthy controls (9%) or with the parents of children who died of meningococcal disease (12%). Although the mortality was not increased in patients heterozygous for FV(L), they had increased complications of purpura fulminans, as assessed by requirement for skin grafting, referral to plastic surgeon and/or amputation. Among survivors 5 of 24 (21%) of those heterozygous for FV(L) had complications, compared with 14 of 233 (7%) who were wild type [P < 0.03; relative risk, 3.1 (95% confidence intervals, 1.2 to 7.9)]. CONCLUSIONS: FV(L) exacerbates purpura fulminans in meningococcal disease but does not have a significant effect on mortality.


Subject(s)
Factor V/genetics , IgA Vasculitis/etiology , IgA Vasculitis/genetics , Meningococcal Infections/complications , Child , Disseminated Intravascular Coagulation/etiology , Disseminated Intravascular Coagulation/genetics , Disseminated Intravascular Coagulation/mortality , Genotype , Heterozygote , Humans , IgA Vasculitis/mortality , Meningococcal Infections/genetics , Meningococcal Infections/mortality , Mutation , Risk Factors
6.
Lancet ; 354(9178): 556-60, 1999 Aug 14.
Article in English | MEDLINE | ID: mdl-10470700

ABSTRACT

BACKGROUND: Intravascular coagulation with infarction of skin, digits, and limbs is a characteristic feature of meningococcal sepsis. Children with meningococcal sepsis have higher than normal concentrations of plasminogen activator inhibitor 1 (PAI-1) in plasma. Combined with the widespread venous thrombosis, this finding suggests an impairment of fibrinolysis. A common functional insertion/deletion (4G/5G) polymorphism exists in the promoter region of the PAI-1 gene. We tested the hypothesis that children with the 4G/4G genotype produce higher concentrations of PAI-1, develop more severe coagulopathy, and are at greater risk of death during meningococcal sepsis. METHODS: The relation between meningococcal disease outcome, PAI-1 concentration, and PAI-1 genotype was investigated in 175 children with meningococcal disease (37 from Rotterdam, the Netherlands, and 138 from London, UK) and 226 controls (137 from Rotterdam, 89 from London). PAI-1 concentrations in plasma were measured by ELISA, and the 4G/5G PAI-1 polymorphism was detected by PCR and hybridisation. FINDINGS: Concentrations of PAI-1 on admission correlated with presentation (sepsis or meningitis) and outcome. The median PAI-1 concentration in children who died was substantially higher than that in survivors (2448 [IQR 1115-3191] vs 370 [146-914] ng/mL; p<0.0001). Patients with the 4G/4G genotype had significantly higher PAI-1 concentrations than those with the 4G/5G or 5G/5G genotype (1051 [550-2440] vs 436 [198-1225] ng/mL; p=0.03), and had an increased risk of death (relative risk 2.0 [1.0-3.8] for the two cohorts combined, and 4.8 [1.8-13] for the London cohort). INTERPRETATION: A genetic predisposition to produce high concentrations of PAI-1 is associated with poor outcome of meningococcal sepsis. This finding suggests that impaired fibrinolysis is an important factor in the pathophysiology of meningococcal sepsis.


Subject(s)
Disseminated Intravascular Coagulation/genetics , Meningococcal Infections/genetics , Plasminogen Activator Inhibitor 1/genetics , Adolescent , Case-Control Studies , Child , Child, Preschool , Cohort Studies , Disseminated Intravascular Coagulation/etiology , Disseminated Intravascular Coagulation/mortality , Enzyme-Linked Immunosorbent Assay , Female , Gene Deletion , Genotype , Humans , Infant , London/epidemiology , Male , Meningococcal Infections/complications , Meningococcal Infections/mortality , Netherlands/epidemiology , Plasminogen Activator Inhibitor 1/blood , Polymorphism, Genetic , Promoter Regions, Genetic , Risk Factors
8.
Lancet ; 353(9158): 1049-53, 1999 Mar 27.
Article in English | MEDLINE | ID: mdl-10199352

ABSTRACT

BACKGROUND: The reasons why meningococcal disease develops in only a small proportion of individuals carrying the causative bacteria are unknown. Differences in host responses to bacterial colonisation are thought to be involved, since people with deficiencies in the terminal components of the complement pathway, or of properdin, are susceptible to meningococcal disease. We postulate that genetic variants of mannose-binding lectin (MBL), a plasma opsonin that initiates another pathway of complement activation, might similarly cause susceptibility to meningococcal disease. METHODS: The frequency of variants of the MBL gene was ascertained in children with meningococcal disease and controls from two independent studies; one hospital-based (194 patients and 272 controls [patients with non-infectious disorders]), and one community-based (72 patients and 110 controls [healthy individuals]), by means of PCR and restriction-enzyme digestion, with confirmation by DNA sequencing. FINDINGS: The proportion of people homozygous for MBL-variant alleles was higher in patients with meningococcal disease than in controls in the hospital study (15 [7.7%] vs four [1.5%]; odds ratio 6.5 [95% CI 2.0-27.2]) and in the community study (six [8.3%] vs three [2.7%]; 4.5 [0.9-29.1]). The population attributable fraction of cases attributable to MBL variants (homozygous and heterozygous) was 32%. INTERPRETATION: The MBL pathway is a critical determinant of meningococcal-disease susceptibility, and genetic variants of MBL might account for a third of all disease cases.


Subject(s)
Carrier Proteins/genetics , Meningococcal Infections/genetics , Adolescent , Adult , Aged , Alleles , Base Sequence , Case-Control Studies , Child , Child, Preschool , Collectins , Female , Genetic Predisposition to Disease , Genetic Variation , Genotype , Humans , Infant , Lectins/genetics , Male , Middle Aged , Molecular Sequence Data , Polymerase Chain Reaction
9.
Diabetes ; 46(2): 287-91, 1997 Feb.
Article in English | MEDLINE | ID: mdl-9000706

ABSTRACT

Recent studies suggest that the gene encoding aldose reductase (ALR2), the enzyme that converts glucose to sorbitol, may confer susceptibility to microvascular disease. DNA from 275 British Caucasian patients with type I diabetes and 102 normal healthy control patients were typed for a (CA)n dinucleotide repeat polymorphic marker in the 5'-region of the ALR2 gene using polymorase chain reaction (PCR). A highly significant decrease in the frequency of the Z+2 allele was found in patients with nephropathy (nephropathy group) compared with those with no complications after a 20-year duration of diabetes (uncomplicated group) (12.7 vs. 38.2%, respectively, chi2 = 18.6, P < 0.00001); this was accompanied by an increase in the Z-2 allele in the nephropathy group (32.0 vs. 12.7% in the uncomplicated group). The nephropathy group also had a significant decrease in the Z/Z+2 genotype compared with the uncomplicated patients (10.7 vs. 44.7%, chi2 = 16.0, P < 0.0001) and an increased frequency of the Z/Z-2 genotype. There was no significant association with diabetic retinopathy. These results demonstrate that the ALR2 gene may play a role in susceptibility to diabetic nephropathy; individuals with the Z+2 allele are more than seven times less likely to develop diabetic renal disease than those without this marker. This marker may prove valuable in screening for patients with diabetic nephropathy at diagnosis of diabetes.


Subject(s)
Aldehyde Reductase/genetics , Diabetes Mellitus, Type 1/genetics , Diabetic Nephropathies/genetics , Diabetes Mellitus, Type 1/complications , Diabetic Retinopathy/genetics , Female , Gene Frequency , Genes , Humans , Male , Microsatellite Repeats , Polymorphism, Genetic
10.
J Diabetes Complications ; 11(1): 2-8, 1997.
Article in English | MEDLINE | ID: mdl-9025006

ABSTRACT

We have investigated the frequency of the angiotensin I-converting enzyme (ACE) insertion/ deletion (I/D) polymorphism in 249 patients with type I diabetes and 162 normal healthy controls. There was no significant difference in the frequency of ACE genotypes between those patients with diabetic nephropathy (n = 72) (nephropaths) compared to those with no proteinuria after 20 years duration of diabetes (n = 86) (normoalbuminurics). There was, however, a significant difference in the frequency of ACE genotypes between the short-duration and long-term normoalbuminuric group (chi = 11.5, p = 0.001). Analysis of the ACE genotypes with respect to age and duration of diabetes showed that homozygosity for the insertion (I/I) genotype was significantly decreased with longer duration of diabetes (r2 = 92.7%, p < 0.009). No association was found with age in the normal controls. In conclusion, these results suggest that the ACE locus may be associated with longevity and survival in patients with type I diabetes rather than diabetic nephropathy or microvascular disease per se.


Subject(s)
Diabetes Mellitus, Type 1/enzymology , Diabetes Mellitus, Type 1/genetics , Peptidyl-Dipeptidase A/genetics , Adolescent , Adult , Age Factors , Cohort Studies , Diabetes Mellitus, Type 1/complications , Diabetic Nephropathies/enzymology , Diabetic Nephropathies/genetics , Diabetic Neuropathies/enzymology , Diabetic Neuropathies/genetics , Diabetic Retinopathy/enzymology , Diabetic Retinopathy/genetics , Female , Gene Frequency , Genotype , Humans , Male , Middle Aged , Peptidyl-Dipeptidase A/classification , Proteinuria/enzymology , Proteinuria/genetics , Sex Characteristics , Time Factors
11.
J Diabetes Complications ; 10(2): 62-7, 1996.
Article in English | MEDLINE | ID: mdl-8777332

ABSTRACT

Aldose reductase (ALR2), the first enzyme of the polyol pathway, may plan an important role in the pathogenesis of diabetic microvascular complications. The gene coding for ALR2 has been localized to chromosome 7q35. Using an ALR2 probe in conjunction with the restriction endonuclease Bam-HI, we have investigated the ALR2 locus of 128 patients with type I diabetes. A significant decrease in the frequency of the 8.2 kilobase (kb) Bam-HI ALR2 genotype and 8.2 kb allele was found in patients with nephropathy (nephropaths) compared to those with retinopathy alone (retinopaths) (p < 0.05 and 0.25, respectively). We have previously shown that an RFLP of the T-cell antigen receptor constant beta-chain (TCRBC) locus, which is also localized to chromosome 7q35, is strongly associated with susceptibility to microvascular complications. The 128 patients were genotyped using the restriction endonuclease Bgl-II and a TCRBC probe. The 10/9.2-8.2 kb TCRBC-ALR2 genotype was significantly decreased in the nephropaths compared to the retinopaths (13.7% versus 43.6%, chi 2 = 10.1, p < 0.0025). The 10/9.2 and 9.2/9.2 kb TCRBC-ALR2 haplotypes were increased in the nephropaths compared to the retinopaths (32.5% versus 8.9% chi 2 = 10.9, p < 0.001). These results suggest that chromosome 7q35 harbors a gene(s) that is involved in the pathogenesis of microvascular complications. Interestingly, the gene coding for endothelial nitric oxide synthase has recently been localized to the same chromosomal region as ALR2.


Subject(s)
Aldehyde Reductase/genetics , Chromosomes, Human, Pair 7 , Diabetes Mellitus, Type 1/genetics , Diabetic Angiopathies/genetics , Receptors, Antigen, T-Cell, alpha-beta/genetics , Adolescent , Adult , Alleles , Child , Child, Preschool , Chromosome Mapping , DNA Primers , Diabetes Mellitus, Type 1/complications , Diabetic Nephropathies/genetics , Diabetic Retinopathy/genetics , Female , Gene Frequency , Genetic Predisposition to Disease , Genotype , Haplotypes , Humans , Infant , Male , Middle Aged
12.
Diabetologia ; 38(5): 623-8, 1995 May.
Article in English | MEDLINE | ID: mdl-7489848

ABSTRACT

The (MHC) class II association with insulin-dependent diabetes mellitus (IDDM) is well documented. However, it is likely that genes within the MHC class III and the class I region also play a role in determining susceptibility to IDDM. In this study we have used a novel molecular probe to investigate the class I P3A and P3B loci of 179 patients with IDDM and 142 normal control subjects. A highly significant increase in the frequency of the class I P3 4.0;1.5 kilobase (kb) and 4.0;1.8;1.5 kb genotypes was found in patients compared to the control subjects (chi 2 46.8, 6 df, p < 0.0001). The association with the P3B 1.5 kb allele was strongly associated with the age at onset of diabetes, being present in 96.2% of subjects who developed diabetes between the age of 10-20 years compared to 55.0 and 74.6% who developed diabetes before 10 years or after 20 years, respectively (chi 2 31.4, p < 0.0001). There was no evidence for linkage disequilibrium between the DQA1 and DQB1 loci and P3B suggesting that this is an independent association. In conclusion, these results suggest that genes in both the MHC class I and II regions confer susceptibility to IDDM and are related to the age at onset of the disease.


Subject(s)
Diabetes Mellitus, Type 1/genetics , Diabetes Mellitus, Type 1/immunology , Genes, MHC Class I , Histocompatibility Antigens Class I/genetics , Adolescent , Adult , Age of Onset , Cell Line , Centromere , Child , Chromosome Mapping , Chromosomes, Artificial, Yeast , DNA Probes , Disease Susceptibility/immunology , Gene Frequency , Genetic Predisposition to Disease , Genotype , HLA-A Antigens/genetics , HLA-B Antigens/genetics , Homozygote , Humans , Reference Values , Telomere
13.
Gastroenterology ; 106(5): 1321-5, 1994 May.
Article in English | MEDLINE | ID: mdl-7909781

ABSTRACT

BACKGROUND/AIMS: Susceptibility to autoimmune hepatitis is associated with HLA A1-B8-DR3 and DR4. T-Cell antigen receptors (TCR) are candidates for genetic susceptibility to autoimmune diseases because they recognize peptide antigens in the context of HLA molecules. The aim of this study was to investigate the possible role of TCR germline polymorphisms in susceptibility to autoimmune hepatitis. METHODS: TCR constant beta (C beta) region polymorphisms were investigated using restriction fragment length polymorphism analysis in 60 unrelated northern European White patients with autoimmune hepatitis and 190 racially and geographically matched healthy controls. RESULTS: A significant increase in the frequency of homozygous status for the 10-kilobase/Bgl II of the TCR C beta was found in the patients compared with controls (42% vs. 21%; corrected P value [Pc] < 0.0075; relative risk [RR] = 2.8). This difference was more pronounced in patients without HLA-DR3 and DR4 (50% vs. 14%; Pc < 0.015; RR = 6.1). Furthermore, heterozygosity for TCR C beta was significantly decreased in early-onset patients presenting with HLA-DR3 before 30 years of age (12% vs. 48%; Pc < 0.03; RR = 0.16). CONCLUSIONS: The present findings provide evidence that genetic susceptibility to AIH may be determined by both the TCR C beta genes and HLA genes and that the genotype of the TCR C beta may be one of the factors in influencing the age at onset of disease.


Subject(s)
Autoimmune Diseases/genetics , Genetic Predisposition to Disease , Hepatitis/genetics , Polymorphism, Genetic , Receptors, Antigen, T-Cell, alpha-beta/genetics , Adolescent , Adult , Age Factors , Aged , Aged, 80 and over , Autoimmune Diseases/immunology , Child , Child, Preschool , DNA/genetics , Female , Genotype , HLA-A1 Antigen/genetics , HLA-B8 Antigen/genetics , HLA-DR3 Antigen/genetics , HLA-DR4 Antigen/genetics , Hepatitis/immunology , Homozygote , Humans , Male , Middle Aged , Polymorphism, Restriction Fragment Length , Severity of Illness Index
14.
Immunology ; 79(3): 398-402, 1993 Jul.
Article in English | MEDLINE | ID: mdl-8406568

ABSTRACT

The human T-cell antigen receptor (TcR) V beta repertoire was investigated following in vivo reimmunization with tetanus toxoid (TT). Four healthy subjects were immunized subcutaneously with TT, and 24 samples of peripheral blood T cells were taken at intervals over several weeks and used to generate TcR-C beta chain-specific first-strand cDNA. A semi-quantitative assay utilizing the polymerase chain reaction (PCR) was used to measure the amount of 22 different TcR-V beta gene transcripts in the cDNA. A peak increase in the amount of V beta 2, 4, 6, 13.1 and 14 occurred 14 days post-immunization, with each V beta increased in at least two of the four subjects. No obvious changes in the other 17 V beta genes were found. A secondary antibody response to TT occurred in all subjects by day 14. These results show that it is now possible to characterize the in vivo kinetics of the human TcR repertoire following stimulation with a conventional antigen.


Subject(s)
Receptors, Antigen, T-Cell, alpha-beta/genetics , Tetanus Toxoid/immunology , Base Sequence , Humans , Immunoglobulin G/biosynthesis , Kinetics , Molecular Sequence Data , Polymerase Chain Reaction
15.
Clin Exp Immunol ; 92(2): 361-6, 1993 May.
Article in English | MEDLINE | ID: mdl-8387412

ABSTRACT

Mitogen stimulation of T cells in vitro has been employed in the analysis of the T cell antigen receptor (TCR) repertoire and as a method of generating T cell lines and clones. It has been suspected for some time that mitogen stimulation may bias the repertoire. We have addressed this problem employing a semi-quantitative technique utilizing the polymerase chain reaction (PCR) and flow cytometry. Using this PCR method and a panel of primers to 22 V beta subgroups, the V beta repertoire of both unstimulated and phytohaemagglutinin (PHA)-stimulated peripheral T cells from eight healthy individuals was investigated. The samples were also analysed by flow cytometry using anti-V beta 2, V beta 5 and V beta 8 MoAbs. A significant increase in the expression of V beta 6, V beta 7.2 and V beta 10.1 was found in all eight samples of PHA-stimulated T cells compared with unstimulated T cells using the PCR method. In contrast, no differences were found between unstimulated and PHA-stimulated T cells by flow cytometry. These results question the validity of using mitogen-stimulated T cells to investigate TCR gene usage.


Subject(s)
Gene Rearrangement, beta-Chain T-Cell Antigen Receptor , Lymphocyte Activation , Receptors, Antigen, T-Cell, alpha-beta/genetics , T-Lymphocytes/physiology , Base Sequence , CD3 Complex/analysis , Flow Cytometry , Humans , Mitogens/pharmacology , Molecular Sequence Data , Oligodeoxyribonucleotides/chemistry , Polymerase Chain Reaction
16.
Diabet Med ; 9(10): 929-33, 1992 Dec.
Article in English | MEDLINE | ID: mdl-1478038

ABSTRACT

Several groups have previously shown that the T-cell receptor (TCR) constant-beta (C beta) chain locus is associated with susceptibility to Type 1 diabetes, although other studies have failed to show this. We have extended these studies by investigating 125 individuals with Type 1 diabetes and failed to confirm the significantly increased frequency of the 10;9.2 kb TCR-C beta/Bgl-II genotype in our patient population. However, further analysis showed that the 10;9.2 kb TCR-C beta genotype was significantly increased in those patients with no microvascular complications after 20 years of diabetes compared to those patients with complications (proteinuria, overt neuropathy, and moderate or severe retinopathy) 69.2% vs 31.7%, respectively, p < 0.005 Pc = 0.025). Similar results were also found in a second group of 74 patients who were analysed in the same way. Hence, the failure of some investigators to confirm the association between TCR-C beta and Type I diabetes may be due to heterogeneity in the patient populations being studied.


Subject(s)
Diabetes Mellitus, Type 1/genetics , Diabetes Mellitus, Type 1/immunology , Polymorphism, Genetic , Receptors, Antigen, T-Cell, alpha-beta/genetics , Adolescent , Adult , Alleles , DNA Probes , Female , Genetic Predisposition to Disease , Genotype , Humans , Male
17.
J Gen Microbiol ; 137(8): 1963-70, 1991 Aug.
Article in English | MEDLINE | ID: mdl-1955874

ABSTRACT

Entertoxigenic Escherichia coli (ETEC) strains of nineteen serogroups which produced colonization factors (coli-surface-associated antigens CS5, CS6, CS7 and CS17, colonization factor antigen CFA/III and putative colonization factors PCFO159:H4, PCFO166 and PCFO9) were tested for hybridization with a DNA probe containing the cfaD sequence that regulates expression of CFA/I. Strong colony hybridization, similar to that with the CFA/I-positive control strain H10407, occurred with ETEC strains of serogroups O27, O159 and O169 which produced CS6 antigen, and with all the strains which produced PCFO166 fimbriae. Weak colony hybridization, compared to the control strain, was found with ETEC producing CS5 fimbriae with CS6 antigen, CFA/III fimbriae with CS6 antigen, CS7 fimbriae or PCFO159:H4 fimbriae. CS6-antigen-positive strains of serogroups O79, O89 and O148 and all the CS17-antigen-positive and PCFO9-fimbriae-positive strains were negative in colony hybridization tests with the cfaD probe. Plasmid DNA of nine ETEC strains and their colonization-factor-negative derivatives was tested for hybridization with the cfaD probe and with ST and LT oligonucleotide probes. The sequences that hybridized with the cfaD probe were on the plasmids which coded for enterotoxin production. Fifteen strains were transformed with NTP513, a recombinant plasmid which contains the CFA/I region 1 fimbrial subunit operon but lacks a functional cfaD sequence, in order to determine whether DNA in any of these strains could substitute for the cfaD sequence in the regulation of production of CFA/I fimbriae.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Antigens, Bacterial/genetics , Escherichia coli/genetics , Fimbriae Proteins , Gene Expression Regulation, Bacterial/physiology , Genes, Regulator/genetics , Agglutination Tests , Antigens, Bacterial/biosynthesis , Blotting, Western , DNA Probes/genetics , Electrophoresis, Polyacrylamide Gel , Enterotoxins/genetics , Enzyme-Linked Immunosorbent Assay , Escherichia coli/immunology , Escherichia coli/metabolism , Humans , Mannose/pharmacology , Nucleic Acid Hybridization , Operon/genetics , Plasmids/genetics , Transformation, Bacterial
18.
Epidemiol Infect ; 106(3): 477-84, 1991 Jun.
Article in English | MEDLINE | ID: mdl-1828771

ABSTRACT

Enterotoxigenic Escherichia coli (ETEC) from Burma, central Africa (Rwanda and Zaire) and Peru, were screened by enzyme-linked immunoassays for the colonization factor antigens (CFAs) and putative colonization factors (PCFs): CFA/I, CFA/II, which consists of three coli surface-associated (CS) antigens, CS1, CS2 and CS3, CFA/III, CFA/IV (CS4, CS5, CS6), CS7, PCFO9, PCFO159. H4, PCFO166, and CS17. The highest proportion of ETEC with identifiable colonization factors (71%) were found in the strains from Burma, which were mainly positive for CFA/I (38%), but strains producing CFA/II (4%), CFA/IV (11%), CS7 (10%), CS17 (4%), PCFO159, H4 (2%) and PCFO166 (2%) were also found. Sixty-nine percent of the ETEC from central Africa were positive for known colonization factors. While CFA/I positive strains were important (12%), a higher number of ETEC producing CFA/IV (33%) and CS17 (24%) were found. Fifty-two percent of the Peruvian strains produced identifiable colonization factors. The largest group of strains produced antigens of the CFA/IV complex (17%), while ETEC producing CFA/II (6%), CFA/III and CS6 (2%), CS7 (6%), PCFO9 (6%), PCFO166 (8%) and CS17 (7%) were also found. These surveys show that there is a considerable variation in the proportions and types of colonization factor found in different geographical areas. From 29 to 48% of the ETEC did not possess an identifiable colonization factor. These were particularly of the LT only producing type. These results have important implications for vaccine formulation.


Subject(s)
Antigens, Bacterial/analysis , Bacterial Proteins/analysis , Enterotoxins/biosynthesis , Escherichia coli/immunology , Fimbriae Proteins , Democratic Republic of the Congo , Diarrhea, Infantile/microbiology , Enzyme-Linked Immunosorbent Assay , Escherichia coli/classification , Escherichia coli/metabolism , Escherichia coli Infections/microbiology , Humans , Infant , Myanmar , Peru , Rwanda , Serotyping
19.
J Gen Microbiol ; 136(12): 2449-56, 1990 Dec.
Article in English | MEDLINE | ID: mdl-1981895

ABSTRACT

Escherichia coli strain 334 is a human enterotoxigenic strain of serotype O15:H11 which had previously been shown to produce 'attachment pili'. These fimbriae were compared with other colonization factors. From strain 334 a mannose-resistant haemagglutination positive colony 334A and a mannose-resistant haemagglutination negative variant 334C were isolated. By electron microscopy the fimbriae of strain 334A were shown to have a helical structure resembling coli-surface-associated antigen (CS5) fimbriae. An antiserum was raised to strain 334A and absorbed with a fimbriae-negative variant of that strain, 334C. By immuno-electron microscopy this antiserum was shown to coat fimbriae of strain 334A but not CS5 fimbriae produced by strain E17018A. Conversely, CS5 antiserum did not coat the fimbriae produced by strain 334A. No antigenic cross-reaction was detected between these intact fimbriae when anti-strain 334A serum and CS5 antiserum were used in immunodiffusion tests. By enzyme-linked immunosorbent assays (ELISAs) the fimbriae of strain 334A were shown to be antigenically unrelated to most other human ETEC adhesins, namely colonization factor antigens (CFA/I, CFA/III and CFA/IV), coli-surface-associated antigens (CS1, CS2, CS3, CS4, CS6 and CS17) and putative colonization factors (PCFO159:H4 and PCFO166). However, a heated suspension of strain 334A reacted weakly with CS5 antiserum in an ELISA. By SDS-PAGE the fimbriae of strain 334A were shown to consist of subunits of similar size to CS5 subunits, that is about 21.5 kDa. Western immunoblotting revealed that the subunits of 334A and CS5 fimbriae shared common epitopes.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Escherichia coli Infections/microbiology , Escherichia coli/physiology , Fimbriae, Bacterial/physiology , Bacterial Adhesion , Electrophoresis, Polyacrylamide Gel , Enzyme-Linked Immunosorbent Assay , Escherichia coli/analysis , Escherichia coli/pathogenicity , Humans , Immunodiffusion , Species Specificity
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