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1.
PLoS One ; 14(10): e0223131, 2019.
Article in English | MEDLINE | ID: mdl-31618274

ABSTRACT

Dual numbers allow for automatic, exact evaluation of the numerical derivative of high-dimensional functions at an arbitrary point with minimal coding effort. We use dual numbers to construct tangent linear and adjoint model code for a biogeochemical ocean model and apply it to a variational (4D-Var) data assimilation system when coupled to a realistic physical ocean circulation model with existing data assimilation capabilities. The resulting data assimilation system takes modestly longer to run than its hand-coded equivalent but is considerably easier to implement and updates automatically when modifications are made to the biogeochemical model, thus making its maintenance with code changes trivial.


Subject(s)
Data Aggregation , Linear Models , Nonlinear Dynamics , Computer Simulation , Environmental Monitoring/methods , Oceanography/methods , Oceans and Seas
2.
Science ; 365(6457): 1040-1044, 2019 09 06.
Article in English | MEDLINE | ID: mdl-31488692

ABSTRACT

From June to August 2018, the eruption of Kilauea volcano on the island of Hawai'i injected millions of cubic meters of molten lava into the nutrient-poor waters of the North Pacific Subtropical Gyre. The lava-impacted seawater was characterized by high concentrations of metals and nutrients that stimulated phytoplankton growth, resulting in an extensive plume of chlorophyll a that was detectable by satellite. Chemical and molecular evidence revealed that this biological response hinged on unexpectedly high concentrations of nitrate, despite the negligible quantities of nitrogen in basaltic lava. We hypothesize that the high nitrate was caused by buoyant plumes of nutrient-rich deep waters created by the substantial input of lava into the ocean. This large-scale ocean fertilization was therefore a unique perturbation event that revealed how marine ecosystems respond to exogenous inputs of nutrients.


Subject(s)
Phytoplankton/growth & development , Seawater/chemistry , Volcanic Eruptions , Chlorophyll A/analysis , Chlorophyll A/metabolism , Eutrophication , Hawaii , Metals/analysis , Nitrates/analysis , Nitrogen/analysis , Pacific Ocean , Phytoplankton/metabolism , Seawater/analysis
3.
Science ; 348(6237): 1261447, 2015 May 22.
Article in English | MEDLINE | ID: mdl-25999514

ABSTRACT

Agulhas rings provide the principal route for ocean waters to circulate from the Indo-Pacific to the Atlantic basin. Their influence on global ocean circulation is well known, but their role in plankton transport is largely unexplored. We show that, although the coarse taxonomic structure of plankton communities is continuous across the Agulhas choke point, South Atlantic plankton diversity is altered compared with Indian Ocean source populations. Modeling and in situ sampling of a young Agulhas ring indicate that strong vertical mixing drives complex nitrogen cycling, shaping community metabolism and biogeochemical signatures as the ring and associated plankton transit westward. The peculiar local environment inside Agulhas rings may provide a selective mechanism contributing to the limited dispersal of Indian Ocean plankton populations into the Atlantic.


Subject(s)
Plankton/physiology , Seawater , Atlantic Ocean , DNA, Ribosomal/genetics , Genetic Variation , Indian Ocean , Metagenomics , Nitrites/metabolism , Nitrogen/metabolism , Plankton/genetics , Plankton/metabolism , Selection, Genetic
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