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1.
Plant Direct ; 3(8): e00158, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31410390

ABSTRACT

Zea mays L. ssp. mays (maize) is an important crop plant as well as model system for genetics and plant biology. The ability to select among different virus-based platforms for transient gene silencing or protein expression experiments is expected to facilitate studies of gene function in maize and complement experiments with stable transgenes. Here, we describe the development of a sugarcane mosaic virus (SCMV) vector for the purpose of protein expression in maize. An infectious SCMV cDNA clone was constructed, and heterologous genetic elements were placed between the protein 1 (P1) and helper component-proteinase (HC-Pro) cistrons in the SCMV genome. Recombinant SCMV clones engineered to express green fluorescent protein (GFP), ß-glucuronidase (GUS), or bialaphos resistance (BAR) protein were introduced into sweet corn (Golden × Bantam) plants. Documentation of developmental time courses spanning maize growth from seedling to tasseling showed that the SCMV genome tolerates insertion of foreign sequences of at least 1,809 nucleotides at the P1/HC-Pro junction. Analysis of insert stability showed that the integrity of GFP and BAR coding sequences was maintained longer than that of the much larger GUS coding sequence. The SCMV isolate from which the expression vector is derived is able to infect several important maize inbred lines, suggesting that this SCMV vector has potential to be a valuable tool for gene functional analysis in a broad range of experimentally important maize genotypes.

2.
Mol Plant Pathol ; 19(3): 700-714, 2018 03.
Article in English | MEDLINE | ID: mdl-28378935

ABSTRACT

The plant membrane-localized NADPH oxidases, also known as respiratory burst oxidase homologues (RBOHs), play crucial roles in various cellular activities, including plant disease responses, and are a major source of reactive oxygen species (ROS). Sclerotinia sclerotiorum is a cosmopolitan fungal pathogen that causes Sclerotinia stem rot (SSR) in soybean. Via a key virulence factor, oxalic acid, it induces programmed cell death (PCD) in the host plant, a process that is reliant on ROS generation. In this study, using protein sequence similarity searches, we identified 17 soybean RBOHs (GmRBOHs) and studied their contribution to SSR disease development, drought tolerance and nodulation. We clustered the soybean RBOH genes into six groups of orthologues based on phylogenetic analysis with their Arabidopsis counterparts. Transcript analysis of all 17 GmRBOHs revealed that, of the six identified groups, group VI (GmRBOH-VI) was specifically and drastically induced following S. sclerotiorum challenge. Virus-induced gene silencing (VIGS) of GmRBOH-VI using Bean pod mottle virus (BPMV) resulted in enhanced resistance to S. sclerotiorum and markedly reduced ROS levels during disease development. Coincidently, GmRBOH-VI-silenced plants were also found to be drought tolerant, but showed a reduced capacity to form nodules. Our results indicate that the pathogenic development of S. sclerotiorum in soybean requires the active participation of specific host RBOHs, to induce ROS and cell death, thus leading to the establishment of disease.


Subject(s)
Ascomycota/pathogenicity , Glycine max/metabolism , Glycine max/microbiology , NADPH Oxidases/metabolism , Plant Proteins/metabolism , Droughts , NADPH Oxidases/genetics , Plant Proteins/genetics , Reactive Oxygen Species/metabolism
3.
BMC Genomics ; 17(1): 613, 2016 08 11.
Article in English | MEDLINE | ID: mdl-27515794

ABSTRACT

BACKGROUND: Bean common mosaic virus (BCMV) is widespread, with Phaseolus species as the primary host plants. Numerous BCMV strains have been identified on the basis of a panel of bean varieties that distinguish the pathogenicity types with respect to the viral strains. The molecular responses in Phaseolus to BCMV infection have not yet been well characterized. RESULTS: We report the transcriptional responses of a widely susceptible variety of common bean (Phaseolus vulgaris L., cultivar 'Stringless green refugee') to two BCMV strains, in a time-course experiment. We also report the genome sequence of a previously unreported BCMV strain. The interaction with the known strain NL1-Iowa causes moderate symptoms and large transcriptional responses, and the newly identified strain (Strain 2 or S2) causes severe symptoms and moderate transcriptional responses. The transcriptional profiles of host plants infected with the two isolates are distinct, and involve numerous differences in splice forms in particular genes, and pathway specific expression patterns. CONCLUSIONS: We identified differential host transcriptome response after infection of two different strains of Bean common mosaic virus (BCMV) in common bean (Phaseolus vulgaris L.). Virus infection initiated a suite of changes in gene expression level and patterns in the host plants. Pathways related to defense, gene regulation, metabolic processes, photosynthesis were specifically altered after virus infection. Results presented in this study can increase the understanding of host-pathogen interactions and provide resources for further investigations of the biological mechanisms in BCMV infection and defense.


Subject(s)
Gene Expression Regulation, Plant , Host-Pathogen Interactions , Phaseolus/genetics , Plant Diseases/genetics , Plant Proteins/genetics , Potyvirus/pathogenicity , Transcriptome , Gene Expression Profiling , Gene Ontology , Molecular Sequence Annotation , Phaseolus/immunology , Phaseolus/virology , Photosynthesis/genetics , Plant Diseases/immunology , Plant Diseases/virology , Plant Immunity/genetics , Plant Proteins/immunology , Potyvirus/genetics , Signal Transduction
4.
Plant Physiol ; 171(2): 760-72, 2016 06.
Article in English | MEDLINE | ID: mdl-27208311

ABSTRACT

Plant viruses have been widely used as vectors for foreign gene expression and virus-induced gene silencing (VIGS). A limited number of viruses have been developed into viral vectors for the purposes of gene expression or VIGS in monocotyledonous plants, and among these, the tripartite viruses Brome mosaic virus and Cucumber mosaic virus have been shown to induce VIGS in maize (Zea mays). We describe here a new DNA-based VIGS system derived from Foxtail mosaic virus (FoMV), a monopartite virus that is able to establish systemic infection and silencing of endogenous maize genes homologous to gene fragments inserted into the FoMV genome. To demonstrate VIGS applications of this FoMV vector system, four genes, phytoene desaturase (functions in carotenoid biosynthesis), lesion mimic22 (encodes a key enzyme of the porphyrin pathway), iojap (functions in plastid development), and brown midrib3 (caffeic acid O-methyltransferase), were silenced and characterized in the sweet corn line Golden × Bantam. Furthermore, we demonstrate that the FoMV infectious clone establishes systemic infection in maize inbred lines, sorghum (Sorghum bicolor), and green foxtail (Setaria viridis), indicating the potential wide applications of this viral vector system for functional genomics studies in maize and other monocots.


Subject(s)
Gene Silencing , Genetic Vectors/genetics , Potexvirus/genetics , Setaria Plant/genetics , Sorghum/genetics , Zea mays/genetics , Plant Leaves/genetics , Plant Leaves/virology , Plant Proteins/genetics , Potexvirus/physiology , Setaria Plant/virology , Sorghum/virology , Zea mays/virology
5.
Adv Virus Res ; 90: 355-90, 2014.
Article in English | MEDLINE | ID: mdl-25410106

ABSTRACT

Soybean, one of the world's most important sources of animal feed and vegetable oil, can be infected by numerous viruses. However, only a small number of the viruses that can potentially infect soybean are considered as major economic problems to soybean production. Therefore, we consider management options available to control diseases caused by eight viruses that cause, or have the potential to cause, significant economic loss to producers. We summarize management tactics in use and suggest direction for the future. Clearly, the most important tactic is disease resistance. Several resistance genes are available for three of the eight viruses discussed. Other options include use of virus-free seed and avoidance of alternative virus hosts when planting. Attempts at arthropod vector control have generally not provided consistent disease management. In the future, disease management will be considerably enhanced by knowledge of the interaction between soybean and viral proteins. Identification of genes required for soybean defense may represent key regulatory hubs that will enhance or broaden the spectrum of basal resistance to viruses. It may be possible to create new recessive or dominant negative alleles of host proteins that do not support viral functions but perform normal cellular function. The future approach to virus control based on gene editing or exploiting allelic diversity points to necessary research into soybean-virus interactions. This will help to generate the knowledge needed for rational design of durable resistance that will maximize global production.


Subject(s)
Glycine max/virology , Plant Diseases/prevention & control , Plant Diseases/virology , Agriculture/methods , Disease Resistance , Pest Control, Biological/methods , Plant Viruses/growth & development , Plants, Genetically Modified , Glycine max/immunology
6.
Mol Plant Microbe Interact ; 27(8): 824-34, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24762222

ABSTRACT

It has been well established that MPK6 is a positive regulator of defense responses in model plants such as Arabidopsis and tobacco. However, the functional importance of soybean MPK6 in disease resistance has not been investigated. Here, we showed that silencing of GmMPK6 in soybean using virus-induced gene silencing mediated by Bean pod mottle virus (BPMV) caused stunted growth and spontaneous cell death on the leaves, a typical phenotype of activated defense responses. Consistent with this phenotype, expression of pathogenesis-related (PR) genes and the conjugated form of salicylic acid were significantly increased in GmMPK6-silenced plants. As expected, GmMPK6-silenced plants were more resistant to downy mildew and Soybean mosaic virus compared with vector control plants, indicating a negative role of GmMPK6 in disease resistance. Interestingly, overexpression of GmMPK6, either transiently in Nicotiana benthamiana or stably in Arabidopsis, resulted in hypersensitive response (HR)-like cell death. The HR-like cell death was accompanied by increased PR gene expression, suggesting that GmMPK6, like its counterpart in other plant species, also plays a positive role in cell death induction and defense response. Using bimolecular fluorescence complementation analysis, we determined that GmMKK4 might function upstream of GmMPK6 and GmMKK4 could interact with GmMPK6 independent of its phosphorylation status. Taken together, our results indicate that GmMPK6 functions as both repressor and activator in defense responses of soybean.


Subject(s)
Disease Resistance , Gene Expression Regulation, Plant , Glycine max/enzymology , Plant Diseases/immunology , Plant Proteins/metabolism , Arabidopsis/enzymology , Arabidopsis/genetics , Arabidopsis/immunology , Arabidopsis/physiology , Cell Death , Gene Expression , Gene Silencing , Genes, Reporter , Mitogen-Activated Protein Kinase Kinases/genetics , Mitogen-Activated Protein Kinase Kinases/metabolism , Mitogen-Activated Protein Kinases/genetics , Mitogen-Activated Protein Kinases/metabolism , Peronospora/physiology , Phenotype , Plant Diseases/microbiology , Plant Leaves/enzymology , Plant Leaves/genetics , Plant Leaves/immunology , Plant Leaves/physiology , Plant Proteins/genetics , Plants, Genetically Modified , Potyvirus/physiology , Protein Interaction Mapping , Salicylic Acid/metabolism , Seedlings/enzymology , Seedlings/genetics , Seedlings/immunology , Seedlings/physiology , Glycine max/genetics , Glycine max/immunology , Glycine max/physiology , Nicotiana/enzymology , Nicotiana/genetics , Nicotiana/immunology , Nicotiana/physiology
7.
Plant Cell Environ ; 37(1): 213-34, 2014 Jan.
Article in English | MEDLINE | ID: mdl-23742135

ABSTRACT

In soybean [Glycine max (L.) Merr.], iron deficiency results in interveinal chlorosis and decreased photosynthetic capacity, leading to stunting and yield loss. In this study, gene expression analyses investigated the role of soybean replication protein A (RPA) subunits during iron stress. Nine RPA homologs were significantly differentially expressed in response to iron stress in the near isogenic lines (NILs) Clark (iron efficient) and Isoclark (iron inefficient). RPA homologs exhibited opposing expression patterns in the two NILs, with RPA expression significantly repressed during iron deficiency in Clark but induced in Isoclark. We used virus induced gene silencing (VIGS) to repress GmRPA3 expression in the iron inefficient line Isoclark and mirror expression in Clark. GmRPA3-silenced plants had improved IDC symptoms and chlorophyll content under iron deficient conditions and also displayed stunted growth regardless of iron availability. RNA-Seq comparing gene expression between GmRPA3-silenced and empty vector plants revealed massive transcriptional reprogramming with differential expression of genes associated with defense, immunity, aging, death, protein modification, protein synthesis, photosynthesis and iron uptake and transport genes. Our findings suggest the iron efficient genotype Clark is able to induce energy controlling pathways, possibly regulated by SnRK1/TOR, to promote nutrient recycling and stress responses in iron deficient conditions.


Subject(s)
Gene Expression Regulation, Plant , Genome, Plant/genetics , Glycine max/physiology , Iron Deficiencies , Replication Protein A/metabolism , Gene Expression Profiling , Gene Silencing , Models, Biological , Oligonucleotide Array Sequence Analysis , Phylogeny , Plant Proteins/metabolism , Protein Binding , Replication Protein A/genetics , Glycine max/genetics , Stress, Physiological , Symbiosis
8.
Methods Mol Biol ; 975: 149-56, 2013.
Article in English | MEDLINE | ID: mdl-23386301

ABSTRACT

Plant viral vectors are useful for transient gene expression as well as for downregulation of gene expression via virus-induced gene silencing (VIGS). When used in reverse genetics approaches, VIGS offers a convenient way of transforming genomic information into knowledge of gene function. Efforts to develop and improve plant viral vectors have expanded their applications and have led to substantial advances needed to facilitate gene function studies in major row crops. Here, we describe a DNA-based Bean pod mottle virus (BPMV) vector system for both gene expression and VIGS in soybean and common bean.


Subject(s)
Comovirus/genetics , Glycine max/genetics , Phaseolus/genetics , Biolistics , Gene Expression , Gene Knockdown Techniques/methods , Genes, Plant , Phaseolus/virology , Plant Leaves/genetics , Plant Leaves/virology , Plants, Genetically Modified , RNA Interference , Glycine max/virology
9.
Mol Plant Pathol ; 13(9): 1140-8, 2012 Dec.
Article in English | MEDLINE | ID: mdl-22738403

ABSTRACT

Virus-induced gene silencing (VIGS) is a powerful reverse genetics tool in plant science. In this study, we investigated the temporal and spatial silencing patterns achieved by Bean pod mottle virus (BPMV)-based VIGS in soybean using virus constructs targeting green fluorescence protein (GFP). Silencing GFP enabled an in-depth analysis of silencing in soybean tissues over time in a transgenic line constitutively expressing GFP. We discovered evidence for variable GFP silencing based on insert orientation and targeted region in the coding sequence. A 3' sequence in reverse orientation produced the strongest silencing phenotypes. Furthermore, we documented that BPMV VIGS can achieve widespread silencing in a broad range of tissues, including leaves, stems, flowers and roots. Near-complete silencing was attained in leaves and flowers. Although weaker than in shoots, the observed gene silencing in soybean roots will also allow reverse genetics studies in this tissue. When GFP fluorescence was assayed in cross-sections of stems and leaf petioles, near-complete and uniform silencing was observed in all cell types. Silencing was observed from as early as 2 weeks post-virus inoculation in leaves to 7 weeks post-virus inoculation in flowers, suggesting that this system can induce and maintain silencing for significant durations.


Subject(s)
Comovirus/physiology , Gene Silencing , Glycine max/genetics , Glycine max/virology , Flowers/metabolism , Flowers/virology , Green Fluorescent Proteins/metabolism , Plant Leaves/metabolism , Plant Leaves/virology , Time Factors , Transgenes/genetics
10.
Mol Plant Microbe Interact ; 25(10): 1307-13, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22712511

ABSTRACT

Soybean mosaic virus (SMV) is a major viral pathogen of soybean. Among the three SMV resistance genes, Rsv1 mediates extreme resistance (ER) against most SMV strains, including the ß-glucuronidase-tagged G2 isolate that was previously used in studies of Rsv1. Using virus-induced gene silencing (VIGS), we screened 82 VIGS constructs to identify genes that play a role in Rsv1-mediated ER to SMV infection. The target genes included putative Rsv1 candidate genes, soybean orthologs to known defense-signaling genes, and 62 WRKY transcription factors. We identified eight VIGS constructs that compromised Rsv1-mediated resistance when the target genes were silenced, including GmEDR1, GmEDS1, GmHSP90, GmJAR1, GmPAD4, and two WRKY transcription factors. Together, our results provide new insight into the soybean signaling network required for ER against SMV.


Subject(s)
Glycine max/immunology , Glycine max/metabolism , Plant Diseases/virology , Plant Proteins/genetics , Potyvirus/metabolism , Gene Expression Regulation, Plant/immunology , Gene Silencing , Plant Diseases/genetics , Plant Diseases/immunology , Plant Leaves/virology , Plant Proteins/immunology , Potyvirus/genetics , Signal Transduction , Glycine max/genetics
11.
PLoS One ; 6(11): e28342, 2011.
Article in English | MEDLINE | ID: mdl-22140577

ABSTRACT

BACKGROUND: Genetic resistance is the most effective and sustainable approach to the control of plant pathogens that are a major constraint to agriculture worldwide. In soybean, three dominant R genes, i.e., Rsv1, Rsv3 and Rsv4, have been identified and deployed against Soybean mosaic virus (SMV) with strain-specificities. Molecular identification of virulent determinants of SMV on these resistance genes will provide essential information for the proper utilization of these resistance genes to protect soybean against SMV, and advance knowledge of virus-host interactions in general. METHODOLOGY/PRINCIPAL FINDINGS: To study the gain and loss of SMV virulence on all the three resistance loci, SMV strains G7 and two G2 isolates L and LRB were used as parental viruses. SMV chimeras and mutants were created by partial genome swapping and point mutagenesis and then assessed for virulence on soybean cultivars PI96983 (Rsv1), L-29 (Rsv3), V94-5152 (Rsv4) and Williams 82 (rsv). It was found that P3 played an essential role in virulence determination on all three resistance loci and CI was required for virulence on Rsv1- and Rsv3-genotype soybeans. In addition, essential mutations in HC-Pro were also required for the gain of virulence on Rsv1-genotype soybean. To our best knowledge, this is the first report that CI and P3 are involved in virulence on Rsv1- and Rsv3-mediated resistance, respectively. CONCLUSIONS/SIGNIFICANCE: Multiple viral proteins, i.e., HC-Pro, P3 and CI, are involved in virulence on the three resistance loci and simultaneous mutations at essential positions of different viral proteins are required for an avirulent SMV strain to gain virulence on all three resistance loci. The likelihood of such mutations occurring naturally and concurrently on multiple viral proteins is low. Thus, incorporation of all three resistance genes in a soybean cultivar through gene pyramiding may provide durable resistance to SMV.


Subject(s)
Genes, Plant/genetics , Glycine max/genetics , Glycine max/virology , Mosaic Viruses/genetics , Mosaic Viruses/pathogenicity , Mutation/genetics , Viral Proteins/genetics , Amino Acid Sequence , Cysteine Endopeptidases/chemistry , Disease Resistance/genetics , Genetic Loci/genetics , Genotype , Molecular Sequence Data , Mosaic Viruses/isolation & purification , Plant Diseases/genetics , Plant Diseases/immunology , Plant Diseases/virology , Sequence Alignment , Viral Proteins/chemistry , Virulence/genetics
12.
Plant Physiol ; 157(3): 1363-78, 2011 Nov.
Article in English | MEDLINE | ID: mdl-21878550

ABSTRACT

Mitogen-activated protein kinase (MAPK) cascades play important roles in disease resistance in model plant species such as Arabidopsis (Arabidopsis thaliana) and tobacco (Nicotiana tabacum). However, the importance of MAPK signaling pathways in the disease resistance of crops is still largely uninvestigated. To better understand the role of MAPK signaling pathways in disease resistance in soybean (Glycine max), 13, nine, and 10 genes encoding distinct MAPKs, MAPKKs, and MAPKKKs, respectively, were silenced using virus-induced gene silencing mediated by Bean pod mottle virus. Among the plants silenced for various MAPKs, MAPKKs, and MAPKKKs, those in which GmMAPK4 homologs (GmMPK4s) were silenced displayed strong phenotypes including stunted stature and spontaneous cell death on the leaves and stems, the characteristic hallmarks of activated defense responses. Microarray analysis showed that genes involved in defense responses, such as those in salicylic acid (SA) signaling pathways, were significantly up-regulated in GmMPK4-silenced plants, whereas genes involved in growth and development, such as those in auxin signaling pathways and in cell cycle and proliferation, were significantly down-regulated. As expected, SA and hydrogen peroxide accumulation was significantly increased in GmMPK4-silenced plants. Accordingly, GmMPK4-silenced plants were more resistant to downy mildew and Soybean mosaic virus compared with vector control plants. Using bimolecular fluorescence complementation analysis and in vitro kinase assays, we determined that GmMKK1 and GmMKK2 might function upstream of GmMPK4. Taken together, our results indicate that GmMPK4s negatively regulate SA accumulation and defense response but positively regulate plant growth and development, and their functions are conserved across plant species.


Subject(s)
Arabidopsis Proteins/chemistry , Glycine max/growth & development , Glycine max/immunology , Mitogen-Activated Protein Kinases/chemistry , Plant Proteins/metabolism , Sequence Homology, Amino Acid , Cell Nucleus/enzymology , Disease Resistance/genetics , Down-Regulation/genetics , Gene Expression Profiling , Gene Expression Regulation, Plant , Gene Silencing , Hydrogen Peroxide/metabolism , Luminescent Measurements , Oligonucleotide Array Sequence Analysis , Peronospora/physiology , Phosphorylation , Plant Diseases/genetics , Plant Diseases/immunology , Plant Diseases/microbiology , Plant Diseases/virology , Plant Viruses/physiology , Protein Binding , Protein Transport , Salicylic Acid/metabolism , Glycine max/enzymology , Glycine max/genetics , Subcellular Fractions/enzymology , Up-Regulation/genetics
13.
Arch Virol ; 156(9): 1615-9, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21562882

ABSTRACT

Bean pod mottle virus (BPMV) RNAs are grouped into subgroups (sgI and sgII). A BPMV partial diploid reassortant (IA-Di1) from the perennial Desmodium illinoense contained both RNA1 subgroups and an RNA1 recombinant. The RNA2 of IA-Di1 was characteristic of sgII. Additionally, ten BPMV isolates from a soybean field adjacent to the locality of IA-Di1 shared >98.5% nucleotide identity with RNA1 sgII of IA-Di1. The data demonstrate the co-existence of two differing consensus BPMV RNA1 subgroups in adjacent habitats and illustrate variation in virus genetic structure that can occur in a contiguous plant community.


Subject(s)
Comovirus/isolation & purification , Fabaceae/virology , Plant Diseases/virology , Comovirus/classification , Comovirus/genetics , Genetic Variation , Molecular Sequence Data , Phylogeny , RNA, Viral/genetics
14.
Mol Plant Microbe Interact ; 24(2): 194-206, 2011 Feb.
Article in English | MEDLINE | ID: mdl-20977308

ABSTRACT

Asian soybean rust is an aggressive foliar disease caused by the obligate biotrophic fungus Phakopsora pachyrhizi. On susceptible plants, the pathogen penetrates and colonizes leaf tissue, resulting in the formation of necrotic lesions and the development of numerous uredinia. The soybean Rpp2 gene confers resistance to specific isolates of P. pachyrhizi. Rpp2-mediated resistance limits the growth of the pathogen and is characterized by the formation of reddish-brown lesions and few uredinia. Using virus-induced gene silencing, we screened 140 candidate genes to identify those that play a role in Rpp2 resistance toward P. pachyrhizi. Candidate genes included putative orthologs to known defense-signaling genes, transcription factors, and genes previously found to be upregulated during the Rpp2 resistance response. We identified 11 genes that compromised Rpp2-mediated resistance when silenced, including GmEDS1, GmNPR1, GmPAD4, GmPAL1, five predicted transcription factors, an O-methyl transferase, and a cytochrome P450 monooxygenase. Together, our results provide new insight into the signaling and biochemical pathways required for resistance against P. pachyrhizi.


Subject(s)
Basidiomycota/physiology , Fungal Proteins/metabolism , Glycine max/metabolism , Glycine max/microbiology , Plant Proteins/metabolism , Fungal Proteins/genetics , Gene Expression Profiling , Gene Expression Regulation, Plant/immunology , Gene Silencing , Plant Diseases/genetics , Plant Diseases/immunology , Plant Proteins/genetics , Glycine max/genetics
15.
Plant Physiol ; 153(1): 52-65, 2010 May.
Article in English | MEDLINE | ID: mdl-20200069

ABSTRACT

Plant viral vectors are valuable tools for heterologous gene expression, and because of virus-induced gene silencing (VIGS), they also have important applications as reverse genetics tools for gene function studies. Viral vectors are especially useful for plants such as soybean (Glycine max) that are recalcitrant to transformation. Previously, two generations of bean pod mottle virus (BPMV; genus Comovirus) vectors have been developed for overexpressing and silencing genes in soybean. However, the design of the previous vectors imposes constraints that limit their utility. For example, VIGS target sequences must be expressed as fusion proteins in the same reading frame as the viral polyprotein. This requirement limits the design of VIGS target sequences to open reading frames. Furthermore, expression of multiple genes or simultaneous silencing of one gene and expression of another was not possible. To overcome these and other issues, a new BPMV-based vector system was developed to facilitate a variety of applications for gene function studies in soybean as well as in common bean (Phaseolus vulgaris). These vectors are designed for simultaneous expression of multiple foreign genes, insertion of noncoding/antisense sequences, and simultaneous expression and silencing. The simultaneous expression of green fluorescent protein and silencing of phytoene desaturase shows that marker gene-assisted silencing is feasible. These results demonstrate the utility of this BPMV vector set for a wide range of applications in soybean and common bean, and they have implications for improvement of other plant virus-based vector systems.


Subject(s)
Comovirus/physiology , Gene Silencing , Gene Transfer Techniques , Genetic Vectors , Glycine max/virology , Phaseolus/virology , Amino Acid Sequence , Antisense Elements (Genetics) , Gene Expression , Molecular Sequence Data , Phaseolus/genetics , Phaseolus/metabolism , Phenotype , Plant Roots/metabolism , Plant Shoots/metabolism , Glycine max/genetics
16.
Virology ; 391(2): 240-8, 2009 Sep 01.
Article in English | MEDLINE | ID: mdl-19595406

ABSTRACT

Soybean mosaic virus (SMV; Potyvirus, Potyviridae) is one of the most widespread viruses of soybean globally. Three dominant resistance genes (Rsv1, Rsv3 and Rsv4) differentially confer resistance against SMV. Rsv1 confers extreme resistance and the resistance mechanism of Rsv4 is associated with late susceptibility. Here, we show that Rsv3 restricts the accumulation of SMV strain G7 to the inoculated leaves, whereas, SMV-N, an isolate of SMV strain G2, establishes systemic infection. This observation suggests that the resistance mechanism of Rsv3 differs phenotypically from those of Rsv1 and Rsv4. To identify virulence determinant(s) of SMV on an Rsv3-genotype soybean, chimeras were constructed by exchanging fragments between avirulent SMV-G7 and the virulent SMV-N. Analyses of the chimeras showed that both the N- and C-terminal regions of the cytoplasmic inclusion (CI) cistron are required for Rsv3-mediated resistance. Interestingly, the N-terminal region of CI is also involved in severe symptom induction in soybean.


Subject(s)
Genes , Glycine max/virology , Inclusion Bodies , Plant Diseases/virology , Potyvirus/pathogenicity , Viral Proteins , Virulence Factors , Genotype , Potyvirus/genetics , Recombination, Genetic
17.
Plant Physiol ; 150(1): 295-307, 2009 May.
Article in English | MEDLINE | ID: mdl-19251904

ABSTRACT

Asian soybean rust is a formidable threat to soybean (Glycine max) production in many areas of the world, including the United States. Only five sources of resistance have been identified (Resistance to Phakopsora pachyrhizi1 [Rpp1], Rpp2, Rpp3, Rpp4, and Rpp5). Rpp4 was previously identified in the resistant genotype PI459025B and mapped within 2 centimorgans of Satt288 on soybean chromosome 18 (linkage group G). Using simple sequence repeat markers, we developed a bacterial artificial chromosome contig for the Rpp4 locus in the susceptible cv Williams82 (Wm82). Sequencing within this region identified three Rpp4 candidate disease resistance genes (Rpp4C1-Rpp4C3 [Wm82]) with greatest similarity to the lettuce (Lactuca sativa) RGC2 family of coiled coil-nucleotide binding site-leucine rich repeat disease resistance genes. Constructs containing regions of the Wm82 Rpp4 candidate genes were used for virus-induced gene silencing experiments to silence resistance in PI459025B, confirming that orthologous genes confer resistance. Using primers developed from conserved sequences in the Wm82 Rpp4 candidate genes, we identified five Rpp4 candidate genes (Rpp4C1-Rpp4C5 [PI459025B]) from the resistant genotype. Additional markers developed from the Wm82 Rpp4 bacterial artificial chromosome contig further defined the region containing Rpp4 and eliminated Rpp4C1 (PI459025B) and Rpp4C3 (PI459025B) as candidate genes. Sequencing of reverse transcription-polymerase chain reaction products revealed that Rpp4C4 (PI459025B) was highly expressed in the resistant genotype, while expression of the other candidate genes was nearly undetectable. These data support Rpp4C4 (PI459025B) as the single candidate gene for Rpp4-mediated resistance to Asian soybean rust.


Subject(s)
Glycine max/genetics , Plant Diseases/genetics , Plant Proteins/genetics , Amino Acid Sequence , Chromosome Mapping , Chromosomes, Plant , Conserved Sequence , Gene Duplication , Genetic Markers , Genotype , Immunity, Innate/genetics , Plant Diseases/microbiology , Plant Proteins/chemistry , Plant Proteins/physiology , Recombination, Genetic , Sequence Analysis, Protein , Glycine max/microbiology
18.
Mol Plant Microbe Interact ; 22(2): 123-31, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19132865

ABSTRACT

Virus-induced gene silencing (VIGS) is increasingly being used as a reverse genetics tool to study functions of specific plant genes. It is especially useful for plants, such as soybean, that are recalcitrant to transformation. Previously, Bean pod mottle virus (BPMV) was shown to be an effective VIGS vector for soybean. However, the reported BPMV vector requires in vitro RNA transcription and inoculation, which is not reliable or amenable to high-throughput applications. To increase the efficiency of the BPMV vector for soybean functional genomics, a DNA-based version was developed. Reported here is the construction of a Cauliflower mosaic virus 35S promoter-driven BPMV vector that is efficient for the study of soybean gene function. The selection of a mild rather than a severe BPMV strain greatly reduced the symptom interference caused by virus infection. The DNA-based BPMV vector was used to silence soybean homologues of genes involved in plant defense, translation, and the cytoskeleton in shoots and in roots. VIGS of the Actin gene resulted in reduced numbers of Soybean mosaic virus infection foci. The results demonstrate the utility of this new vector as an efficient tool for a wide range of applications for soybean functional genomics.


Subject(s)
DNA, Viral/genetics , Gene Silencing , Genetic Engineering/methods , Genetic Vectors/genetics , Glycine max/genetics , Glycine max/virology , Cloning, Molecular , Gene Expression Regulation, Plant , Genes, Plant , Immunoblotting , Phenotype , Plant Roots/genetics , Plant Roots/virology , Plant Shoots/genetics , Plant Shoots/virology , Plant Viruses/pathogenicity , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA, Viral/genetics
19.
Virus Res ; 138(1-2): 50-6, 2008 Dec.
Article in English | MEDLINE | ID: mdl-18793685

ABSTRACT

A naturally occurring Rsv4 resistance-breaking isolate (L-RB) and a closely related non-resistance-breaking isolate (L) of Soybean mosaic virus (SMV) were identified in soybean fields in London, Ontario, Canada. The viral genomes of L and L-RB were completely sequenced. Each isolate has a 9585-nucleotide genome with a single open reading frame encoding a polyprotein of approximately 350 kDa. L-RB and L have a very high sequence similarity (99.6%) at both the nucleotide and amino acid levels. Phylogenetic analysis showed that the two isolates belong to the G2 pathotype. Pathogenicity predictions of all virus/soybean combinations, based on the phylogenetic profile, were confirmed by pathogenicity tests using L and L-RB isolates and soybeans carrying different resistance genes, with an exception that L-RB infected a soybean cultivar carrying Rsv4 resistance. The temporal and spatial proximity of L and L-RB and their high sequence similarity suggest L-RB was likely derived from the SMV-L quasispecies. Recombination analysis did not reveal the evidence of genetic recombination for the emergence of L-RB. Mutations introduced by virus-encoded RNA-dependent RNA polymerase during viral genome replication and selection pressure probably contributed to the occurrence of L-RB.


Subject(s)
Glycine max/virology , Immunity, Innate , Plant Diseases/virology , Plant Proteins/immunology , Potyvirus/genetics , Potyvirus/isolation & purification , Genome, Viral , Molecular Sequence Data , Phylogeny , Plant Diseases/genetics , Plant Diseases/immunology , Plant Proteins/genetics , Potyvirus/classification , Potyvirus/pathogenicity , Glycine max/genetics , Glycine max/immunology
20.
J Econ Entomol ; 101(4): 1211-27, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18767730

ABSTRACT

Cerotoma trifurcata Förster (Coleoptera: Chrysomelidae) and Bean pod mottle virus (Comoviridae) (BPMV) both can reduce yield and seed quality of soybean, Glycine max (L.) Merr. Field experiments were conducted to evaluate the effects of systemic, seed-applied, and foliar-applied insecticides for the management of this pest complex at three locations in central, northeastern, and northwestern Iowa during 2002-2004. Seed-applied insecticide was evaluated according to a currently recommended management program for Iowa (i.e., insecticide applications that target emerging overwintered beetles, F0, and the first seasonal generation, F1 ). The experimental treatments included seed-applied (thiamethoxam, 0.3-0.5 g [AI] kg(-1)] or clothianidin, 47.32 ml [AI] kg(-1)) and foliar-applied (A-cyhalothrin, 16.83-28.05 g [AI] ha(-1)) or esfenvalerate (43.74-54.69 g [AI] ha(-1)) insecticides. Applications of the foliar insecticides were timed to target F0, F1 or both F0 and F1 populations of C. trifurcata. Our results confirm that insecticides timed at F0 and F1 populations of C. trifurcata can reduce vector populations throughout the growing season, provide limited reduction in virus incidence, and improve both yield and seed coat color. Furthermore, seed-applied insecticides may be the more reliable option for an F0-targeted insecticide if used within this management strategy. An F0-targeted insecticide by itself only gave a yield improvement in one out of eight location-years. However, by adding an F1-targeted insecticide, there was a yield gain of 1.42-1.67 quintal ha(-1), based on contrast comparisons at three location-years.


Subject(s)
Coleoptera , Glycine max/parasitology , Insect Control/methods , Insecticides , Secoviridae/physiology , Animals , Coleoptera/virology , Insect Vectors , Plant Diseases/virology , Seeds , Glycine max/virology , Time Factors
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