Combined experimental studies and theoretical calculations to yield the complete molecular structure and vibrational spectra of (CH3)3GeH.

The molecular structure of trimethylgermane has been determined by gas electron diffraction experiments. Infrared spectra for the gaseous, liquid, and solid phases were also recorded. Parallel and perpendicular polarized Raman spectra for the liquid were measured to obtain depolarization values. The experimental studies were supported by a series of computational calculations using HF, B3LYP, and MP2 methods and a variety of basis sets. The force fields obtained from density functional theory using both B3LYP/6-31G* and B3LYP/6-311+G** were scaled with both Pulay's SQM methodology and Yoshida's WLS procedure to simulate the vibrational spectra and assist in the assignment of fundamental bands. The Raman intensities were obtained from polarizability derivatives. The vibrational spectra of trimethylgermane were completely assigned on the basis of the experimental data and the theoretical prediction of vibrational frequencies and intensities.

The strength of hydrogen bonding to metal-bound ligands can contribute to changes in the redox behaviour of metal centres.

A series of nine tripodal tetradentate ligands based on tris(pyridyl-2-methyl)amine TPA with hydrogen bond donors R in one, two and three of the pyridine 6-positions (R = NH2 amino, L(Am-1,2,3); NHCH2(t)Bu neopentylamino, L(Np-1,2,3); NHCO(t)Bu pivaloylamido, L(Piv-1,2,3)) and TPA are used to investigate the effect of different hydrogen bonding microenvironments on electrochemical properties of their LCuCl complexes. The hydrogen bond donors are rigidly preorganised and suitably oriented for intramolecular N-H...Cl-Cu hydrogen bonds. Cyclic voltammetry studies show that the reduction potential of the Cu(II)/Cu(I) couple as a function of the ligand follows the order TPA < L(Am-n) < or approximately L(Np-n) < L(Piv-n), and that the magnitude of the effect increases with the number of hydrogen bonding groups. These trends could be explained in terms of the steric and electronic effects exerted by these groups stabilising the Cu(I) oxidation state. In fact, the X-ray structure of the air-stable [(L(Piv-3))Cu(I)Cl] complex is reported and shows elongated Cu-N and Cu-Cl bonds, presumably due to the combination of steric and electron withdrawing effects exerted by the three pivaloylamido groups. We reasoned that the strength of hydrogen bonding in the Cu(I) and Cu(II) oxidation states could differ and therefore contribute also to the aforementioned redox changes; this hypothesis is tested using IR and NMR spectroscopy. IR studies of the [(L(Piv-1,2,3))Cu(I)Cl] and [(L(Piv-1,2,3))Cu(II)Cl]+ complexes in acetonitrile show that the intramolecular N-H...Cl-Cu hydrogen bonding weakens in the order L(Piv-1) > L(Piv-2) > L(Piv-3), and that it is stronger in the Cu(I) complexes. The 1H NMR spectra of the [(L(Piv1,2,3))Cu(I)Cl] complexes are in complete agreement with the IR data, and reveal that the stability of the Cu(I) complexes to oxidation in air increases in the order L(Piv-1) < L(Piv-2) << L(Piv-3). The hydrogen bonds in the Cu(I) complexes are stronger because of the higher electron density on the Cl ligand, when compared to the Cu(II) complexes. This is consistent with ab initio MP2 calculations performed on the complexes [(L(Piv-3))Cu(I)Cl] and [(L(Piv-3))Cu(II)Cl]+. Thus, the electron density of a metal-bound ligand acting as hydrogen bond acceptor is revealed as the major factor in determining the strength of the hydrogen bonds formed. From the IR data the energies of the N-H...Cl-Cu hydrogen bonds is estimated, as is the contribution of changes in hydrogen bond strength with the oxidation state of the copper centre and number of interactions to stabilising the Cu(I) state. Some of the implications of this result in dioxygen activation chemistry are discussed.

Molecular structures of the 1,6-disubstituted triptycenes Sb2(C6F4)3 and Bi2(C6F4)3 using gas-phase electron diffraction and ab initio and DFT calculations.

The structures of the D(3h)-symmetric molecules dodecafluoro-1,6-distibatriptycene and dodecafluoro-1,6-dibismatriptycene [Z2(C6F4)3 (Z = Sb, Bi)] have been determined in the gas phase by electron diffraction, using the SARACEN method, with restraints obtained from quantum chemical calculations. Several methods of ab initio and density functional theory geometry calculations have been performed and recommendations made as to their relative suitabilities for determining the structures of such species. Calculations using the MP2 method with a small-core pseudopotential (aug-cc-pVQZ-PP) on the Sb and Bi atoms and the 6-311G* basis set on the light atoms were found to give the closest correlation with the experimental results for both molecules. Differences in structure were found depending on whether a large-core or small-core pseudopotential was used on the heavy atoms.

An experimental and theoretical study of the molecular structure and vibrational spectra of iodotrimethylsilane (SiIMe3).

The gas-phase molecular structure of iodotrimethylsilane (ITMS) has been determined from electron diffraction data. Infrared and Raman spectra have been completely assigned. The experimental work is supported by ab initio HF and MP2 calculations for the gas-phase structure determination and DFT(B3LYP) calculations, combined with Pulay's SQM method, for the vibrational spectra data.

Molecular structures of Se(SCH3)2 and Te(SCH3)2 using gas-phase electron diffraction and ab initio and DFT geometry optimisations.

The molecular structures of Se(SCH(3))(2) and Te(SCH(3))(2) were investigated using gas-phase electron diffraction (GED) and ab initio and DFT geometry optimisations. While parameters involving H atoms were refined using flexible restraints according to the SARACEN method, parameters that depended only on heavy atoms could be refined without restraints. The GED-determined geometric parameters (r(h1)) are: rSe-S 219.1(1), rS-C 183.2(1), rC-H 109.6(4) pm; angleS-Se-S 102.9(3), angleSe-S-C 100.6(2), angleS-C-H (mean) 107.4(5), phiS-Se-S-C 87.9(20), phiSe-S-C-H 178.8(19) degrees for Se(SCH(3))(2), and rTe-S 238.1(2), rS-C 184.1(3), rC-H 110.0(6) pm; angleS-Te-S 98.9(6), angleTe-S-C 99.7(4), angleS-C-H (mean) 109.2(9), phiS-Te-S-C 73.0(48), phiTe-S-C-H 180.1(19) degrees for Te(SCH(3))(2). Ab initio and DFT calculations were performed at the HF, MP2 and B3LYP levels, employing either full-electron basis sets [3-21G(d) or 6-31G(d)] or an effective core potential with a valence basis set [LanL2DZ(d)]. The best fit to the GED structures was achieved at the MP2 level. Differences between GED and MP2 results for rS-C and angleS-Te-S were explained by the thermal population of excited vibrational states under the experimental conditions. All theoretical models agreed that each compound exists as two stable conformers, one in which the methyl groups are on the same side (g(+)g(-) conformer) and one in which they are on different sides (g(+)g(+) conformer) of the S-Y-S plane (Y = Se, Te). The conformational composition under the experimental conditions could not be resolved from the GED data. Despite GED R-factors and ab initio and DFT energies favouring the g(+)g(+) conformer, it is likely that both conformers are present, for Se(SCH(3))(2) as well as for Te(SCH(3))(2).

Gas-phase structures of aminodifluorophosphines determined using electron diffraction data and computational techniques.

The molecular structures of a family of eight aminodifluorophosphines, (PF2)NRR'(R, R' = H, CH3, SiH3, GeH3, PF2), have been redetermined using gas-phase electron diffraction data and high-level ab initio molecular-orbital calculations. The SARACEN method has allowed the application of flexible restraints, giving greater accuracy and precision of structure, while the SHRINK program has allowed curvilinear corrections for vibrational effects to be applied to intramolecular distances. The more accurate structures of these eight compounds show consistent patterns of effects attributable to the various substituents, while conformations are dominated by the requirement that adjacent phosphorus and nitrogen lone pairs of electrons should be orthogonal.

The molecular structure of [Sn(P2C2But2)] using gas-phase electron diffraction and DFT calculations.

The molecular structure of 2,4-di-tert-butyl-eta4-1,3-diphosphacyclobutadiene tin has been determined in the gas phase by electron diffraction using both the DYNAMITE and SARACEN methods. The suitability of many different theoretical methods for the calculation of structures of half-sandwich main-group metal complexes has been investigated, and, by comparison of the results with the experimental structures, suggestions have been made as to the most suitable methods for this class of compound.

Steric and electronic effects on the conformations of n-butane derivatives with trichlorosilyl, silyl and trichloromethyl groups.

The molecular structure and conformation of 1,1,1,4,4,4-hexachloro-1,4-disilabutane in the gas-phase have been determined by electron diffraction and computational methods. The lowest-energy conformation has the trichlorosilyl groups anti to one another. The gauche conformation also has a shallow potential minimum, but lies about 19 kJ mol-1 above the anti form. Calculations on related butane derivatives, in which terminal methyl groups have been replaced by CCl3, SiH3 and SiCl3 groups, reveal that the conformational preferences are primarily caused by steric interactions between the terminal groups, and that it is the presence of chlorine atoms that destabilises gauche conformations. The electronegativity of the chlorine atoms has only small effects, mainly limited to the SiCl bond lengths.

The structures of higher boron halides B8X12(X = F, Cl, Br and I) by gas-phase electron diffraction and ab initio calculations.

The structure of B8F12 has been shown by gas electron diffraction and computational methods (up to MP2/6-31+G*) to have the same highly asymmetric form observed in crystalline phases. The structure can be regarded as derived from a central B2 group, bridged by two BF2 groups to give a central B4 core that is folded, not planar, and with a very short bond [164.3 pm calculated, 164.2(19) pm experimental] along the fold line. There are also four terminal BF2 groups. One of the other four bonds in the core is consistently 20-30 pm longer than the others. This asymmetry has been attributed to many intra-molecular B...F interactions, particularly those between core boron atoms and fluorines of the terminal BF2 groups. Calculations for the chloro analogue lead to a structure similar to that for B8F12, but with the long core bond extended so that one of the bridging BCl2 groups may now be regarded as terminal. With bromine as the halogen the structure changes again, with one bromine atom taking up a bridging position. With iodine, this process continues further, and there are three bridging iodine atoms. However, in this case this is not the lowest energy structure, and instead a loosely associated dimer of B4I6 is preferred. In all these cases, and particularly with the heavier halogens, there are huge differences between the results obtained with different computational methods.

Determination of sugar structures in solution from residual dipolar coupling constants: methodology and application to methyl beta-D-xylopyranoside.

We have developed methodology for the determination of solution structures of small molecules from residual dipolar coupling constants measured in dilute liquid crystals. The power of the new technique is demonstrated by the determination of the structure of methyl beta-d-xylopyranoside (I) in solution. An oriented sample of I was prepared using a mixture of C(12)E(5) and hexanol in D(2)O. Thirty residual dipolar coupling constants, ranging from -6.44 to 4.99 Hz, were measured using intensity-based J-modulated NMR techniques. These include 15 D(HH), 4 (1)D(CH), and 11 (n)D(CH) coupling constants. The accuracy of the dipolar coupling constants is estimated to be < +/- 0.02 Hz. New constant-time HMBC NMR experiments were developed for the measurement of (n)D(CH) coupling constants, the use of which was crucial for the successful structure determination of I, as they allowed us to increase the number of fitted parameters. The structure of I was refined using a model in which the directly bonded interatom distances were fixed at their ab initio values, while 16 geometrical and 5 order parameters were optimized. These included 2 CCC and 6 CCH angles, and 2 CCCC and 6 CCCH dihedral angles. Vibrationally averaged dipolar coupling constants were used during the refinement. The refined solution structure of I is very similar to that obtained by ab initio calculations, with 11 bond and dihedral angles differing by 0.8 degrees or less and the remaining 5 parameters differing by up to 3.3 degrees . Comparison with the neutron diffraction structure showed larger differences attributable to crystal packing effects. Reducing the degree of order by using dilute liquid crystalline media in combination with precise measurement of small residual dipolar coupling constants, as shown here, is a way of overcoming the limitation of strongly orienting liquid crystals associated with the complexity of (1)H NMR spectra for molecules with more than 12 protons.

Dramatic structural effects of a single hydrogen atom in HNPBu t 3.

The molecular structure of tri-tert-butylphosphine imide has been re-determined using the recently developed DYNAMITE method, which allows all assumptions about local symmetry to be removed without increasing the number of refining structural parameters excessively. The imide hydrogen causes the NPBu(t)(3) group to deviate hugely from local C(3) symmetry, with N-P-C angles returned as 99.2(9), 110.9(7), and 111.5(11) degrees, while the C-P-C angles also deviate from symmetry, being 109.8(8), 110.5(9), and 113.9(9) degrees, so that the NPC(3) fragment is close to C(s) rather than C(3) symmetry. The application of the DYNAMITE method to HNPBu(t)(3) also allows the methyl groups to be asymmetric, which has been shown to be important by ab initio methods. The re-determination of this structure using these more sophisticated methods has also resulted in a much shorter P-N bond than was previously determined, and is consistent with the molecule being regarded as HN=PBu(t)(3), rather than HN(-)-P(+)Bu(t)(3).

The molecular structure of tetra-tert-butyldiphosphine: an extremely distorted, sterically crowded molecule.

The molecular structure of tetra-tert-butyldiphosphine has been determined in the gas phase by electron diffraction using the new DYNAMITE method and in the crystalline phase by X-ray diffraction. Ab initio methods were employed to gain a greater understanding of the structural preferences of this molecule in the gas phase, and to determine the intrinsic P-P bond energy, using recently described methods. Although the P-P bond is relatively long [GED 226.4(8) pm; X-ray 223.4(1) pm] and the dissociation energy is computed to be correspondingly small (150.6 kJ mol(-1)), the intrinsic energy of this bond (258.2 kJ mol(-1)) is normal for a diphosphine. The gaseous data were refined using the new Edinburgh structure refinement program ed@ed, which is described in detail. The molecular structure of gaseous P(2)Bu(t)(4) is compared to that of the isoelectronic 1,1,2,2-tetra-tert-butyldisilane. The molecules adopt a conformation with C(2) symmetry. The P-P-C angles returned from the gas electron diffraction refinement are 118.8(6) and 98.9(6) degrees, a difference of 20 degrees, whilst the C-P-C angle is 110.3(8) degrees. The corresponding parameters in the crystal are 120.9(1), 99.5(1) and 109.5(1) degrees. There are also large deformations within the tert-butyl groups, making the DYNAMITE analysis for this molecule extremely important.

Molecular structure of 1,1,2,2-tetra-tert-butyldisilane: unusual structural motifs in sterically crowded disilanes.

The molecular structure of 1,1,2,2-tetra-tert-butyldisilane has been determined by gas-phase electron diffraction supported by ab initio calculations, in the solution phase by Raman spectroscopy, and in the solid phase by Raman spectroscopy and X-ray crystallography. The gas-phase structure (C2 symmetry) was found to be almost anticlinal, a most unusual and unexpected result. In the favoured conformation, contact between tert-butyl groups at each end of the molecule is avoided by a large deviation of the angles around the silicon atoms from the parent tetrahedral angle of 109.5 degrees. In fact, the Si-Si-C angles returned from the gas electron diffraction refinement are 117.0(5) and 110.7(6) degrees, indicating the large degree of flexibility about the silicon centres. The ab initio methods and gas electron diffraction results indicate that there is only one conformer of But2HSiSiHBut2 in the gaseous mixture. Variable temperature Raman studies indicate the possibility of a further higher energy conformer existing in the liquid phase. However, this seems quite improbable from other observations made for the Raman spectra at all temperatures. The X-ray structure is close to that observed in the gas phase, with phiHSiSiH = 94.2(18) degrees. There is a large amount of disorder about one of the silicon postions and one of the tert-butyl groups within the crystal structure, which makes detailed direct comparison with the gaseous structure difficult.

Dynamic interaction of theory and experiment: total determination of the gas-phase molecular structure of tri-tert-butylphosphine oxide (OPBut3).

A new method to aid the determination of structures of sterically crowded molecules in the gas phase by dynamically linking the gas-phase electron diffraction (GED) refinement process with computational methods has been developed. The procedure involves refining the heavy-atom skeleton of the molecule using the GED data while continually updating the light-atom positions during the refinement using computational methods, in this case molecular mechanics. This removes errors associated with the assumption of local symmetry for the light-atom groups, which can affect the final values of the heavy-atom parameters. The refinement of the molecular structure of tri-tert-butyl phosphine oxide has been used to illustrate this new technique, which we call the DYNAMITE (DYNAMic Interaction of Theory and Experiment) method. Re-examination of the structure using this method has resulted in a shorter P-O distance than was found in a less sophisticated anaylsis, and is consistent with the molecule being regarded as O=PBut3, rather than O(-)-P+But3.

Molecular structure of tris(dipivaloylmethanato)lutetium(iii) studied by gas electron diffraction and ab initio and DFT calculations.

Combined gas electron diffraction/mass spectrometry (GED/MS) was used to determine the molecular structure of tris(dipivaloylmethanato)lutetium(III), Lu(dpm)(3)(dpm = 2,2,6,6-tetramethyl-heptane-3,5-dionato). Up to about 520-570 K the vapour consisted only of molecules Lu(dpm)(3). The experimental data recorded at 408(5) K indicate that the molecules have D(3) symmetry. The bond distances (r(h1)) in the chelate ring are Lu-O 2.197(6) Angstrom, C-O 1.270(4) Angstrom and C-C 1.390(6) Angstrom . Theoretical computations at the HF and DFT levels with basis sets up to 6-311G* afford structures similar to those found experimentally, with a distorted LuO(6) antiprism.

Strong intramolecular secondary si.N bonds in trifluorosilylhydrazines.

The simple silylhydrazines F(3)SiN(Me)NMe(2) (1), F(2)Si(N(Me)NMe(2))(2) (2), and F(3)SiN(SiMe(3))NMe(2) (3) have been prepared by reaction of SiF(4) with LiN(Me)NMe(2) and LiN(SiMe(3))NMe(2), while F(3)SiN(SnMe(3))NMe(2) (4) was prepared from SiF(4) and (Me(3)Sn)(2)NNMe(2) (5). The compounds were characterized by gas-phase IR and multinuclear NMR spectroscopy ((1)H, (13)C, (14/15)N, (19)F, (29)Si, (119)Sn), as well as by mass spectrometry. The crystal structures of compounds 1-5 were determined by X-ray crystallography. The structures of free molecules 1 and 3 were determined by gas-phase electron diffraction. The structures of 1, 2, and 4 were also determined by ab initio calculations at the MP2/6-311+G** level of theory. These structural studies constitute the first experimental proof for the presence of strong Si.N beta-donor-acceptor bonds between the SiF(3) and geminal NMe(2) groups in silylhydrazines. The strength of these non-classical Si.N interactions is strongly dependent on the nature of the substituent at the alpha-nitrogen atom of the SiNN unit, and has the order 3>4>1. The valence angles at these extremely deformed alpha-nitrogen atoms, and the Si.N distances are (crystal/gas): 1 104.2(1)/106.5(4) degrees, 2.438(1)/2.510(6) A; 3 83.6(1)/84.9(4) degrees, 2.102(1)/2.135(9) A; 4 89.6(1) degrees, 2.204(2) A.

Highly asymmetric coordination in alkenes: gas-phase structures of trans-1,2-dichloro-1,2-disilylethene and 1-bromo-1-silylethene.

The molecular structures of trans-1,2-dichloro-1,2-disilylethene and 1-bromo-1-silylethene have been determined by gas-phase electron diffraction (GED) and ab initio molecular orbital calculations (MP2/6-311G). Both compounds were found to have highly asymmetric coordination around the carbon atoms with [ab initio (r(e))/GED (r(a))] C=C-Cl [117.0/117.0(2) degrees] and C=C-Si [126.2/128.1(1) degrees] in the C(2)(h) structure of trans-1,2-dichloro-1,2-disilylethene and C=C-Br [119.2/120.7(4) degrees] and C=C-Si [125.0/125.0(4) degrees] in the C(s) structure of 1-bromo-1-silylethene. Other important structural parameters for trans-1,2-dichloro-1,2-disilylethene are C=C [135.2/134.5(3) pm], C-Si [189.4/187.9(2) pm], and C-Cl [175.1/174.9(1) pm], and C=C [134.2/133.4(2) pm], C-Si [187.8/187.2(3) pm], and C-Br [191.3/191.0(3) pm] for 1-bromo-1-silylethene. Further ab initio calculations were carried out on CH(2)CRX and trans-(CRX)(2) (R = SiH(3), CH(3), or H; X = H, F, Cl, or Br) to gauge the effects of electron-withdrawing and electron-donating groups on the structures. They reveal some even more distorted structures. The asymmetric appearance of these molecules can largely be accounted for by valence shell electron pair repulsion theory.