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1.
Aliment Pharmacol Ther ; 48(3): 322-332, 2018 08.
Article in English | MEDLINE | ID: mdl-29882252

ABSTRACT

BACKGROUND: Liver transplantation is the only life-extending intervention for primary sclerosing cholangitis (PSC). Given the co-existence with colitis, patients may also require colectomy; a factor potentially conferring improved post-transplant outcomes. AIM: To determine the impact of restorative surgery via ileal pouch-anal anastomosis (IPAA) vs retaining an end ileostomy on liver-related outcomes post-transplantation. METHODS: Graft survival was evaluated across a prospectively accrued transplant database, stratified according to colectomy status and type. RESULTS: Between 1990 and 2016, 240 individuals with PSC/colitis underwent transplantation (cumulative 1870 patient-years until first graft loss or last follow-up date), of whom 75 also required colectomy. A heightened incidence of graft loss was observed for the IPAA group vs those retaining an end ileostomy (2.8 vs 0.4 per 100 patient-years, log-rank P = 0.005), whereas rates between IPAA vs no colectomy groups were not significantly different (2.8 vs 1.7, P = 0.1). In addition, the ileostomy group experienced significantly lower graft loss rates vs. patients retaining an intact colon (P = 0.044). The risks conferred by IPAA persisted when taking into account timing of colectomy as related to liver transplantation via time-dependent Cox regression analysis. Hepatic artery thrombosis and biliary strictures were the principal aetiologies of graft loss overall. Incidence rates for both were not significantly different between IPAA and no colectomy groups (P = 0.092 and P = 0.358); however, end ileostomy appeared protective (P = 0.007 and 0.031, respectively). CONCLUSION: In PSC, liver transplantation, colectomy + IPAA is associated with similar incidence rates of hepatic artery thrombosis, recurrent biliary strictures and re-transplantation compared with no colectomy. Colectomy + end ileostomy confers more favourable graft outcomes.


Subject(s)
Cholangitis, Sclerosing/surgery , Graft Survival , Liver Transplantation , Proctocolectomy, Restorative , Adult , Budd-Chiari Syndrome/epidemiology , Budd-Chiari Syndrome/etiology , Cholangitis, Sclerosing/epidemiology , Cholangitis, Sclerosing/rehabilitation , Colectomy/adverse effects , Colectomy/methods , Colectomy/rehabilitation , Colectomy/statistics & numerical data , Colitis, Ulcerative/epidemiology , Colitis, Ulcerative/surgery , Constriction, Pathologic/epidemiology , Constriction, Pathologic/etiology , Female , Hepatic Artery/pathology , Humans , Ileostomy/adverse effects , Ileostomy/methods , Ileostomy/rehabilitation , Ileostomy/statistics & numerical data , Incidence , Liver Transplantation/rehabilitation , Male , Middle Aged , Postoperative Complications/epidemiology , Postoperative Complications/etiology , Proctocolectomy, Restorative/adverse effects , Proctocolectomy, Restorative/rehabilitation , Proctocolectomy, Restorative/statistics & numerical data , Reoperation/statistics & numerical data , Retrospective Studies , Thrombosis/epidemiology , Thrombosis/etiology , Treatment Outcome
2.
Aliment Pharmacol Ther ; 47(8): 1213-1219, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29468705

ABSTRACT

BACKGROUND: The use of rifampicin for cholestatic pruritus is accompanied by concerns over safety, but the availability of real-world prescribing data is relatively limited. AIM: We sought to describe the rate and characteristics of rifampicin-induced hepatitis in a mixed aetiology cohort of patients with established liver disease and cholestatic pruritus. METHODS: Retrospective review of records for out-patients commenced on rifampicin for pruritus 2012-2016 inclusive. Rifampicin-induced hepatitis was recorded where alanine aminotransferase activity (ALT) increased to both ≥5 × baseline and ≥5 × upper limit of normal (ULN), or to both ≥3 × baseline and ≥3 × ULN with concurrent elevation in serum bilirubin to ≥2 × baseline and ≥2 × ULN, in addition to a Roussel-Uclaf Causality Assessment Method score of "probable" or "highly probable" for rifampicin causality. RESULTS: After exclusions, we reviewed 105 patients who took rifampicin for a median of 131 days. Most had primary biliary cholangitis or primary sclerosing cholangitis; 40 (38.1%) were men and median age was 44 years (IQR: 32-57). 44 (41.9%) patients had baseline serum bilirubin ≥2 × ULN and 28 (26.7%) ALT ≥3 × ULN. 5 (4.8%) developed rifampicin-induced hepatitis at a median of 70(range 27-130) days after drug initiation. No individual or laboratory baseline characteristics were significantly associated with subsequent development of hepatitis. All cases of hepatitis recovered after drug cessation, although one patient was hospitalised and received corticosteroids. CONCLUSIONS: Given the efficacy of rifampicin for an important sub-group of those with cholestatic pruritus, adult patients, including those with jaundice, can be counselled that 95% of prescriptions are safe, and where hepatitis occurs, including at long latency, drug cessation appears effective.


Subject(s)
Cholestasis/drug therapy , Liver Diseases/etiology , Pruritus/drug therapy , Rifampin/adverse effects , Adult , Cholestasis/epidemiology , Cohort Studies , Female , Humans , Liver Diseases/epidemiology , Male , Middle Aged , Pruritus/epidemiology , Risk Factors
3.
Aliment Pharmacol Ther ; 47(5): 631-644, 2018 03.
Article in English | MEDLINE | ID: mdl-29271504

ABSTRACT

BACKGROUND: Validated diagnostic tools that are accurate, cost effective and acceptable to patients are required for disease stratification and monitoring in NAFLD. AIMS: To investigate the performance and cost of multiparametric MRI alongside existing biomarkers in the assessment of NAFLD. METHODS: Adult patients undergoing standard of care liver biopsy for NAFLD were prospectively recruited at two UK liver centres and underwent multiparametric MRI, blood sampling and transient elastography withing 2 weeks of liver biopsy. Non-invasive markers were compared to histology as the gold standard. RESULTS: Data were obtained in 50 patients and 6 healthy volunteers. Corrected T1 (cT1) correlated with NAFLD activity score (ρ = 0.514, P < .001). cT1, enhanced liver fibrosis (ELF) test and liver stiffness differentiated patients with simple steatosis and NASH with AUROC (95% CI) of 0.69 (0.50-0.88), 0.87 (0.77-0.79) and 0.82 (0.70-0.94) respectively and healthy volunteers from patients with AUROC (95% CI) of 0.93 (0.86-1.00), 0.81 (0.69-0.92) and 0.89 (0.77-1.00) respectively. For the risk stratification of NAFLD, multiparametric MRI could save £150,218 per 1000 patients compared to biopsy. Multiparametric MRI did not discriminate between individual histological fibrosis stages in this population (P = .068). CONCLUSIONS: Multiparametric MRI accurately identified patients with steatosis, stratifies those with NASH or simple steatosis and reliably excludes clinically significant liver disease with superior negative predictive value (83.3%) to liver stiffness (42.9%) and ELF (57.1%). For the risk stratification of NAFLD, multiparametric MRI was cost effective and, combined with transient elastography, had the lowest cost per correct diagnosis.


Subject(s)
Liver/diagnostic imaging , Magnetic Resonance Imaging , Non-alcoholic Fatty Liver Disease/diagnosis , Adolescent , Adult , Aged , Biopsy , Cost-Benefit Analysis , Elasticity Imaging Techniques/economics , Elasticity Imaging Techniques/methods , Female , Healthy Volunteers , Humans , Liver/pathology , Liver Cirrhosis/diagnosis , Liver Cirrhosis/economics , Magnetic Resonance Imaging/economics , Magnetic Resonance Imaging/methods , Male , Middle Aged , Non-alcoholic Fatty Liver Disease/economics , Non-alcoholic Fatty Liver Disease/pathology , Predictive Value of Tests , Young Adult
4.
Annu Rev Pathol ; 13: 247-292, 2018 01 24.
Article in English | MEDLINE | ID: mdl-29140756

ABSTRACT

Autoimmune hepatitis is an uncommon idiopathic syndrome of immune-mediated destruction of hepatocytes, typically associated with autoantibodies. The disease etiology is incompletely understood but includes a clear association with human leukocyte antigen (HLA) variants and other non-HLA gene variants, female sex, and the environment. Pathologically, there is a CD4+ T cell-rich lymphocytic inflammatory infiltrate with variable hepatocyte necrosis and subsequent hepatic fibrosis. Attempts to understand pathogenesis are informed by several monogenetic syndromes that may include autoimmune liver injury, by several drug and environmental agents that have been identified as triggers in a minority of cases, by human studies that point toward a central role for CD4+ effector and regulatory T cells, and by animal models of the disease. Nonspecific immunosuppression is the current standard therapy. Further understanding of the disease's cellular and molecular mechanisms may assist in the design of better-targeted therapies, aid the limitation of adverse effects from therapy, and inform individualized risk assessment and prognostication.


Subject(s)
Hepatitis, Autoimmune , Animals , Humans
5.
HLA ; 90(4): 228-233, 2017 10.
Article in English | MEDLINE | ID: mdl-28695657

ABSTRACT

Primary sclerosing cholangitis (PSC) is strongly associated with several human leukocyte antigen (HLA) haplotypes. Due to extensive linkage disequilibrium and multiple polymorphic candidate genes in the HLA complex, identifying the alleles responsible for these associations has proven difficult. We aimed to evaluate whether studying populations of admixed or non-European descent could help in defining the causative HLA alleles. When assessing haplotypes carrying HLA-DRB1*13:01 (hypothesized to specifically increase the susceptibility to chronic cholangitis), we observed that every haplotype in the Scandinavian PSC population carried HLA-DQB1*06:03. In contrast, only 65% of HLA-DRB1*13:01 haplotypes in an admixed/non-European PSC population carried this allele, suggesting that further assessments of the PSC-associated haplotype HLA-DRB1*13:01-DQA1*01:03-DQB1*06:03 in admixed or multi-ethnic populations could aid in identifying the causative allele.


Subject(s)
Cholangitis, Sclerosing/genetics , Genetic Predisposition to Disease , HLA-DQ beta-Chains/genetics , HLA-DRB1 Chains/genetics , Haplotypes , Alleles , Cholangitis, Sclerosing/ethnology , Cholangitis, Sclerosing/immunology , Ethnicity , Gene Expression , Gene Frequency , HLA-DQ beta-Chains/classification , HLA-DQ beta-Chains/immunology , HLA-DRB1 Chains/classification , HLA-DRB1 Chains/immunology , Humans , Linkage Disequilibrium , Scandinavian and Nordic Countries , White People
6.
Clin Exp Immunol ; 188(3): 394-411, 2017 06.
Article in English | MEDLINE | ID: mdl-28176332

ABSTRACT

CD4+ CD25high CD127low forkhead box protein 3 (FoxP3+ ) regulatory T cells (Treg ) are essential for the maintenance of peripheral tolerance. Impaired Treg function and an imbalance between effector and Tregs contribute to the pathogenesis of autoimmune diseases. We reported recently that the hepatic microenvironment is deficient in interleukin (IL)-2, a cytokine essential for Treg survival and function. Consequently, few liver-infiltrating Treg demonstrate signal transducer and activator of transcription-5 (STAT-5) phosphorylation. To establish the potential of IL-2 to enhance Treg therapy, we investigated the effects of very low dose Proleukin (VLDP) on the phosphorylation of STAT-5 and the subsequent survival and function of Treg and T effector cells from the blood and livers of patients with autoimmune liver diseases. VLDP, at less than 5 IU/ml, resulted in selective phosphorylation of STAT-5 in Treg but not effector T cells or natural killer cells and associated with increased expression of cytotoxic T lymphocyte antigen-4 (CTLA-4), FoxP3 and CD25 and the anti-apoptotic protein Bcl-2 in Treg with the greatest enhancement of regulatory phenotype in the effector memory Treg population. VLDP also maintained expression of the liver-homing chemokine receptor CXCR3. VLDP enhanced Treg function in a CTLA-4-dependent manner. These findings open new avenues for future VLDP cytokine therapy alone or in combination with clinical grade Treg in autoimmune liver diseases, as VLDP could not only enhance regulatory phenotype and functional property but also the survival of intrahepatic Treg .


Subject(s)
Autoimmune Diseases/immunology , CTLA-4 Antigen/metabolism , Interleukin-2/analogs & derivatives , Liver Diseases/immunology , STAT5 Transcription Factor/metabolism , T-Lymphocytes, Regulatory/immunology , Adult , Aged , Biomarkers/metabolism , Case-Control Studies , Cells, Cultured , Female , Flow Cytometry , Humans , Interleukin-2/administration & dosage , Male , Middle Aged , Phosphorylation , Recombinant Proteins/administration & dosage , T-Lymphocytes, Regulatory/drug effects , Young Adult
7.
Aliment Pharmacol Ther ; 45(5): 723-732, 2017 03.
Article in English | MEDLINE | ID: mdl-28004405

ABSTRACT

BACKGROUND: High-quality data on the management of autoimmune hepatitis (AIH) are scarce. Despite published guidelines, management of AIH is still expert based rather than evidence based. AIM: To survey expert hepatologists, asking each to describe their practices in the management of patients with AIH. METHODS: A survey questionnaire was distributed to members of the International AIH Group. The questionnaire consisted of four clinical scenarios on different presentations of AIH. RESULTS: Sixty surveys were sent, out of which 37 were returned. None reported budesonide as a first line induction agent for the acute presentation of AIH. Five (14%) participants reported using thiopurine S-methyltransferase measurements before commencement of thiopurine maintenance therapy. Thirteen (35%) routinely perform liver biopsy at 2 years of biochemical remission. If histological inflammatory activity is absent, four (11%) participants reduced azathioprine, whereas 10 (27%) attempted withdrawal altogether. Regarding the management of difficult-to-treat patients, mycophenolate mofetil is the most widely used second-line agent (n = ~450 in 28 centres), whereas tacrolimus (n = ~115 in 21 centres) and ciclosporin (n = ~112 in 18 centres) are less often reported. One centre reported considerable experience with infliximab, while rescue therapy with rituximab has been tried in seven centres. CONCLUSIONS: There is a wide variation in the management of patients with autoimmune hepatitis even among the most expert in the field. Although good quality evidence is lacking, there is considerable experience with second-line therapies. Future prospective studies should address these issues, so that we move from an expert- to an evidence- and personalised-based care in autoimmune hepatitis.


Subject(s)
Hepatitis, Autoimmune/drug therapy , Immunosuppressive Agents/therapeutic use , Azathioprine/therapeutic use , Biopsy , Budesonide/therapeutic use , Cyclosporine/therapeutic use , Health Care Surveys , Humans , Methyltransferases/metabolism , Mycophenolic Acid/therapeutic use , Rituximab/therapeutic use , Tacrolimus/therapeutic use
8.
Aliment Pharmacol Ther ; 44(10): 1039-1050, 2016 11.
Article in English | MEDLINE | ID: mdl-27640331

ABSTRACT

BACKGROUND: Age at presentation with primary biliary cholangitis (PBC) is associated with differential response to ursodeoxycholic acid (UDCA) therapy. Younger-presenting patients are less likely to respond to treatment and more likely to need transplant or die from the disease. PBC has a complex impact on quality of life (QoL), with systemic symptoms often having significant impact. AIM: To explain the impact of age at presentation on perceived QoL and the inter-related symptoms which impact upon it. METHODS: Using the UK-PBC cohort, symptoms were assessed using the PBC-40 and other validated tools. Data were available on 2055 patients. RESULTS: Of the 1990 patients reporting a global PBC-QoL score, 66% reported good/neutral scores and 34% reported poor scores. Each 10-year increase in age at presentation was associated with a 14% decrease in risk of poor perceived QoL (OR = 0.86, 95% CI: 0.75-0.98, P < 0.05). All symptom domains were similarly age-associated (P < 0.01). Social dysfunction was the symptom factor with the greatest impact on QoL. Median (interquartile range) PBC-40 social scores for patients with good perceived QoL were 18 (14-23) compared with 34 (29-39) for those with poor QoL. CONCLUSION: The majority of patients with primary biliary cholangitis do not feel their QoL is impaired, although impairment is reported by a sizeable minority. Age at presentation is associated with impact on perceived QoL and the symptoms impairing it, with younger patients being more affected. Social dysfunction makes the greatest contribution to QoL impairment, and it should be targeted in trials aimed at improving life quality.


Subject(s)
Liver Cirrhosis, Biliary , Quality of Life , Adolescent , Adult , Aged , Aged, 80 and over , Cholagogues and Choleretics/therapeutic use , Female , Humans , Liver Cirrhosis, Biliary/drug therapy , Male , Middle Aged , Severity of Illness Index , Ursodeoxycholic Acid/therapeutic use , Young Adult
9.
Transpl Infect Dis ; 18(5): 805-808, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27500398

ABSTRACT

Toxoplasmosis may be transferred by organ transplantation. The most common clinical presentation is with multisystem disease, although isolated ocular toxoplasmosis has been described. Many centers have suggested that universal use of co-trimoxazole prophylaxis obviates the need for specific Toxoplasma testing. We report a case of donor-acquired ocular toxoplasmosis after liver transplantation despite co-trimoxazole prophylaxis. The diagnosis was confirmed by Toxoplasma polymerase chain reaction assay in conjunction with seroconversion. The fact that the infection was donor acquired was confirmed by serological mismatch and the absence of sporozoite-specific antigen antibody in the recipient.


Subject(s)
Allografts/parasitology , Antibiotic Prophylaxis/adverse effects , Antibiotic Prophylaxis/methods , Antiprotozoal Agents/therapeutic use , Chorioretinitis/diagnosis , Liver Failure, Acute/surgery , Liver Transplantation/adverse effects , Toxoplasma/isolation & purification , Toxoplasmosis, Ocular/diagnosis , Trimethoprim, Sulfamethoxazole Drug Combination/therapeutic use , Adult , Antigens, Protozoan/immunology , Antiprotozoal Agents/administration & dosage , Chorioretinitis/blood , Chorioretinitis/drug therapy , Chorioretinitis/parasitology , Diagnosis, Differential , Female , Humans , Immunosuppression Therapy/methods , Polymerase Chain Reaction , Seroconversion , Serologic Tests , Toxoplasma/immunology , Toxoplasmosis, Ocular/blood , Toxoplasmosis, Ocular/drug therapy , Toxoplasmosis, Ocular/parasitology , Transplantation, Homologous/adverse effects , Trimethoprim, Sulfamethoxazole Drug Combination/administration & dosage
11.
Aliment Pharmacol Ther ; 43(2): 283-93, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26559762

ABSTRACT

BACKGROUND: Fibrates appear to improve biochemistry in patients with primary biliary cholangitis (PBC), but it is unclear which factors predict response and whether treatment improves transplant-free survival. AIM: To evaluate biochemical profiles, liver-related outcomes and adverse events following fenofibrate therapy in PBC patients with incomplete response to ursodeoxycholic acid (UDCA). METHODS: A retrospective cohort study was performed at a tertiary centre. Cox regression was used to compare outcomes between patients treated with fibrates and UDCA (FF) or UDCA alone, adjusted for a propensity score to account for treatment selection bias. RESULTS: A total of 120 patients were included (FF group n = 46, UDCA group n = 74, median fenofibrate treatment 11 months); 41% vs. 7% met the Toronto criteria for biochemical response [alkaline phosphatase ≤1.67 times the upper limit of normal] in the FF and UDCA groups, respectively (P = 0.0001). Fenofibrate was also associated with improved decompensation-free and transplant-free survival [hazard ratio (HR) 0.09, 95% CI 0.03-0.32, P = 0.0002]. However, only fenofibrate use, not biochemical response, was independently associated with improved outcomes on multivariable analysis (HR 0.40, 95% CI 0.17-0.93, P = 0.03). Twenty-two percent discontinued fenofibrate due to adverse events (most common: abdominal pain and myalgias). In cirrhotic patients, bilirubin increased more rapidly in the FF group (P = 0.005). CONCLUSIONS: Fenofibrate therapy is associated with significant improvement in alkaline phosphatase, decompensation-free and transplant-free survival in PBC patients with incomplete UDCA response. However, fenofibrate should be used cautiously in cirrhosis, with close monitoring for clinical/biochemical decompensation. Additional studies are required to assess the validity of alkaline phosphatase as an appropriate response criteria for fibrate therapy.


Subject(s)
Fenofibrate/administration & dosage , Liver Cirrhosis, Biliary/drug therapy , Ursodeoxycholic Acid/administration & dosage , Adult , Aged , Alkaline Phosphatase/metabolism , Bilirubin/metabolism , Cholagogues and Choleretics/administration & dosage , Cholagogues and Choleretics/therapeutic use , Cohort Studies , Female , Humans , Male , Middle Aged , Proportional Hazards Models , Retrospective Studies , Ursodeoxycholic Acid/therapeutic use
12.
J Autoimmun ; 66: 25-39, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26347073

ABSTRACT

Primary biliary cirrhosis (PBC), primary sclerosing cholangitis (PSC) and autoimmune hepatitis (AIH) represent the three major hepatic autoimmune conditions. Patient morbidity and mortality remain high across these three diseases, and an unmet need for rational therapy exists. Disease understanding has focused on combining clinical and laboratory based science to provide better insights into the joint host and environmental factors necessary for the initiation, and perpetuation, of hepato-biliary inflammation. Twin studies, family studies, population studies and an inter-relationship with other autoimmune phenomena suggest a genetic component to risk for each disease. Until recently, understanding of this genetic risk has been limited to HLA haplotypes. Associations with risk-conferring and protective HLA haplotypes are present in all three diseases. Over the last few years, genome-wide association studies (GWAS), and related genetic association studies, have greatly increased understanding of the genetic risk signature of these three diseases and autoimmunity in general. Here we consider the rationale for GWAS in general and with specific reference to hepatic autoimmunity. We consider the process of GWAS, and highlight major findings to date. Potential functional implications of key findings are discussed including the IL-12/STAT4 pathway in PBC and the CD28/IL-2 pathway in PSC. We describe the marked pleiotropy demonstrated by PBC and PSC, which is consistent with other autoimmune diseases. Further, we focus on specific gene associations including SH2B3, which is common to all three diseases, and FUT2 in PSC, which represents a link between environment and genetics. We review attempts to translate GWAS findings into basic laboratory models including in vivo systems and highlight where clinical observations relate to genetics. Finally we describe deficiencies in GWAS to date and consider future study of genetics in hepatic autoimmunity.


Subject(s)
Autoimmunity/genetics , Cholangitis, Sclerosing/genetics , Genetic Predisposition to Disease , Genome-Wide Association Study , Hepatitis, Autoimmune/genetics , Liver Cirrhosis, Biliary/genetics , Adaptor Proteins, Signal Transducing , CD28 Antigens/genetics , CD28 Antigens/metabolism , Cholangitis, Sclerosing/immunology , Epistasis, Genetic , Fucosyltransferases/genetics , Fucosyltransferases/immunology , HLA Antigens/genetics , Haplotypes , Hepatitis, Autoimmune/immunology , Humans , Interleukin-12/genetics , Interleukin-12/metabolism , Interleukin-2/genetics , Interleukin-2/metabolism , Intracellular Signaling Peptides and Proteins , Liver/immunology , Liver Cirrhosis, Biliary/immunology , Polymorphism, Single Nucleotide , Proteins/genetics , Proteins/immunology , Risk Factors , STAT4 Transcription Factor/genetics , STAT4 Transcription Factor/metabolism , Signal Transduction/immunology , Galactoside 2-alpha-L-fucosyltransferase
13.
J Autoimmun ; 64: 42-52, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26250073

ABSTRACT

Primary biliary cirrhosis (PBC), a classic autoimmune liver disease, is characterised by a progressive T cell predominant lymphocytic cholangitis, and a serologic pattern of reactivity in the form of specific anti-mitochondrial antibodies (AMA). CD4+ T cells are particularly implicated by PBC's cytokine signature, the presence of CD4+ T cells specific to mitochondrial auto-antigens, the expression of MHC II on injured biliary epithelial cells, and PBC's coincidence with other similar T cell mediated autoimmune conditions. CD4+ T cells are also central to current animal models of PBC, and their transfer typically also transfers disease. The importance of genetic risk to developing PBC is evidenced by a much higher concordance rate in monozygotic than dizygotic twins, increased AMA rates in asymptomatic relatives, and disproportionate rates of disease in siblings of PBC patients, PBC family members and certain genetically defined populations. Recently, high-throughput genetic studies have greatly expanded our understanding of the gene variants underpinning risk for PBC development, so linking genetics and immunology. Here we summarize genetic association data that has emerged from large scale genome-wide association studies and discuss the evidence for the potential functional significance of the individual genes and pathways identified; we particularly highlight associations in the IL-12-STAT4-Th1 pathway. HLA associations and epigenetic effects are specifically considered and individual variants are linked to clinical phenotypes where data exist. We also consider why there is a gap between calculated genetic risk and clinical data: so-called missing heritability, and how immunogenetic observations are being translated to novel therapies. Ultimately whilst genetic risk factors will only account for a proportion of disease risk, ongoing efforts to refine associations and understand biologic links to disease pathways are hoped to drive more rational therapy for patients.


Subject(s)
Immunogenetics , Liver Cirrhosis, Biliary/genetics , Liver Cirrhosis, Biliary/immunology , Animals , B-Lymphocyte Subsets/immunology , B-Lymphocyte Subsets/metabolism , Epigenesis, Genetic , Epistasis, Genetic , Gene Expression Regulation , Genetic Loci , Genetic Predisposition to Disease , Genetic Variation , Genome-Wide Association Study , HLA Antigens/genetics , HLA Antigens/immunology , Humans , Liver Cirrhosis, Biliary/diagnosis , Liver Cirrhosis, Biliary/metabolism , Liver Cirrhosis, Biliary/therapy , Phenotype , Selection, Genetic , Signal Transduction , T-Lymphocyte Subsets/immunology , T-Lymphocyte Subsets/metabolism
15.
Aliment Pharmacol Ther ; 41(10): 980-90, 2015 May.
Article in English | MEDLINE | ID: mdl-25783671

ABSTRACT

BACKGROUND: The relationships between primary sclerosing cholangitis (PSC) and the environment are largely unknown. AIM: To validate associations reported in previous studies and to identify novel environmental exposures among PSC patients. METHODS: We performed a multicenter, case-control analysis utilising self-administered questionnaires. Responses between cases (n = 1000) and controls (n = 663) were compared using multivariable logistic regression adjusted for age and gender. The model was further stratified based on inflammatory bowel disease (IBD) status (with IBD n = 741 without IBD n = 259). RESULTS: Smoking was associated with PSC only when IBD was present (OR, 0.5; 95% CI 0.4-0.7) but not among those PSC patients without IBD (OR, 0.9; 95% CI 0.7-1.2). Compared to controls, women with PSC (irrespective of the presence of IBD) were less likely to have received hormone replacement therapy (HRT; OR, 0.5; 95% CI 0.4-0.7) and were more likely to have recurrent urinary tract infections (OR, 1.6; 95% CI 1.2-2.3). PSC patients regardless of gender or IBD status were less likely to eat fish (OR, 0.4; 95% CI 0.3-0.6) and grilled/barbecued meat (OR, 0.8; 95% CI 0.7-0.9). In contrast, PSC patients with and without IBD were more likely to consume steak/burgers that were more well done (OR, 1.3; 95% CI 1.2-1.5). CONCLUSIONS: IBD (rather than PSC) is associated with smoking. Women with PSC are more likely to have recurrent urinary tract infections and less likely to receive HRT. Dietary intake and methods of food preparation differ in PSC patients when compared to controls.


Subject(s)
Cholangitis, Sclerosing/epidemiology , Environmental Exposure/adverse effects , Inflammatory Bowel Diseases/epidemiology , Smoking/adverse effects , Adolescent , Adult , Aged , Aged, 80 and over , Canada/epidemiology , Case-Control Studies , Child , Cholangitis, Sclerosing/etiology , Female , Humans , Inflammatory Bowel Diseases/etiology , Male , Middle Aged , Smoking/epidemiology , Surveys and Questionnaires , United States/epidemiology , Young Adult
17.
Genes Immun ; 14(3): 179-86, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23392275

ABSTRACT

Genome-wide association studies (GWAS) have successfully identified several loci associated with primary biliary cirrhosis (PBC) risk. Pathway analysis complements conventional GWAS analysis. We applied the recently developed linear combination test for pathways to datasets drawn from independent PBC GWAS in Italian and Canadian subjects. Of the Kyoto Encyclopedia of Genes and Genomes and BioCarta pathways tested, 25 pathways in the Italian dataset (449 cases, 940 controls) and 26 pathways in the Canadian dataset (530 cases, 398 controls) were associated with PBC susceptibility (P<0.05). After correcting for multiple comparisons, only the eight most significant pathways in the Italian dataset had FDR <0.25 with tumor necrosis factor/stress-related signaling emerging as the top pathway (P=7.38 × 10⁻4, FDR=0.18). Two pathways, phosphatidylinositol signaling and hedgehog signaling, were replicated in both datasets (P<0.05), and subjected to two additional complementary pathway tests. Both pathway signals remained significant in the Italian dataset on modified gene set enrichment analysis (P<0.05). In both GWAS, variants nominally associated with PBC were significantly overrepresented in the phosphatidylinositol pathway (Fisher exact P<0.05). These results point to established and novel pathway-level associations with inherited predisposition to PBC that, on further independent replication and functional validation, may provide fresh insights into PBC etiology.


Subject(s)
Genetic Predisposition to Disease/genetics , Genome-Wide Association Study/methods , Liver Cirrhosis, Biliary/genetics , Signal Transduction/genetics , Algorithms , Canada , Cohort Studies , Databases, Genetic , Female , Gene Frequency , Genotype , Humans , Italy , Linkage Disequilibrium , Male , Meta-Analysis as Topic , Middle Aged , Polymorphism, Single Nucleotide
18.
Aliment Pharmacol Ther ; 36(6): 517-33, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22817525

ABSTRACT

BACKGROUND: Autoimmune hepatitis (AIH), primary biliary cirrhosis (PBC) and primary sclerosing cholangitis (PSC) all nestle within the family of autoimmune liver diseases, whereby the result of immune-mediated liver injury gives rise to varied clinical presentations. Some patients demonstrate a phenotype whereby there is evidence of either PBC or PSC together with overlapping features of AIH. Due to an absence of well-validated diagnostic criteria and a lack of large therapeutic trials, treatment of overlap conditions is empiric and extrapolated from data derived from the primary autoimmune liver diseases. AIMS: To review overlaps in the context of autoimmune liver diseases. METHODS: General and specific review of published articles using PubMed, Medline and Ovid search engines, alongside pre-existing clinical management protocols, guidelines, and the authors' own knowledge of the published literature. RESULTS: The challenges in diagnosis, clinical presentation, determining natural history and outcome of overlaps are presented, as well as present-day management suggestions, some based on evidence, others on consensus and opinion. CONCLUSIONS: Overlapping autoimmune features, be they clinical, serological, histological or radiological are not infrequent, but appropriate diagnosis remains hindered by a lack of standardised diagnostic criteria. Optimum care for those with suspected overlap should thus focus on attention to detail over the fundamental aspects of timely secure diagnosis of the dominant disease entity. Clinicians should counsel patients carefully with regard to the risks and benefits of treatment, bearing in mind the paucity of randomised and controlled outcome data for medical interventions.


Subject(s)
Cholangitis, Sclerosing/diagnosis , Hepatitis, Autoimmune/diagnosis , Liver Cirrhosis, Biliary/diagnosis , Cholangitis, Sclerosing/immunology , Diagnosis, Differential , Genetic Predisposition to Disease , Hepatitis, Autoimmune/immunology , Humans , Liver Cirrhosis, Biliary/immunology , Phenotype , Syndrome
19.
Genes Immun ; 13(4): 328-35, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22257840

ABSTRACT

We fine mapped two primary biliary cirrhosis (PBC) risk loci, CLEC16A (C-type lectin domain family 16 member A)-suppressor of cytokine signaling 1 (SOCS1) and Spi-B protein (SPIB) and sequenced a locus, sialic acid acetylesterase (SIAE), proposed to harbor autoimmunity-associated mutations. In all, 1450 PBC cases and 2957 healthy controls were genotyped for 84 single-nucleotide polymorphisms (SNPs) across the CLEC16A-SOCS1 and SPIB loci. All 10 exons of the SIAE gene were resequenced in 381 cases and point substitutions of unknown significance assayed for activity and secretion. Fine mapping identified 26 SNPs across the CLEC16A-SOCS1 and 11 SNPs across the SPIB locus with significant association to PBC, the strongest signals at the CLEC16A-SOCS1 locus emanating from a SOCS1 intergenic SNP (rs243325; P=9.91 × 10(-9)) and at the SPIB locus from a SPIB intronic SNP (rs34944112; P=3.65 × 10(-9)). Among the associated SNPs at the CLEC16A-SOCS1 locus, two within the CLEC16A gene as well as one SOCS1 SNP (rs243325) remained significant after conditional logistic regression and contributed independently to risk. Sequencing of the SIAE gene and functional assays of newly identified variants revealed six patients with functional non-synonymous SIAE mutations (Fisher's P=9 × 10(-4) vs controls) We demonstrate independent effects on risk of PBC for CLEC16A, SOCS1 and SPIB variants, while identifying functionally defective SIAE variants as potential factors in risk for PBC.


Subject(s)
Acetylesterase/genetics , DNA-Binding Proteins/genetics , Lectins, C-Type/genetics , Liver Cirrhosis, Biliary/genetics , Monosaccharide Transport Proteins/genetics , Suppressor of Cytokine Signaling Proteins/genetics , Transcription Factors/genetics , Acetylesterase/metabolism , Alleles , Case-Control Studies , Chromosome Mapping/methods , DNA-Binding Proteins/metabolism , Enzyme Assays , Genetic Loci , Genetic Predisposition to Disease , Haplotypes , Humans , Lectins, C-Type/metabolism , Liver Cirrhosis, Biliary/immunology , Liver Cirrhosis, Biliary/metabolism , Logistic Models , Monosaccharide Transport Proteins/metabolism , Polymorphism, Single Nucleotide , Risk Factors , Suppressor of Cytokine Signaling 1 Protein , Suppressor of Cytokine Signaling Proteins/metabolism , Transcription Factors/metabolism
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