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1.
Entropy (Basel) ; 25(1)2023 Jan 09.
Article in English | MEDLINE | ID: mdl-36673270

ABSTRACT

What are conscious experiences? Can they combine to form new experiences? What are conscious subjects? Can they combine to form new subjects? Most attempts to answer these questions assume that spacetime, and some of its particles, are fundamental. However, physicists tell us that spacetime cannot be fundamental. Spacetime, they say, is doomed. We heed the physicists, and drop the assumption that spacetime is fundamental. We assume instead that subjects and experiences are entities beyond spacetime, not within spacetime. We make this precise in a mathematical theory of conscious agents, whose dynamics are described by Markov chains. We show how (1) agents combine into more complex agents, (2) agents fuse into simpler agents, and (3) qualia fuse to create new qualia. The possible dynamics of n agents form an n(n-1)-dimensional polytope with nn vertices-the Markov polytopeMn. The total fusions of n agents and qualia form an (n-1)-dimensional simplex-the fusion simplexFn. To project the Markovian dynamics of conscious agents onto scattering processes in spacetime, we define a new map from Markov chains to decorated permutations. Such permutations-along with helicities, or masses and spins-invariantly encode all physical information used to compute scattering amplitudes. We propose that spacetime and scattering processes are a data structure that codes for interactions of conscious agents: a particle in spacetime is a projection of the Markovian dynamics of a communicating class of conscious agents.

2.
Acta Biotheor ; 69(3): 319-341, 2021 Sep.
Article in English | MEDLINE | ID: mdl-33231784

ABSTRACT

Does natural selection favor veridical percepts-those that accurately (if not exhaustively) depict objective reality? Perceptual and cognitive scientists standardly claim that it does. Here we formalize this claim using the tools of evolutionary game theory and Bayesian decision theory. We state and prove the "Fitness-Beats-Truth (FBT) Theorem" which shows that the claim is false: If one starts with the assumption that perception involves inference to states of the objective world, then the FBT Theorem shows that a strategy that simply seeks to maximize expected-fitness payoff, with no attempt to estimate the "true" world state, does consistently better. More precisely, the FBT Theorem provides a quantitative measure of the extent to which the fitness-only strategy dominates the truth strategy, and of how this dominance increases with the size of the perceptual space. The FBT Theorem supports the Interface Theory of Perception (e.g. Hoffman et al. in Psychon Bull Rev https://doi.org/10.3758/s13423-015-0890-8 , 2015), which proposes that our perceptual systems have evolved to provide a species-specific interface to guide adaptive behavior, and not to provide a veridical representation of objective reality.


Subject(s)
Perception , Psychological Theory , Bayes Theorem , Biological Evolution , Selection, Genetic
3.
Entropy (Basel) ; 22(5)2020 Apr 30.
Article in English | MEDLINE | ID: mdl-33286286

ABSTRACT

A theory of consciousness, whatever else it may do, must address the structure of experience. Our perceptual experiences are richly structured. Simply seeing a red apple, swaying between green leaves on a stout tree, involves symmetries, geometries, orders, topologies, and algebras of events. Are these structures also present in the world, fully independent of their observation? Perceptual theorists of many persuasions-from computational to radical embodied-say yes: perception veridically presents to observers structures that exist in an observer-independent world; and it does so because natural selection shapes perceptual systems to be increasingly veridical. Here we study four structures: total orders, permutation groups, cyclic groups, and measurable spaces. We ask whether the payoff functions that drive evolution by natural selection are homomorphisms of these structures. We prove, in each case, that generically the answer is no: as the number of world states and payoff values go to infinity, the probability that a payoff function is a homomorphism goes to zero. We conclude that natural selection almost surely shapes perceptions of these structures to be non-veridical. This is consistent with the interface theory of perception, which claims that natural selection shapes perceptual systems not to provide veridical perceptions, but to serve as species-specific interfaces that guide adaptive behavior. Our results present a constraint for any theory of consciousness which assumes that structure in perceptual experience is shaped by natural selection.

5.
Ann N Y Acad Sci ; 1458(1): 44-64, 2019 12.
Article in English | MEDLINE | ID: mdl-31493298

ABSTRACT

The prevalent view in cognitive science is that we construct our perception of reality in real time. But could we be misinterpreting the content of our perceptual experiences? Does what we perceive with our brain and senses reflect the true nature of reality? Might evolution have shaped our perceptions to guide adaptive behavior, without enabling us to see reality as it actually is? In a discussion moderated by Steve Paulson, cognitive scientist Donald D. Hoffman and neurologist Suzanne O'Sullivan analyze these questions and their profound implications for our understanding of human consciousness.


Subject(s)
Brain/physiology , Consciousness/physiology , Brain Mapping , Cognition , Humans , Models, Neurological , Neurology/trends , Neurosciences/methods , Perception , Thinking
6.
Ann N Y Acad Sci ; 1458(1): 65-69, 2019 12.
Article in English | MEDLINE | ID: mdl-31396967

ABSTRACT

We think of spacetime as an ancient stage on which life and consciousness in due course evolved. But the logic of evolution may force us to think again.


Subject(s)
Biological Evolution , Consciousness , Perception , Artificial Intelligence , Humans , Physical Phenomena , Physics , User-Computer Interface
7.
Perception ; 45(5): 527-551, 2016 May.
Article in English | MEDLINE | ID: mdl-26841962

ABSTRACT

What visual textures do people like and why? Here, we test whether the ecological valence theory proposed for color preferences can also predict people's preferences for visual texture. According to the theory, people should like visual textures associated with positive objects or entities and dislike visual textures associated with negative objects or entities. We compare the results for the ecological model with a more traditional texture-preference model based on computational features and find that the ecological model performs reasonably well considering its lower complexity, explaining 63% of the variance in the human preference data.

8.
Psychon Bull Rev ; 22(6): 1551-76, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26424222

ABSTRACT

We propose that selection favors nonveridical perceptions that are tuned to fitness. Current textbooks assert, to the contrary, that perception is useful because, in the normal case, it is veridical. Intuition, both lay and expert, clearly sides with the textbooks. We thus expected that some commentators would reject our proposal and provide counterarguments that could stimulate a productive debate. We are pleased that several commentators did indeed rise to the occasion and have argued against our proposal. We are also pleased that several others found our proposal worth exploring and have offered ways to test it, develop it, and link it more deeply to the history of ideas in the science and philosophy of perception. To both groups of commentators: thank you. Point and counterpoint, backed by data and theory, is the essence of science. We hope that the exchange recorded here will advance the scientific understanding of perception and its evolution. In what follows, we respond to the commentaries in alphabetical order.


Subject(s)
Biological Evolution , Perception , Psychological Theory , Humans
9.
Psychon Bull Rev ; 22(6): 1480-506, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26384988

ABSTRACT

Perception is a product of evolution. Our perceptual systems, like our limbs and livers, have been shaped by natural selection. The effects of selection on perception can be studied using evolutionary games and genetic algorithms. To this end, we define and classify perceptual strategies and allow them to compete in evolutionary games in a variety of worlds with a variety of fitness functions. We find that veridical perceptions--strategies tuned to the true structure of the world--are routinely dominated by nonveridical strategies tuned to fitness. Veridical perceptions escape extinction only if fitness varies monotonically with truth. Thus, a perceptual strategy favored by selection is best thought of not as a window on truth but as akin to a windows interface of a PC. Just as the color and shape of an icon for a text file do not entail that the text file itself has a color or shape, so also our perceptions of space-time and objects do not entail (by the Invention of Space-Time Theorem) that objective reality has the structure of space-time and objects. An interface serves to guide useful actions, not to resemble truth. Indeed, an interface hides the truth; for someone editing a paper or photo, seeing transistors and firmware is an irrelevant hindrance. For the perceptions of H. sapiens, space-time is the desktop and physical objects are the icons. Our perceptions of space-time and objects have been shaped by natural selection to hide the truth and guide adaptive behaviors. Perception is an adaptive interface.


Subject(s)
Biological Evolution , Perception , Psychological Theory , Cognition , Humans , Learning
10.
Front Psychol ; 5: 577, 2014.
Article in English | MEDLINE | ID: mdl-24987382

ABSTRACT

Current models of visual perception typically assume that human vision estimates true properties of physical objects, properties that exist even if unperceived. However, recent studies of perceptual evolution, using evolutionary games and genetic algorithms, reveal that natural selection often drives true perceptions to extinction when they compete with perceptions tuned to fitness rather than truth: Perception guides adaptive behavior; it does not estimate a preexisting physical truth. Moreover, shifting from evolutionary biology to quantum physics, there is reason to disbelieve in preexisting physical truths: Certain interpretations of quantum theory deny that dynamical properties of physical objects have definite values when unobserved. In some of these interpretations the observer is fundamental, and wave functions are compendia of subjective probabilities, not preexisting elements of physical reality. These two considerations, from evolutionary biology and quantum physics, suggest that current models of object perception require fundamental reformulation. Here we begin such a reformulation, starting with a formal model of consciousness that we call a "conscious agent." We develop the dynamics of interacting conscious agents, and study how the perception of objects and space-time can emerge from such dynamics. We show that one particular object, the quantum free particle, has a wave function that is identical in form to the harmonic functions that characterize the asymptotic dynamics of conscious agents; particles are vibrations not of strings but of interacting conscious agents. This allows us to reinterpret physical properties such as position, momentum, and energy as properties of interacting conscious agents, rather than as preexisting physical truths. We sketch how this approach might extend to the perception of relativistic quantum objects, and to classical objects of macroscopic scale.

11.
Toxicon ; 60(5): 752-9, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22683679

ABSTRACT

We report on two low-molecular weight proteins that are stored in the venom of queen red imported fire ants (Solenopsis invicta). Translated amino acid sequences identified one protein to have 74.8% identity with the Sol i 2w worker allergen, and the other protein was found to have 96/97% identity with Sol i 4.01w/4.02w worker allergens. Both Sol i 2 and Sol i 4 queen and worker proteins were expressed using pEXP1-DEST vector in SHuffle™ T7 Express lysY Escherichia coli. Proteins were expressed at significant concentrations, as opposed to the µg/ml amounts by our previous expression methods, enabling further study of these proteins. Sol i 2q protein bound weakly to human IgE, sera pooled from allergic patients, whereas Sol i 2w, Sol i 4.01w, and Sol i 4q proteins bound strongly. Despite Sol i 2w and Sol i 2q proteins having 74.8% identity, the queen protein is less immuno-reactive than the worker allergen. This finding is consistent with allergic individuals being less sensitive to queen than worker venom.


Subject(s)
Ant Venoms/genetics , Ant Venoms/metabolism , Ants/chemistry , Insect Proteins/genetics , Insect Proteins/metabolism , Amino Acid Sequence , Animals , Ant Venoms/immunology , Base Sequence , Escherichia coli , Genetic Vectors/genetics , Immune Sera/metabolism , Immunoglobulin E/metabolism , Insect Proteins/immunology , Molecular Sequence Data , Sequence Analysis, DNA , Sequence Homology , Texas
12.
Perception ; 41(9): 1073-91, 2012.
Article in English | MEDLINE | ID: mdl-23409373

ABSTRACT

Marr proposed that human vision constructs "a true description of what is there". He argued that to understand human vision one must discover the features of the world it recovers and the constraints it uses in the process. Bayesian decision theory (BDT) is used in modem vision research as a probabilistic framework for understanding human vision along the lines laid out by Marr. Marr's contribution to vision research is substantial and justly influential. We propose, however, that evolution by natural selection does not, in general, favor perceptions that are true descriptions of the objective world. Instead, research with evolutionary games shows that perceptual systems tuned solely to fitness routinely outcompete those tuned to truth. Fitness functions depend not just on the true state of the world, but also on the organism, its state, and the type of action. Thus, fitness and truth are distinct. Natural selection depends only on expected fitness. It shapes perceptual systems to guide fitter behavior, not to estimate truth. To study perception in an evolutionary context, we introduce the framework of Computational Evolutionary Perception (CEP). We show that CEP subsumes BDT, and reinterprets BDT as evaluating expected fitness rather than estimating truth.


Subject(s)
Biological Evolution , Vision, Ocular/physiology , Visual Perception/physiology , Bayes Theorem , Humans
13.
J Mol Biol ; 415(4): 635-48, 2012 Jan 27.
Article in English | MEDLINE | ID: mdl-22100449

ABSTRACT

Sol i 2 is a potent allergen from the venom of red imported fire ant, which contains allergens Sol i 1, Sol i 2, Sol i 3, and Sol i 4 that are known to be powerful triggers of anaphylaxis. Sol i 2 causes IgE antibody production in about one-third of individuals stung by fire ants. Baculovirus recombinant dimeric Sol i 2 was crystallized as a native and selenomethionyl-derivatized protein, and its structure has been determined by single-wavelength anomalous dispersion at 2.6 Å resolution. The overall fold of each subunit consists of five helices that enclose a central hydrophobic cavity. The structure is stabilized by three intramolecular disulfide bridges and one intermolecular disulfide bridge. The nearest structural homologue is the sequence-unrelated odorant binding protein and pheromone binding protein LUSH of the fruit fly Drosophila, which may suggest a similar biological function. To test this hypothesis, we measured the reversible binding of various pheromones, plant odorants, and other ligands to Sol i 2 by the changes in N-phenyl-1-naphthylamine fluorescence emission upon binding of ligands that compete with N-phenyl-1-naphthylamine. The highest binding affinity was observed for hydrophobic ligands such as aphid alarm pheromone (E)-ß-farnesene, analogs of ant alarm pheromones, and plant volatiles decane, undecane, and ß-caryophyllene. Conceivably, Sol i 2 may play a role in capturing and/or transporting small hydrophobic ligands such as pheromones, odors, fatty acids, or short-living hydrophobic primers. Molecular surface analysis, in combination with sequence alignment, can explain the serological cross-reactivity observed between some ant species.


Subject(s)
Allergens/chemistry , Ant Venoms/chemistry , Insect Proteins/chemistry , Allergens/metabolism , Amino Acid Sequence , Animals , Ant Venoms/immunology , Ant Venoms/metabolism , Binding Sites , Binding, Competitive , Crystallography, X-Ray , Insect Proteins/metabolism , Ligands , Models, Biological , Models, Molecular , Molecular Sequence Data , Protein Binding , Protein Structure, Secondary , Sequence Homology, Amino Acid
14.
J Biol Chem ; 286(18): 16091-100, 2011 May 06.
Article in English | MEDLINE | ID: mdl-21393249

ABSTRACT

The type I transmembrane protein with epidermal growth factor and two follistatin motifs 2 (TMEFF2) is expressed in brain and prostate and overexpressed in prostate cancer, but its role in this disease is unclear. Several studies have suggested that TMEFF2 plays a role in suppressing the growth and invasive potential of human cancer cells, whereas others suggest that the shed portion of TMEFF2, which lacks the cytoplasmic region, has a growth-promoting activity. Here we show that TMEFF2 has a dual mode of action. Ectopic expression of wild-type full-length TMEFF2 inhibits soft agar colony formation, cellular invasion, and migration and increases cellular sensitivity to apoptosis. However, expression of the ectodomain portion of TMEFF2 increases cell proliferation. Using affinity chromatography and mass spectrometry, we identify sarcosine dehydrogenase (SARDH), the enzyme that converts sarcosine to glycine, as a TMEFF2-interacting protein. Co-immunoprecipitation and immunofluorescence analysis confirms the interaction of SARDH with full-length TMEFF2. The ectodomain does not bind to SARDH. Moreover, expression of the full-length TMEFF2 but not the ectodomain results in a decreased level of sarcosine in the cells. These results suggest that the tumor suppressor activity of TMEFF2 requires the cytoplasmic/transmembrane portion of the protein and correlates with its ability to bind to SARDH and to modulate the level of sarcosine.


Subject(s)
Membrane Proteins/metabolism , Neoplasm Proteins/metabolism , Sarcosine Dehydrogenase/metabolism , Sarcosine/metabolism , Tumor Suppressor Proteins/metabolism , Animals , Cell Line, Tumor , Glycine/genetics , Glycine/metabolism , HEK293 Cells , Humans , Male , Membrane Proteins/genetics , Mice , NIH 3T3 Cells , Neoplasm Proteins/genetics , Protein Binding , Protein Structure, Tertiary , Sarcosine/genetics , Sarcosine Dehydrogenase/genetics , Tumor Suppressor Proteins/genetics
15.
Evol Psychol ; 9(2): 137-46, 2011 Apr 06.
Article in English | MEDLINE | ID: mdl-22947961

ABSTRACT

The limbal ring of the eye appears as a dark annulus where the iris meets the sclera. Both width and opacity of the limbal ring are influenced by iris pigmentation and optical properties of the region. With age the limbal ring becomes less prominent, making it a probabilistic indicator of youth and health. This raises the question: Are judgments of facial attractiveness sensitive to this signal in a potentially adaptive way? Here we show that the answer is yes. For male and female observers, both male and female faces with a dark and distinct limbal ring are rated as more attractive than otherwise identical faces with no limbal ring. This result is observed not just for upright faces but also for inverted faces, suggesting that the limbal ring is processed primarily as a local feature rather than as a configural feature in the analysis of facial beauty. We also discuss directions for future research that can clarify the role of the limbal ring in the visual perception of facial attractiveness.


Subject(s)
Beauty , Courtship , Eye Color , Eye , Sexuality , Face , Female , Humans , Judgment , Male
16.
J Theor Biol ; 266(4): 504-15, 2010 Oct 21.
Article in English | MEDLINE | ID: mdl-20659478

ABSTRACT

Does natural selection favor veridical perceptions, those that more accurately depict the objective environment? Students of perception often claim that it does. But this claim, though influential, has not been adequately tested. Here we formalize the claim and a few alternatives. To test them, we introduce "interface games," a class of evolutionary games in which perceptual strategies compete. We explore, in closed-form solutions and Monte Carlo simulations, some simpler games that assume frequency-dependent selection and complete mixing in infinite populations. We find that veridical perceptions can be driven to extinction by non-veridical strategies that are tuned to utility rather than objective reality. This suggests that natural selection need not favor veridical perceptions, and that the effects of selection on sensory perception deserve further study.


Subject(s)
Perception , Selection, Genetic , Animals , Biological Evolution , Environment , Game Theory , Normal Distribution
17.
Curr Opin Allergy Clin Immunol ; 10(4): 342-6, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20445444

ABSTRACT

PURPOSE OF REVIEW: The review summarizes knowledge about ants that are known to sting humans and their venoms. RECENT FINDINGS: Fire ants and Chinese needle ants are showing additional spread of range. Fire ants are now important in much of Asia. Venom allergens have been characterized and studied for fire ants and jack jumper ants. The first studies of Pachycondyla venoms have been reported, and a major allergen is Pac c 3, related to Sol i 3 from fire ants. There are very limited data available for other ant groups. SUMMARY: Ants share some common proteins in venoms, but each group appears to have a number of possibly unique components. Further proteomic studies should expand and clarify our knowledge of these fascinating animals.


Subject(s)
Ant Venoms , Ants/immunology , Hypersensitivity/etiology , Insect Bites and Stings/immunology , Allergens/adverse effects , Allergens/chemistry , Allergens/immunology , Animals , Ant Venoms/adverse effects , Ant Venoms/chemistry , Ant Venoms/immunology , Ants/classification , Asia , Humans , Hypersensitivity/immunology , Insect Proteins/adverse effects , Insect Proteins/chemistry , Insect Proteins/immunology , North America
18.
Glycobiology ; 19(5): 518-26, 2009 May.
Article in English | MEDLINE | ID: mdl-19179460

ABSTRACT

Intelectin is an extracellular animal lectin found in chordata. Although human and mouse intelectin-1 recognize galactofuranosyl residues included in cell walls of various microorganisms, the physiological function of mammalian intelectin had been unclear. In this study, we found that human intelectin-1 was a serum protein and bound to Mycobacterium bovis bacillus Calmette-Guérin (BCG). Human intelectin-1-binding to BCG was inhibited by Ca(2+)-depletion, galactofuranosyl disaccharide, ribose, or xylose, and was dependent on the trimeric structure of human intelectin-1. Although monomeric, mouse intelectin-1 bound to BCG, with its C-terminal region contributing to efficient binding. Human intelectin-1-transfected cells not only secreted intelectin-1 into culture supernatant but also expressed intelectin-1 on the cell surface. The cell surface intelectin-1 was not a glycosylphosphatidylinositol-anchored membrane protein. Intelectin-1-transfected cells captured BCG more than untransfected cells, and the BCG adherence was inhibited by an inhibitory saccharide of intelectin-1. Intelectin-1-preincubated cells took up BCG more than untreated cells, but the adhesion of intelectin-1-bound BCG was the same as that of untreated BCG. Mouse macrophages phagocytosed BCG more efficiently in medium containing mouse intelectin-1 than in control medium. These results indicate that intelectin is a host defense lectin that assists phagocytic clearance of microorganisms.


Subject(s)
BCG Vaccine/immunology , Cell Membrane/immunology , Cytokines/immunology , Lectins/immunology , Mycobacterium bovis/metabolism , Phagocytosis/immunology , Amino Acid Sequence , Animals , Cells, Cultured , GPI-Linked Proteins , Humans , Macrophages, Alveolar/immunology , Mice , Mice, Inbred C57BL , Molecular Sequence Data , Protein Structure, Quaternary , Rabbits
20.
J Mol Biol ; 383(1): 178-85, 2008 Oct 31.
Article in English | MEDLINE | ID: mdl-18761353

ABSTRACT

Fire ant venom is an extremely potent allergy-inducing agent containing four major allergens, Sol i 1 to Sol i 4, which are the most frequent cause of hypersensitivity reactions to hymenoptera in the southern USA. The crystal structure of recombinant (Baculovirus) major fire ant allergen Sol i 3 has been determined to a resolution of 3.1 A by the method of molecular replacement. The secondary-structure elements of Sol i 3 are arranged in an alpha-beta-alpha sandwich fold consisting of a central antiparallel beta-sheet surrounded on both sides by alpha helices. The overall structure is very similar to that of the homologous wasp venom allergen Ves v 5 with major differences occurring in the solvent-exposed loop regions that contain amino acid insertions. Consequently, the limited conservation of surface chemical properties and topology between Sol i 3 and Ves v 5 may explain the observed lack of relevant cross-reactivity. It is concluded that Sol i 3 recognizes immunoglobulin E antibodies with a distinct set of its own epitopes, which are different from those of Ves v 5. Indeed, the molecular area in Sol i 3 covered by non-conserved residues is large enough to accommodate four unique Sol i 3 epitopes.


Subject(s)
Allergens/chemistry , Ant Venoms/chemistry , Insect Proteins/chemistry , Allergens/genetics , Amino Acid Sequence , Animals , Ant Venoms/genetics , Ant Venoms/immunology , Ants/chemistry , Ants/genetics , Ants/immunology , Cross Reactions , Crystallography, X-Ray , Insect Proteins/genetics , Insect Proteins/immunology , Models, Molecular , Molecular Sequence Data , Protein Conformation , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Sequence Homology, Amino Acid
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