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1.
Genome Announc ; 5(45)2017 Nov 09.
Article in English | MEDLINE | ID: mdl-29122875

ABSTRACT

We report here the complete genome sequences of three border disease virus (BDV) strains of the same subgenotype isolated in Switzerland from a sheep, a cow, and a pig, respectively. This is the first report of full-length sequences of a tentatively new subgenotype isolated from three different species of cloven-hoofed farm animals.

2.
Vet Res ; 47(1): 117, 2016 11 21.
Article in English | MEDLINE | ID: mdl-27871316

ABSTRACT

Porcine reproductive and respiratory syndrome virus (PRRSV) is an arterivirus responsible for a widespread contagious disease of domestic pigs with high economic impact. Switzerland is one of the rare PRRSV-free countries in Europe, although sporadic outbreaks have occurred in the past. The PRRSV isolate IVI-1173 from the short outbreak in Switzerland in 2012 was entirely sequenced, and a functional full-length cDNA clone was constructed. Genetic and antigenic characterization of IVI-1173 revealed the importance of amino acid 90 of the nucleocapsid protein N as part of a conformational epitope. IVI-1173 was not detected by SDOW17, a monoclonal antibody against N widely used to detect PRRSV-infected cells. Substitution of alanine at position 90 of N [N(A90)] with a threonine [N(T90)] restored reactivity of vIVI1173-N(T90) to SDOW17 completely. The relevance of this amino acid for the conformational SDOW17 epitope of PRRSV N was further confirmed by the opposite substitution in a functional cDNA clone of the genotype 2 isolate RVB-581. Finally, N proteins from ten genotype 1 strains differing from threonine at position 90 were analysed for reactivity with SDOW17. N(A90) totally disrupted or severely affected the epitope in 7 out of 8 strains tested. Based on these findings, 225 genotype 1 strains were screened for the prevalence of N(A90). N(A90) is rare in classical subtype 1 and in subtype 3 strains, but is frequent in Russian subtype 1 (70%) and in subtype 2 (45%) isolates. In conclusion, this study highlights the variable antigenic properties of N among genotype 1 PRRSV strains.


Subject(s)
Antigens, Viral/immunology , Nucleocapsid/immunology , Porcine respiratory and reproductive syndrome virus/immunology , Animals , Antibodies, Viral/immunology , Antigens, Viral/genetics , Disease Outbreaks/veterinary , Epitopes/genetics , Epitopes/immunology , Female , Flow Cytometry/veterinary , Fluorescent Antibody Technique/veterinary , Male , Nucleocapsid/genetics , Phylogeny , Porcine Reproductive and Respiratory Syndrome/epidemiology , Porcine Reproductive and Respiratory Syndrome/virology , Porcine respiratory and reproductive syndrome virus/genetics , Sequence Alignment , Sequence Analysis, DNA/veterinary , Swine , Switzerland/epidemiology
3.
J Gen Virol ; 96(9): 2623-2635, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26018962

ABSTRACT

Classical swine fever virus (CSFV) causes a highly contagious disease in pigs that can range from a severe haemorrhagic fever to a nearly unapparent disease, depending on the virulence of the virus strain. Little is known about the viral molecular determinants of CSFV virulence. The nonstructural protein NS4B is essential for viral replication. However, the roles of CSFV NS4B in viral genome replication and pathogenesis have not yet been elucidated. NS4B of the GPE- vaccine strain and of the highly virulent Eystrup strain differ by a total of seven amino acid residues, two of which are located in the predicted trans-membrane domains of NS4B and were described previously to relate to virulence, and five residues clustering in the N-terminal part. In the present study, we examined the potential role of these five amino acids in modulating genome replication and determining pathogenicity in pigs. A chimeric low virulent GPE- -derived virus carrying the complete Eystrup NS4B showed enhanced pathogenicity in pigs. The in vitro replication efficiency of the NS4B chimeric GPE- replicon was significantly higher than that of the replicon carrying only the two Eystrup-specific amino acids in NS4B. In silico and in vitro data suggest that the N-terminal part of NS4B forms an amphipathic α-helix structure. The N-terminal NS4B with these five amino acid residues is associated with the intracellular membranes. Taken together, this is the first gain-of-function study showing that the N-terminal domain of NS4B can determine CSFV genome replication in cell culture and viral pathogenicity in pigs.


Subject(s)
Classical Swine Fever Virus/physiology , Classical Swine Fever Virus/pathogenicity , Classical Swine Fever/virology , Intracellular Membranes/virology , Viral Nonstructural Proteins/chemistry , Viral Nonstructural Proteins/metabolism , Virus Replication , Amino Acid Motifs , Animals , Classical Swine Fever Virus/chemistry , Classical Swine Fever Virus/genetics , Protein Structure, Secondary , Protein Transport , Swine , Viral Nonstructural Proteins/genetics , Virulence
4.
Vet Microbiol ; 176(1-2): 97-108, 2015 Mar 23.
Article in English | MEDLINE | ID: mdl-25623013

ABSTRACT

Schmallenberg virus (SBV), an arthropod-borne orthobunyavirus was first detected in 2011 in cattle suffering from diarrhea and fever. The most severe impact of an SBV infection is the induction of malformations in newborns and abortions. Between 2011 and 2013 SBV spread throughout Europe in an unprecedented epidemic wave. SBV contains a tripartite genome consisting of the three negative-sense RNA segments L, M, and S. The virus is usually isolated from clinical samples by inoculation of KC (insect) or BHK-21 (mammalian) cells. Several virus passages are required to allow adaptation of SBV to cells in vitro. In the present study, the porcine SK-6 cell line was used for isolation and passaging of SBV. SK-6 cells proved to be more sensitive to SBV infection and allowed to produce higher titers more rapidly as in BHK-21 cells after just one passage. No adaptation was required. In order to determine the in vivo genetic stability of SBV during an epidemic spread of the virus the nucleotide sequence of the genome from seven SBV field isolates collected in summer 2012 in Switzerland was determined and compared to other SBV sequences available in GenBank. A total of 101 mutations, mostly transitions randomly dispersed along the L and M segment were found when the Swiss isolates were compared to the first SBV isolated late 2011 in Germany. However, when these mutations were studied in detail, a previously described hypervariable region in the M segment was identified. The S segment was completely conserved among all sequenced SBV isolates. To assess the in vitro genetic stability of SBV, three isolates were passage 10 times in SK-6 cells and sequenced before and after passaging. Between two and five nt exchanges per genome were found. This low in vitro mutation rate further demonstrates the suitability of SK-6 cells for SBV propagation.


Subject(s)
Bunyaviridae Infections/veterinary , Cattle Diseases/virology , Orthobunyavirus/genetics , Animals , Bunyaviridae Infections/epidemiology , Bunyaviridae Infections/virology , Cattle , Cattle Diseases/epidemiology , Cell Line , Europe/epidemiology , Female , Mutation , Pregnancy , Swine
5.
Vet Res ; 45: 64, 2014 Jun 13.
Article in English | MEDLINE | ID: mdl-24928313

ABSTRACT

Bluetongue virus (BTV) is an arthropod-borne pathogen that causes an often fatal, hemorrhagic disease in ruminants. Different BTV serotypes occur throughout many temperate and tropical regions of the world. In 2006, BTV serotype 8 (BTV-8) emerged in Central and Northern Europe for the first time. Although this outbreak was eventually controlled using inactivated virus vaccines, the epidemic caused significant economic losses not only from the disease in livestock but also from trade restrictions. To date, BTV vaccines that allow simple serological discrimination of infected and vaccinated animals (DIVA) have not been approved for use in livestock. In this study, we generated recombinant RNA replicon particles based on single-cycle vesicular stomatitis virus (VSV) vectors. Immunization of sheep with infectious VSV replicon particles expressing the outer capsid VP2 protein of BTV-8 resulted in induction of BTV-8 serotype-specific neutralizing antibodies. After challenge with a virulent BTV-8 strain, the vaccinated animals neither developed signs of disease nor showed viremia. In contrast, immunization of sheep with recombinant VP5 - the second outer capsid protein of BTV - did not confer protection. Discrimination of infected from vaccinated animals was readily achieved using an ELISA for detection of antibodies against the VP7 antigen. These data indicate that VSV replicon particles potentially represent a safe and efficacious vaccine platform with which to control future outbreaks by BTV-8 or other serotypes, especially in previously non-endemic regions where discrimination between vaccinated and infected animals is crucial.


Subject(s)
Bluetongue virus/immunology , Bluetongue/prevention & control , Capsid Proteins/genetics , Sheep Diseases/prevention & control , Vesiculovirus/genetics , Viral Vaccines/immunology , Animals , Antibodies, Neutralizing/blood , Antibodies, Viral/blood , Bluetongue/virology , Bluetongue virus/genetics , Capsid Proteins/immunology , Genetic Vectors , Neutralization Tests/veterinary , Replicon , Sheep , Sheep Diseases/virology , Vaccines, Synthetic/genetics , Vaccines, Synthetic/immunology , Vesiculovirus/immunology , Viral Vaccines/genetics
6.
PLoS One ; 8(7): e71019, 2013.
Article in English | MEDLINE | ID: mdl-23923045

ABSTRACT

A single-step, multiplex, real-time polymerase chain reaction (RT-PCR) was developed for the simultaneous and differential laboratory diagnosis of Classical swine fever virus (CSFV) and African swine fever virus (ASFV) alongside an exogenous internal control RNA (IC-RNA). Combining a single extraction methodology and primer and probe sets for detection of the three target nucleic acids CSFV, ASFV and IC-RNA, had no effect on the analytical sensitivity of the assay and the new triplex RT-PCR was comparable to standard PCR techniques for CSFV and ASFV diagnosis. After optimisation the assay had a detection limit of 5 CSFV genome copies and 22 ASFV genome copies. Analytical specificity of the triplex assay was validated using a panel of viruses representing 9 of the 11 CSFV subgenotypes, at least 8 of the 22 ASFV genotypes as well as non-CSFV pestiviruses. Positive and negative clinical samples from animals infected experimentally, due to field exposure or collected from the UK which is free from both swine diseases, were used to evaluate the diagnostic sensitivity and specificity for detection of both viruses. The diagnostic sensitivity was 100% for both viruses whilst diagnostic specificity estimates were 100% for CSFV detection and 97.3% for ASFV detection. The inclusion of a heterologous internal control allowed identification of false negative results, which occurred at a higher level than expected. The triplex assay described here offers a valuable new tool for the differential detection of the causative viruses of two clinically indistinguishable porcine diseases, whose geographical occurrence is increasingly overlapping.


Subject(s)
African Swine Fever Virus/genetics , African Swine Fever/diagnosis , Asfarviridae/genetics , DNA Virus Infections/diagnosis , Real-Time Polymerase Chain Reaction/methods , Swine Diseases/diagnosis , Swine/virology , African Swine Fever/virology , African Swine Fever Virus/isolation & purification , Animals , Asfarviridae/isolation & purification , DNA Virus Infections/veterinary , DNA Virus Infections/virology , Sensitivity and Specificity , Swine Diseases/virology
7.
Vet Microbiol ; 166(1-2): 165-73, 2013 Sep 27.
Article in English | MEDLINE | ID: mdl-23834964

ABSTRACT

Toggenburg Orbivirus (TOV) is the prototype of bluetongue virus serotype 25 (BTV-25). It was first detected in goats in Switzerland in 2008. The virus does not induce clinical signs in infected goats. In field samples viral RNA could be detected only in goats and never in other ruminants. BTV-25 RNA was repeatedly detected for more than one year in the blood of goats from a single flock in Principality of Liechtenstein. Since viral persistence over such a long period has never been reported for bluetongue, blood samples from 110 goats and 2 sheep of that flock were collected during a period of up to two years and analyzed for the presence of BTV-25 RNA and antibodies. Most of the animals which tested positive for BTV-25 RNA, remained positive during the whole investigation period. Moreover, five of these goats were BTV-25 RNA positive over a period of 19-25 months. A weak antibody response against BTV VP7 was commonly observed. As BTV-25 cannot be propagated in any culture system, the presence of virus could only be demonstrated in samples by viral RNA detection using RT-qPCR. To address the question of infectivity of the virus in blood from long-term positive animals, goats were experimentally infected with this blood. Viral replication was demonstrated by increasing RNA amounts. Thus, our findings provide evidence that BTV-25 can persist much longer in an infected host than known so far for other BTV serotypes. Hence, persistence of infectious BTV represents an additional important factor in BTV epidemiology.


Subject(s)
Bluetongue virus/physiology , Bluetongue/virology , Goat Diseases/virology , Animals , Antibodies, Viral/immunology , Bluetongue/immunology , Bluetongue virus/genetics , Bluetongue virus/immunology , Bluetongue virus/isolation & purification , Goat Diseases/immunology , Goats , Real-Time Polymerase Chain Reaction , Sheep , Sheep Diseases/immunology , Sheep Diseases/virology , Switzerland
8.
Vet Microbiol ; 161(3-4): 274-85, 2013 Jan 25.
Article in English | MEDLINE | ID: mdl-22902189

ABSTRACT

New generations of Classical Swine Fever virus (CSFV) marker vaccines have recently been developed in order to make emergency vaccination in case of a CSF outbreak more feasible. However, the application of a marker vaccine is dependent on the availability of an accompanying discriminatory test allowing differentiation of infected from vaccinated animals (DIVA). CP7_E2alf, the most promising live marker vaccine candidate currently available, is a genetically modified Bovine Viral Diarrhea virus expressing the E2 glycoprotein of CSFV strain Alfort/187. The DIVA principle going along with CP7_E2alf is based on the detection of CSFV E(rns)-specific antibodies that are raised in the host upon CSFV infection but not after vaccination with the marker vaccine. The aim of this study was to develop novel DIVA tests to be used in combination with CP7_E2alf. Two indirect ELISAs (one for screening, the other one for confirmation purposes) using bacterially expressed recombinant E(rns) proteins were designed and evaluated. Both ELISAs detected CSFV-specific antibodies against a broad range of strains and genotypes, and as early as 10 days after infection. They were able to distinguish CSFV-infected pigs from pigs vaccinated with CP7_E2alf and allowed discrimination of antibodies against ruminant pestiviruses in both, sera from domestic pigs and wild boar. Sensitivity and specificity of the screening ELISA was ≥95%. Thus, the ELISAs represent promising DIVA diagnostic tools, as well as an alternative to traditional pestivirus antibody differentiation by serum neutralization test.


Subject(s)
Classical Swine Fever Virus/classification , Classical Swine Fever Virus/immunology , Classical Swine Fever/virology , Enzyme-Linked Immunosorbent Assay/methods , Viral Vaccines/administration & dosage , Animals , Antibodies, Viral/analysis , Antibodies, Viral/immunology , Cattle , Classical Swine Fever/diagnosis , Classical Swine Fever/immunology , Classical Swine Fever/prevention & control , Classical Swine Fever Virus/genetics , Diarrhea Viruses, Bovine Viral/immunology , Swine , Vaccines, Attenuated/administration & dosage , Vaccines, Attenuated/immunology , Vaccines, Marker/analysis , Vaccines, Marker/immunology , Viral Vaccines/immunology
9.
Virology ; 433(1): 45-54, 2012 Nov 10.
Article in English | MEDLINE | ID: mdl-22868042

ABSTRACT

The E(rns) glycoprotein of classical swine fever virus (CSFV) has been studied in detail concerning biochemical and functional properties, whereas less is known about its antigenic structure. In order to define epitopes recognized by CSFV-specific antibodies, the binding sites of seven E(rns)-specific monoclonal antibodies were investigated. Mapping experiments using chimeric E(rns) proteins, site-directed mutagenesis and an overlapping peptide library identified one antigenic region located between amino acids (aa) 55 to 110 on the E(rns) protein of CSFV Alfort/187. The domain comprises three linear motifs *(64)TNYTCCKLQ(72), (73)RHEWNKHGW(81), and (88)DPWIQLMNR(96), respectively, and two aa at position 102 and 107 that are crucial for the interaction with antibodies. Additionally, the presentation of the epitope in a correct conformation is mandatory for an efficient antibody binding. These findings allow a better understanding of the organization and the structure of the E(rns) and provide valuable information with regard to the development of E(rns)-based diagnostic tests.


Subject(s)
Antibodies, Monoclonal/immunology , Classical Swine Fever Virus/genetics , Membrane Glycoproteins/chemistry , Viral Envelope Proteins/chemistry , Amino Acid Motifs , Animals , Antibodies, Monoclonal/chemistry , Antibodies, Monoclonal/genetics , Binding Sites, Antibody , Classical Swine Fever Virus/immunology , Epitope Mapping , Epitopes , Membrane Glycoproteins/genetics , Membrane Glycoproteins/immunology , Molecular Sequence Data , Mutagenesis, Site-Directed , Peptide Library , Protein Binding , Protein Conformation , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/immunology , Swine , Viral Envelope Proteins/genetics , Viral Envelope Proteins/immunology
10.
Res Vet Sci ; 91(3): e163-8, 2011 Dec.
Article in English | MEDLINE | ID: mdl-21458013

ABSTRACT

The Toggenburg orbivirus (TOV), a recently discovered virus related to bluetongue virus (BTV), has been identified in goats in Switzerland, Italy and Germany. Isolation of TOV in vitro has not yet been achieved and the transmission mechanisms are still unknown. In the experimental infection of pregnant goats described here, TOV could not be detected in secretion/excretion samples or fetal blood. Material from the goat experiment was used as inoculum for propagating the virus in vitro. To enhance the infectivity of TOV several modified protocols, e.g. pretreatment of the virus with trypsin, polyethylene glycol-mediated infection and lipofection were applied. Isolation of TOV, attempts to infect Culicoides nubeculosus by feeding TOV-positive blood and intracerebral inoculation of newborn mice were unsuccessful. The results of these studies suggest that TOV requires specific but different factors than other BTVs for infection and replication outside of its natural caprine host.


Subject(s)
Goat Diseases/virology , Orbivirus/classification , Animals , Animals, Newborn , Cell Line , Ceratopogonidae/virology , Female , Goats , Insect Vectors , Mice , Pregnancy , Virus Replication , Virus Shedding
11.
Avian Dis ; 54(2): 875-84, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20608533

ABSTRACT

After the spread of H5N1 highly pathogenic avian influenza virus (AIV) from Asia into Russia, the Middle East, Europe, and Africa in 2005-06, the Swiss national AIV surveillance program was extended. One of the new focal points was Lake Constance, where sentinel duck stations and swim-in traps were established within the project Constanze in collaboration with Germany and Austria. More than 2000 samples from 41 species were collected in Switzerland between September 2006 and December 2008. Approximately 4% were AIV-positive by quantitative reverse transcriptase-PCR. Subsequent typing revealed 13 different AIV subtypes, of which H5N2 and H9N2 were the most prevalent. All H7 isolates and all but one H5 isolate were characterized as low pathogenic; however, a highly pathogenic H5N1 AIV was detected in a healthy pochard. This study demonstrates that a wide selection of different AIV subtypes can cocirculate among the waterfowl population in wild bird habitats.


Subject(s)
Birds , Influenza A virus/isolation & purification , Influenza in Birds/virology , Animals , Animals, Wild , Influenza A virus/classification , Influenza A virus/genetics , Influenza in Birds/epidemiology , Phylogeny , Sentinel Surveillance , Switzerland/epidemiology , Time Factors
12.
J Virol Methods ; 165(2): 325-9, 2010 May.
Article in English | MEDLINE | ID: mdl-20219538

ABSTRACT

Toggenburg Orbivirus (TOV) has been detected recently in healthy goats in Switzerland. The virus is related closely to bluetongue virus (BTV) and is considered tentatively as a 25th serotype of BTV. Upon detection of additional TOV-positive goats in Switzerland, Germany, and Italy, these TOV isolates were characterized genetically by partial sequencing of the viral genome segment 2 which encodes VP2, the major outer capsid protein of orbiviruses. A TOV-specific RT-qPCR was developed, targeting conserved areas within segment 2. Since TOV cannot be propagated up to now outside its natural host, a synthetic positive control for the RT-qPCR was constructed by cloning the entire coding region of segment 2 and subsequent in vitro transcription of RNA from both ends to obtain double-stranded RNA. The TOV-specific RT-qPCR was able to detect as few as 30 dsRNA copies and proved to be equally sensitive as a pan BTV assay that was shown previously to have a detection limit of 0.001 TCID(50).


Subject(s)
Genome, Viral/genetics , Goat Diseases/diagnosis , Orbivirus/isolation & purification , Reoviridae Infections/veterinary , Reverse Transcriptase Polymerase Chain Reaction/methods , Animals , Base Sequence , Goat Diseases/virology , Goats , Molecular Sequence Data , Orbivirus/classification , Orbivirus/genetics , Phylogeny , Reoviridae Infections/diagnosis , Reoviridae Infections/virology , Viral Structural Proteins/genetics
13.
PLoS One ; 5(2): e9097, 2010 Feb 05.
Article in English | MEDLINE | ID: mdl-20140098

ABSTRACT

Since the advent of highly pathogenic variants of avian influenza virus (HPAIV), the main focus of avian influenza research has been the characterization and detection of HPAIV hemagglutinin (HA) from H5 and H7 subtypes. However, due to the high mutation and reassortation rate of influenza viruses, in theory any influenza strain may acquire increased pathogenicity irrespective of its subtype. A comprehensive antigenic characterization of influenza viruses encompassing all 16 HA and 9 neuraminidase subtypes will provide information useful for the design of differential diagnostic tools, and possibly, vaccines. We have expressed recombinant HA proteins from 3 different influenza virus HA subtypes in the baculovirus system. These proteins were used to generate polyclonal rabbit antisera, which were subsequently employed in epitope scanning analysis using peptide libraries spanning the entire HA. Here, we report the identification and characterization of linear, HA subtype-specific as well as inter subtype-conserved epitopes along the HA proteins. Selected subtype-specific epitopes were shown to be suitable for the differentiation of anti-HA antibodies in an ELISA.


Subject(s)
Antigens, Viral/immunology , Hemagglutinin Glycoproteins, Influenza Virus/immunology , Influenza A virus/immunology , Amino Acid Sequence , Animals , Antibodies, Viral/blood , Birds , Blotting, Western , Enzyme-Linked Immunosorbent Assay , Epitope Mapping , Epitopes/genetics , Epitopes/immunology , Epitopes/metabolism , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Immune Sera/immunology , Influenza A virus/classification , Influenza A virus/genetics , Molecular Sequence Data , Rabbits , Recombinant Proteins/immunology , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid
14.
Vet Microbiol ; 144(3-4): 264-73, 2010 Aug 26.
Article in English | MEDLINE | ID: mdl-20153937

ABSTRACT

Twenty-seven sheep of the four most common Swiss breeds and the English breed Poll Dorset were experimentally infected with a northern European field strain of bluetongue virus serotype 8 (BTV-8). Animals of all breeds developed clinical signs, viremia and pathological lesions, demonstrating that BTV-8 is fully capable of replicating and inducing bluetongue disease (BT) in the investigated sheep. Necropsy performed between 10 and 16 days post-infectionem (d.p.i.) revealed BT-typical hemorrhages, effusions, edema, erosions and activation of lymphatic tissues. Hemorrhages on the base of the Arteria pulmonalis and the left Musculus papillaris subauricularis were frequently present. Histology confirmed the macroscopical findings. Using a score system, clinical manifestation and pathology were found to be significantly related. Furthermore, clinical signs and fever were shown to be indicative for the concurrent presence of high amounts of viral ribonucleic acid (RNA) in blood. Spleen, lung, lymph nodes and tonsils from all animals were analyzed regarding viral RNA loads and infectivity using real-time reverse transcriptase PCR (rRT-PCR) and virus isolation in cell culture, respectively. The highest amount of viral RNA was detected in spleen and lung and rRT-PCR revealed to be a more sensitive method for virus detection compared to virus isolation. A long-term follow-up was performed with three sheep showing that BTV-8 viral RNA in blood was present up to 133 d.p.i. and in certain tissues even on 151 d.p.i. No significant breed-related differences were observed concerning clinicopathological picture and viremia, and the Swiss sheep were as susceptible to BTV-8 infection as Poll Dorset sheep, demonstrating a remarkably high virulence of BTV-8 for indigenous sheep breeds.


Subject(s)
Bluetongue virus/classification , Bluetongue virus/genetics , Bluetongue/virology , Animals , Bluetongue/blood , Bluetongue/epidemiology , Bluetongue/pathology , Lung/virology , Lymphoid Tissue/virology , Myocardium/pathology , Pylorus/pathology , RNA, Viral/isolation & purification , Rumen/pathology , Serotyping , Sheep , Switzerland/epidemiology , Time Factors , Viremia
15.
J Virol ; 83(2): 817-29, 2009 Jan.
Article in English | MEDLINE | ID: mdl-18987150

ABSTRACT

Pestiviruses prevent alpha/beta interferon (IFN-alpha/beta) production by promoting proteasomal degradation of interferon regulatory factor 3 (IRF3) by means of the viral N(pro) nonstructural protein. N(pro) is also an autoprotease, and its amino-terminal coding sequence is involved in translation initiation. We previously showed with classical swine fever virus (CSFV) that deletion of the entire N(pro) gene resulted in attenuation in pigs. In order to elaborate on the role of the N(pro)-mediated IRF3 degradation in classical swine fever pathogenesis, we searched for minimal amino acid substitutions in N(pro) that would specifically abrogate this function. Our mutational analyses showed that degradation of IRF3 and autoprotease activity are two independent but structurally overlapping functions of N(pro). We describe two mutations in N(pro) that eliminate N(pro)-mediated IRF3 degradation without affecting the autoprotease activity. We also show that the conserved standard sequence at these particular positions is essential for N(pro) to interact with IRF3. Surprisingly, when these two mutations are introduced independently in the backbones of highly and moderately virulent CSFV, the resulting viruses are not attenuated, or are only partially attenuated, in 8- to 10-week-old pigs. This contrasts with the fact that these mutant viruses have lost the capacity to degrade IRF3 and to prevent IFN-alpha/beta induction in porcine cell lines and monocyte-derived dendritic cells. Taken together, these results demonstrate that contrary to previous assumptions and to the case for other viral systems, impairment of IRF3-dependent IFN-alpha/beta induction is not a prerequisite for CSFV virulence.


Subject(s)
Classical Swine Fever Virus/genetics , Classical Swine Fever Virus/pathogenicity , Endopeptidases/genetics , Endopeptidases/metabolism , Interferon Regulatory Factor-3/metabolism , Viral Proteins/genetics , Viral Proteins/metabolism , Virulence Factors/genetics , Virulence Factors/metabolism , Amino Acid Substitution/genetics , Animals , Cell Line , Mutagenesis, Site-Directed , Mutation, Missense , Swine , Virulence
16.
Vet Microbiol ; 134(3-4): 218-26, 2009 Mar 02.
Article in English | MEDLINE | ID: mdl-18818029

ABSTRACT

Bovine spongiform encephalopathy (BSE) rapid tests and routine BSE-testing laboratories underlie strict regulations for approval. Due to the lack of BSE-positive control samples, however, full assay validation at the level of individual test runs and continuous monitoring of test performance on-site is difficult. Most rapid tests use synthetic prion protein peptides, but it is not known to which extend they reflect the assay performance on field samples, and whether they are sufficient to indicate on-site assay quality problems. To address this question we compared the test scores of the provided kit peptide controls to those of standardized weak BSE-positive tissue samples in individual test runs as well as continuously over time by quality control charts in two widely used BSE rapid tests. Our results reveal only a weak correlation between the weak positive tissue control and the peptide control scores. We identified kit-lot related shifts in the assay performances that were not reflected by the peptide control scores. Vice versa, not all shifts indicated by the peptide control scores indeed reflected a shift in the assay performance. In conclusion these data highlight that the use of the kit peptide controls for continuous quality control purposes may result in unjustified rejection or acceptance of test runs. However, standardized weak positive tissue controls in combination with Shewhart-CUSUM control charts appear to be reliable in continuously monitoring assay performance on-site to identify undesired deviations.


Subject(s)
Encephalopathy, Bovine Spongiform/diagnosis , Immunohistochemistry/veterinary , Animals , Brain Stem/pathology , Cattle , Immunohistochemistry/methods , Prions/chemistry , Quality Control , Time
17.
Emerg Infect Dis ; 14(12): 1855-61, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19046507

ABSTRACT

A novel bluetongue virus (BTV) termed Toggenburg orbivirus (TOV) was detected in goats from Switzerland by using real-time reverse transcription-PCR. cDNA corresponding to the complete sequence of 7 of 10 double-stranded RNA segments of the viral genome was amplified by PCR and cloned into a plasmid vector. Five clones for each genome segment were sequenced to determine a consensus sequence. BLAST analysis and dendrogram construction showed that TOV is closely related to BTV, although some genome segments are distinct from the 24 known BTV serotypes. Maximal sequence identity to any BTV ranged from 63% (segment 2) to 79% (segments 7 and 10). Because the gene encoding outer capsid protein 2 (VP2), which determines the serotype of BTV, is placed within the BTV serogroup, we propose that TOV represents an unknown 25th serotype of BTV.


Subject(s)
Bluetongue virus/classification , Goats/virology , Animals , DNA, Complementary , Molecular Sequence Data , Orbivirus/classification , Orbivirus/genetics , Orbivirus/isolation & purification , Phylogeny , Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis, DNA , Serotyping , Switzerland
18.
Virus Genes ; 37(3): 407-13, 2008 Dec.
Article in English | MEDLINE | ID: mdl-18787938

ABSTRACT

In the winter 2005/2006 H5N1 highly pathogenic avian influenza virus (HPAIV) reached Western Europe and caused numerous deaths primarily in migratory water birds. Between February and April 2006 34 cases of H5N1 HPAIV-infected dead water fowl were identified in Switzerland, almost exclusively occurring in the Lake Constance area, a large overwintering area for migratory birds in the eastern part of the country. In total, 13 of these virus isolates were genetically characterized in the present study by full-length nucleotide sequence analysis of the hemagglutinin and neuraminidase-coding region. All viruses could be confirmed as HPAIV based on the amino acid sequence of their hemagglutinin cleavage site. Phylogenetic analysis revealed that all the virus isolates were highly similar to each other and to other H5N1 strains found in neighboring countries. All analyzed Swiss virus isolates belonged to the influenza virus subclade 2.2.1.


Subject(s)
Anseriformes/virology , Influenza A Virus, H5N1 Subtype/classification , Influenza A Virus, H5N1 Subtype/isolation & purification , Influenza in Birds/virology , Phylogeny , Animal Migration , Animals , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Influenza A Virus, H5N1 Subtype/genetics , Influenza in Birds/epidemiology , Molecular Sequence Data , Neuraminidase/genetics , Open Reading Frames , Switzerland/epidemiology
19.
J Gen Virol ; 88(Pt 8): 2247-2258, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17622629

ABSTRACT

The use of attenuated classical swine fever virus (CSFV) strains as live vaccines is no longer allowed for the control of classical swine fever in Europe, due to the inability to differentiate between infected and vaccinated animals (Differentiating Infected from Vaccinated Animals; DIVA), except as emergency vaccines or as bait vaccines for wild boars. Thus, the establishment of a DIVA vaccine(s) is of pivotal importance for the control of this infectious disease. In this study, recombinant versions of the live-attenuated vaccine strain CSFV Riems were generated by replacing parts of the E2 gene with the corresponding sequence of border disease virus strain Gifhorn. Three cDNA clones were constructed: pRiems-ABC-Gif, pRiems-A-Gif and pRiems-BC-Gif. Infectious particles were obtained from clones pRiems-ABC-Gif and pRiems-BC-Gif only, whereas transfected RNA from clone pRiems-A-Gif behaved like a replicon. Based on its ability to be differentiated in vitro from wild-type CSFV by mAbs, vRiems-ABC-Gif was assessed for immunogenicity and protection against challenge infection in pigs. Before challenge, no CSFV-specific anti-E2 antibodies could be detected with commercial E2-blocking ELISAs in vRiems-ABC-Gif-vaccinated animals, whereas vRiems-vaccinated pigs developed high titres of anti-E2 antibodies, confirming the marker properties of this vaccine candidate. After oral vaccination, only partial protection against challenge infection was observed in the vRiems-ABC-Gif vaccinees, whereas all intramuscularly vaccinated animals and all vRiems-vaccinated animals were fully protected. These experiments suggest that the strategy of exchanging specific antigenic epitopes among pestiviruses is a promising tool for the development of new CSFV marker vaccines.


Subject(s)
Border disease virus/immunology , Classical Swine Fever Virus/genetics , Classical Swine Fever Virus/immunology , Classical Swine Fever/prevention & control , Genes, Viral/genetics , Glycoproteins/biosynthesis , Reassortant Viruses/immunology , Vaccination , Viral Structural Proteins/biosynthesis , Viral Vaccines/administration & dosage , Administration, Oral , Animals , Antibodies, Viral/blood , Antibody Specificity , Border disease virus/chemistry , Border disease virus/metabolism , Cell Line , Classical Swine Fever/immunology , Classical Swine Fever Virus/metabolism , Drug Evaluation, Preclinical , Enzyme-Linked Immunosorbent Assay , Epitopes/genetics , Epitopes/immunology , Glycoproteins/genetics , Glycoproteins/immunology , Injections, Intramuscular , Reassortant Viruses/metabolism , Swine , Vaccines, Attenuated/administration & dosage , Vaccines, Attenuated/genetics , Viral Structural Proteins/genetics , Viral Structural Proteins/immunology
20.
Virology ; 365(2): 376-89, 2007 Sep 01.
Article in English | MEDLINE | ID: mdl-17482232

ABSTRACT

The nonstructural protein NS2-3 of pestiviruses undergoes tightly regulated processing. For bovine viral diarrhea virus it was shown that uncleaved NS2-3 is required for infectious particle formation while cleaved NS3 is essential for genome replication. To further investigate the functions of NS2-3 and NS4A in the pestivirus life cycle, we established T7 RNA polymerase-dependent trans-complementation for p7-NS2-3-4A of classical swine fever virus (CSFV). Expression of NS2-3 and NS4A in trans restored the production of infectious particles from genomes lacking NS2-3 expression. Co-expression of cleaved NS4A was essential. None of the enzymatic activities harbored by NS2-3 were required for infectious particle formation. Importantly, expression of uncleavable NS2-3 together with NS4A rescued infectious particles from a genome lacking NS2, demonstrating that cleaved NS2 per se has no additional essential function. These data indicate that NS2-3 and NS3, each in association with NS4A, have independent functions in the CSFV life cycle.


Subject(s)
Classical Swine Fever Virus/physiology , Viral Nonstructural Proteins/physiology , Virus Replication/physiology , Animals , Cell Line , Classical Swine Fever Virus/genetics , Genetic Complementation Test , Immunohistochemistry , Models, Biological , Swine , Viral Nonstructural Proteins/analysis , Viral Nonstructural Proteins/genetics , Virion/chemistry , Virus Replication/genetics
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