Energy balance of individual cows can be estimated in real-time on farm using frequent liveweight measures even in the absence of body condition score.

Existing methods for estimating individual dairy cow energy balance typically either need information on feed intake, that is, the traditional input-output method, or frequent measurements of BW and body condition score (BCS), that is, the body reserve changes method (EB(body)). The EB(body) method holds the advantage of not requiring measurements of feed intake, which are difficult to obtain in practice. The present study aimed first to investigate whether the EB(body) method can be simplified by basing EB(body) on BW measurements alone, that is, removing the need for BCS measurements, and second to adapt the EB(body) method for real-time use, thus turning it into a true on-farm tool. Data came from 77 cows (primiparous or multiparous, Danish Holstein, Red or Jersey) that took part in an experiment subjecting them to a planned change in concentrate intake during milking. BW was measured automatically during each milking and real-time smoothed using asymmetric double-exponential weighting and corrected for the weight of milk produced, gutfill and the growing conceptus. BCS assessed visually with 2-week intervals was also smoothed. EB(body) was calculated from BW changes only, and in conjunction with BCS changes. A comparison of the increase in empty body weight (EBW) estimated from EB(body) with EBW measured over the first 240 days in milk (DIM) for the mature cows showed that EB(body) was robust to changes in the BCS coefficients, allowing functions for standard body protein change relative to DIM to be developed for breeds and parities. These standard body protein change functions allow EB(body) to be estimated from frequent BW measurements alone, that is, in the absence of BCS measurements. Differences in EB(body) levels before and after changes in concentrate intake were calculated to test the real-time functionality of the EB(body) method. Results showed that significant EB(body) increases could be detected 10 days after a 0.2 kg/day increase in concentrate intake. In conclusion, a real-time method for deriving EB(body) from frequent BW measures either alone or in conjunction with BCS measures has been developed. This extends the applicability of the EB(body) method, because real-time measures can be used for decision support and early intervention.

Differential smoothing of time-series measurements to identify disturbances in performance and quantify animal response characteristics: An example using milk yield profiles in dairy cows.

Recent advances in on-farm technology now provide us with multiple time-series of reliably measured indicators of animal performance and status at the level of the individual. This paper presents a smoothing approach for extracting biologically meaningful features from such time series using bovine milk yield data as an example. The main goal of this study was to illustrate how the method can be used to detect production deviations, extract quantifiable features of the deviation profiles, and thus provide means to examine hypotheses concerning the nature of the deviations. The effectiveness of the method was assessed with complete lactation curves from 47 Holstein cows. Within their lactations, the cows were each subjected to 1 nutritional challenge for a period of 4 d (their standard diet: a maize silage-based total mixed ration was diluted with 60% wheat straw), which provoked a decline in the milk yield in all cows. The challenge was imposed between the same calendar days for all cows. Thus, the cows were at different stages of lactation: early (n = 14), mid (n = 15), and late (n = 18). Each milk-yield curve was decomposed into components that capture the short-term deviations of the cow such as the response to the nutritional challenge and describe the phenotypic potential yield function of that cow throughout its lactation. The difference between the 2 components gives a measure of the milk loss. In all, 480 deviations were detected from the complete lactations of 47 cows. The milk loss provoked by the feeding challenge (n = 47) was significantly related to the milk yield immediately before the challenge (r = 0.86, P < 0.01). The correlation between the rate of recovery and milk loss was (r = 0.94, P < 0.01). Further, there was no significant slope (P > 0.1) to the relationship between the ratio (rate of recovery/milk loss) and days from calving, indicating that the force of recovery was unaffected by stage of lactation. These results suggest that differential smoothing can be a useful tool for quantifying biological disturbances in animal performance and for extracting features that relate to the potential and robustness of an animal.

Quantifying degree of mastitis from common trends in a panel of indicators for mastitis in dairy cows.

This paper has 2 objectives. First, it argues that it is beneficial to regard degree of infection with respect to mastitis as a latent quantity varying continuously from 0 (truly healthy) to 1 (full-blown clinical mastitis). This quantity is denoted as degree of infection (DOI). The DOI is based on extracting common characteristics from a panel of indicators measured repeatedly over time. The indicators used in this paper are electrical conductivity (EC), somatic cell count (SCC), and the immune response related enzyme lactate dehydrogenase (LDH). Second, this paper presents a statistical model for such data and a corresponding method for estimating the DOI from a panel of indicators. An empirical proof of concept is provided. Using DOI, there was a significant difference between the DOI of mastitic and healthy control cows beginning 5 d before the mastitic cows were treated for mastitis.

Improved detection of reproductive status in dairy cows using milk progesterone measurements.

This study tested a model for predicting reproductive status from in-line milk progesterone ;measurements. The model is that of Friggens and Chagunda [Theriogenology 64 (2005) 155]. Milk progesterone measurements (n = 55 036) representing 578 lactations from 380 cows were used to test the model. Two types of known oestrus were identified: (1) confirmed oestrus (at which insemination resulted in a confirmed pregnancy, n = 121) and (2) ratified oestrus (where the shape of the progesterone profile matched that of the average progesterone profile of a confirmed oestrus, n = 679). The model detected 99.2% of the confirmed oestruses. This included a number of cases (n = 16) where the smoothed progesterone did not decrease below 4 ng/ml. These cows had significantly greater concentrations of progesterone, both minimum and average, suggesting that between cow variation exists in the absolute level of the progesterone profile. Using ratified oestruses, model sensitivity was 93.3% and specificity was 93.7% for detection of oestrus. Examination of false positives showed that they were largely associated with low concentrations of progesterone, fluctuating around the 4 ng/ml threshold. The distribution of time from insemination until the model detected pregnancy failure had a median of 22 days post-insemination. In this test, the model was run using limited inputs, the potential benefits of including additional non-progesterone information were not evaluated. Despite this, the model performed at least as well as other oestrus detection systems.

Estimating degree of mastitis from time-series measurements in milk: a test of a model based on lactate dehydrogenase measurements.

The aim of this study was to test a model for mastitis detection using a logic that allows examination of time-related changes and a progressive scale of mastitis state (i.e., not using specificity/sensitivity). The model produces a mastitis risk (MR) for individual cows on a scale from 0 (completely healthy) to 1 (full-blown mastitis). The main model input was lactate dehydrogenase (LDH; mumol/min per L) x milk yield. Test data containing 253 mastitis cases were used. Proportional samples were collected from each cow at each milking and analyzed for LDH and somatic cell count (SCC). The basis for the health definitions was veterinary treatment records. A refinement of the basic health definitions was made using systematic positive deviations in log(SCC) to indicate untreated infections. Two subsets of cows were identified: mastitic cows and cows completely free of mastitis (healthy controls). The time-profiles of these 2 groups in a 60-d window relative to day of veterinary treatment were examined. Model reliability throughout all stages of lactation and degrees of infection was examined using SCC as a continuous measure of degree of mastitis. The time-profile for the health controls was flat throughout the 60-d window with a median MR of 0.02. In contrast, the profile of the mastitic cows increased above the control cows' baseline from about -6 d, rising to a MR value of 0.20 at d 0, and declining to the control level after treatment. There were significant differences between mastitic and healthy cows from -4 to +2 d relative to veterinary treatment. When cases were time-aligned to peak of infection, rather than veterinary treatment, there was a much sharper peak to the time-profile of mastitic cows. The median MR at peak was 0.62 and the mean was 0.80. Using these data, the MR value of 0.62 had a <1% likelihood of actually coming from a healthy control. Testing against SCC, on the whole data set, showed that only 2.1% of all MR values had an error >0.7. These estimates of model reliability are comparable with the greatest values reported in the literature and, additionally, the model was able to detect significant differences between mastitic and healthy cows 4 d before treatment. It was also found that specificity/sensitivity calculations are inappropriate for evaluating time-related changes and a progressive scale of predicted mastitis state.

Lectin histochemical characterisation of the porcine small intestine around weaning.

The present study was undertaken to characterise the carbohydrate profile of the porcine small intestine using lectin histochemistry during the period from 3 days prior to weaning to 9 days post-weaning. A total of 56 piglets weaned at 4 weeks of age were included in the experiment. The most prominent changes in the glycosylation pattern were observed in the goblet cells. The highest lectin reactivity of the goblet cells in the crypts was observed 7 days post-weaning which suggests that the protective effect of the mucus layer against pathogenic bacteria is increasing during the postweaning period. The staining pattern of the apical membrane remained unchanged during the experimental period. This indicates that the glycosylation process in the goblet cells is rapidly inducible whereas changes in the glycosylation pattern of the apical membrane requires more time. The glycosylation pattern of both goblet cells and apical membrane differed between the positions of the small intestine. As glycoconjugates can act as attachment sites for microorganisms, these differences in the distribution of sugar residues may be one explanation for the site-specificity of certain pathogens.

Feed physical form and formic acid addition to the feed affect the gastrointestinal ecology and growth performance of growing pigs.

The effect of feeding a coarsely ground meal (COARSE) and a finely ground pelleted diet with 1.8% (as-fed basis) added formic acid (ACID) was compared with feeding a standard finely ground pelleted diet (STD) on the gastrointestinal ecology of growing pigs at different intervals after feeding. One hundred five castrated male growing-finishing pigs (initial BW 27 kg) were used. At a BW of 63 kg, 60 pigs were killed 0.5, 2.5, 4.5, 6.5, and 8.5 h after feeding, and samples from the gastrointestinal tract (GIT) were obtained. The remaining 45 pigs were kept on the experimental diets to a BW of 99 kg. Feeding the three diets resulted in a similar pattern of gastric pH with time, (i.e., highest pH values 0.5 h after feeding and decreasing values at the following sampling times, to reach a value of 2.12 at 8.5 h after feeding). The pH of the gastric digesta of pigs fed the ACID diet was below 4 at all sampling times, whereas the digesta from the other two dietary groups had values above pH 4 at the first sampling times. Feeding the ACID diet decreased the counts of total anaerobes in the proximal GIT (P < or = 0.007), and of lactic acid bacteria (P < or = 0.001), enterobacteria (P < or = 0.02), and yeasts (P < or = 0.01) along the GIT compared with feeding the other two diets. Feeding the COARSE diet stimulated the growth of total anaerobes and lactic acid bacteria in the stomach and distal small intestine increased the microbial diversity mainly in the stomach (P = 0.001), compared with feeding the other two diets (P < or = 0.09), and decreased the number of enterobacteria in the cecum compared with the STD diet (P = 0.03), with the same tendency in the mid-colon (P = 0.07). The concentration of lactic acid in the stomach was highest in the pigs fed the COARSE diet compared with the other two groups (P < 0.05). The concentration of formic acid was highest in the stomach and all segments of the small intestine of the pigs fed the ACID diet compared with those fed the STD and COARSE diets (P < 0.05). The results from this study suggest that feeding a coarsely ground diet and a finely ground diet with added formic acid affect the gastrointestinal ecology of pigs mainly by changing the environment in the proximal GIT. The presence of organic acids in the proximal GIT is a crucial factor contributing to the decrease in the number of enterobacteria along the GIT. The time after feeding at which samples are taken to measure characteristics describing the gastrointestinal ecology affects the results from the stomach and small intestine.

Small intestinal morphology and activity of intestinal peptidases in piglets around weaning.

The effect of weaning on small intestinal morphology and the activities of three intestinal peptidases was investigated from 3 days prior to weaning to 9 days post-weaning in 64 piglets. Villous height, crypt depth and mitotic counts were determined at three positions along the small intestine. The activities of aminopeptidase N, dipeptidylpeptidase IV and gamma-glutamyl transpeptidase were measured at five positions along the small intestine. The villous height was maximal on the day of weaning. Post-weaning, the villi shortened at the proximal positions of the small intestine and the minimal length was observed on day 3 after weaning. Villous height did not decrease distally in the small intestine. Increased crypt depth was observed from 3-7 days post-weaning at all positions examined. Mitotic counts showed increased proliferative activity in the crypts from the third day post-weaning. Weaning influenced the activity of aminopeptidase N and dipeptidylpeptidase IV. The activities declined until day 3 post-weaning. After that, the activities increased and they had reached pre-weaning values by day 9 post-weaning. Weaning had only minor effect on the activity of gamma-glutamyl transpeptidase. In summary, weaning induced changes in small intestinal morphology and enzyme activity. The changes were maximal on day 3 post-weaning and during the following days, a gradual recovery of the small intestine was observed.

Differences in chicken major histocompatibility complex (MHC) class Ialpha gene expression between Marek's disease-resistant and -susceptible MHC haplotypes.

The expression of chicken major histocompatibility complex (MHC) class Ialpha genes was investigated in spleen cells from a panel of chickens with well-defined MHC haplotypes, and two class Ialpha transcripts of 1.9 and 1.5 kb were detected in various amounts. In BW1, B130 and B21, the two transcripts were almost equally expressed. In B2, B6, B12 and B19, the ratio between the two transcripts was 4 : 1, with the 1.9 kb transcript having the strongest expression. In B14 and B15, the 1.5 kb transcript was undetectable and the 1.9 kb transcript appeared to be exclusively expressed. Thus, haplotypes considered to have an MHC-determined resistance to Marek's disease (MD) had the highest relative amount of the 1.5 kb transcript, whereas haplotypes considered to be MD-susceptible had the lowest. In order to address a possible correlation between MHC-Ialpha transcriptional patterns and MD resistance, a larger animal material experimentally infected with MD virus (MDV) was examined. The expression of MHC class Ialpha genes was investigated in spleens as well as in other organs, 9 weeks post-infection (p.i.), from animals of the two MD-resistant haplotypes B21 and BW1 as well as from the MD-susceptible haplotype B19. In the spleen cells of infected animals, the relative amount of the 1.5 kb transcript in the haplotypes BW1 and B21 was shown to be significantly higher than that in B19. Interestingly, in infected BW1 and B21 animals, the relative amount of the 1.5 kb transcript was also significantly higher than that in healthy MHC-matched controls. In B19, no differences were detected between uninfected and infected animals. Furthermore, it was shown in BW1 and B21 that the two classical MHC-Ialpha genes located in the MHC region were both able to produce both mRNA transcripts. Hybridization experiments, using specific probes upstream and downstream of the polyadenylation signals in the 3' end of the MHC-Ialpha genes, demonstrated that alternate use of these signals is probably involved in the production of the two mRNA transcripts.

In vitro fermentation pattern of D-tagatose is affected by adaptation of the microbiota from the gastrointestinal tract of pigs.

Knowledge of the fermentation pattern of D-tagatose is important for the assessment of energy value and compliance of D-tagatose. In vitro fermentation experiments with pig intestinal contents and bacteria harvested from the gastrointestinal tract of pigs were used to investigate the degradation of D-tagatose and the formation of fermentation products. Two groups of eight pigs were fed either a control diet containing 150 g/kg sucrose or a diet which had 100 g/kg of the sucrose replaced by D-tagatose. After 18 d the pigs were killed and the gastrointestinal contents collected for in vitro studies. No microbial fermentation of D-tagatose occurred in the stomach or in the small intestine, whereas the sugar was fermented in the cecum and colon. Formate, acetate, propionate, butyrate, valerate, caproate and some heptanoate were produced by the microbial fermentation of D-tagatose by gut microbiota. Hydrogen and methane were also produced. The population of D-tagatose-degrading bacteria in fecal samples and the capacity of bacteria from the hindgut to degrade D-tagatose were higher in the pigs adapted to D-tagatose compared with unadapted pigs. In unadapted pigs, the major fermentation product from D-tagatose was acetic acid. Much more butyric and valeric acids were produced from D-tagatose by bacterial slurries of tagatose-adapted pigs compared with unadapted pigs; this was especially the case for samples from the colon. We conclude that D-tagatose is not fermented in the upper gastrointestinal tract, and the ability of the large intestinal microbiota to ferment D-tagatose is dependent on adaptation.

Influence of dietary rapeseed oil, vitamin E, and copper on the performance and the antioxidative and oxidative status of pigs.

We investigated the effects of dietary copper and vitamin E in diets containing 6% rapeseed oil on the performance and the antioxidative and oxidative status of growing pigs. The 10 dietary treatments consisted of a basal diet (9 mg of vitamin E/kg feed, 15 mg of Cu/kg feed), the basal diet + 6% rapeseed oil (Diet 1; 18 mg of vitamin E/kg feed, 15 mg of Cu/kg feed), and Diet 1 plus supplements of vitamin E (0, 100, and 200 mg of dl-alpha-tocopheryl acetate/kg feed) and copper (0, 35, and 175 mg of Cu/ kg feed) in a 3 x 3 factorial arrangement of treatments. Eight or nine pigs were given ad libitum access to each diet from 25 to 100 kg of live weight. The inclusion of rapeseed oil tended (P < .10) to improve ADG and feed utilization. Compared with the addition of 35 mg of Cu/kg, the addition of 175 mg/kg improved growth rate and increased feed intake early in the experiment, but, over the total experiment, neither 35 nor 175 mg of Cu/kg affected performance. Compared with the addition of 100 mg of vitamin E/kg or no addition, the addition of 200 mg/kg reduced ADG over the total experiment (P = .05). The antioxidative and oxidative status of the pigs was evaluated in terms of blood and liver concentrations of antioxidants (alpha-tocopherol, ascorbic acid, vitamin A, superoxide dismutase, glutathione peroxidase), prooxidants (Cu), concentrations of lipids (triglycerides and cholesterol), fatty acid composition, thiobarbituric acid-reactive substances (TBARS), and clinical chemical (creatine kinase and glutamate-oxaloacetate-transaminase) and hematological variables that indicate the level of oxidative stress. There were no vitamin E deficiency signs or increased oxidative stress in pigs fed low dietary vitamin E levels, and no prooxidative effect of Cu was found. Increasing dietary levels of vitamin E increased the concentration of alpha-tocopherol in plasma and liver. Supplementation with Cu increased liver concentrations of Cu and alphatocopherol. The progression in liver TBARS was reduced by the addition of vitamin E and Cu. The addition of rapeseed oil changed the fatty acid composition of liver, increased alpha-tocopherol concentration in plasma and Cu concentration in liver, and reduced the rate of lipid oxidation in liver. In conclusion, even though the effects were minor, vitamin E, Cu, and rapeseed oil improved the antioxidative status of the live pigs.

Intestinal degradation in pigs of rye dietary fibre with different structural characteristics.

In order to investigate the effects of dietary fibre (DF) characteristics on carbohydrate degradation and the metabolism in the large intestine, pigs were fed on four rye-bread diets (based on whole rye, pericarp/testa, aleurone or endosperm) with differences in characteristics and amount of DF. The degradability of DF in the large intestine varied greatly between diets. The pericarp/testa DF was hardly degraded in the large intestine, whereas endosperm DF was extensively and rapidly degraded in the caecum. Caecal degradation of aleurone DF was also limited, leaving more material to be degraded in the colon. The undegradable pericarp/testa DF was characterized by high contents of lignin, cellulose, ferulic acids and highly substituted arabinoxylans (the major DF component in rye). Ingestion of this diet resulted in increased faecal bulk and reduced transit time, but with low colonic pH and the lowest concentrations of shortchain fatty acids (SCFA). The aleurone diet, on the other hand, led to a fermentation pattern which may be considered more optimal, with lower colonic pH and higher concentrations of SCFA, in particular butyric acid. Despite the large differences in carbohydrate fermentation only minor significant effects on the presence of protein degradation products and on histological measurements (height and diameter of colonic crypts and thickness of the muscularis external) were observed.