ABSTRACT
The accumulation of sequenced Francisella strains has made it increasingly apparent that the 16S rRNA gene alone is not enough to stratify the Francisella genus into precise and clinically useful classifications. Continued whole-genome sequencing of isolates will provide a larger base of knowledge for targeted approaches with broad applicability. Additionally, examination of genomic information on a case-by-case basis will help resolve outstanding questions regarding strain stratification. We report the complete genome sequence of a clinical isolate, designated here as F. novicida-like strain TCH2015, acquired from the lymph node of a 6-year-old male. Two features were atypical for F. novicida: exhibition of functional oxidase activity and additional gene content, including proposed virulence determinants. These differences, which could potentially impact virulence and clinical diagnosis, emphasize the need for more comprehensive methods to profile Francisella isolates. This study highlights the value of whole-genome sequencing, which will lead to a more robust database of environmental and clinical genomes and inform strategies to improve detection and classification of Francisella strains.
Subject(s)
Francisella/classification , Francisella/isolation & purification , Genotype , Lymph Nodes/microbiology , Tularemia/diagnosis , Child , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Francisella/genetics , Genes, Bacterial , Genetic Variation , Genome, Bacterial , Humans , Male , Oxidoreductases/genetics , Sequence Analysis, DNA , Virulence Factors/genetics , Whole Genome SequencingABSTRACT
Turicibacterbacteria are commonly detected in the gastrointestinal tracts and feces of humans and animals, but their phylogeny, ecological role, and pathogenic potential remain unclear. We present here the first complete genome sequence ofTuricibactersp. strain H121, which was isolated from the feces of a mouse line contaminated following germ-free derivation.
ABSTRACT
The bacterial pathogen Francisella tularensis was recently renewed as a tier-one select agent. F. tularensis subsp. tularensis (type A) and holarctica (type B) are of clinical relevance. Here, we report the complete genome of a virulent F. tularensis type B strain and describe its usefulness in comparative genomics.
ABSTRACT
The phylogenetic position of the trichomonad, Histomonas meleagridis was determined by analysis of small subunit rRNAs. Molecular trees including all identified parabasalid sequences available in data bases were inferred by distance, parsimony, and likelihood methods. All reveal a close relationship between H. meleagridis, and Dientamoeba fragilis. Moreover, small subunit rRNAs of both amoeboid species have a reduced G + C content and increased chain length relative to other parabasalids. Finally, the rRNA genes from H. meleagridis and D. fragilis share a recent common ancestor with Tritrichomonasfoetus, which exhibits a more developed cytoskeleton. This indicates that Histomonas and Dientamoeba secondarily lost most of the typical trichomonad cytoskeletal structures and hence, do not represent primitive morphologies. A global phylogeny of parabasalids revealed significant discrepancies with morphology-based classifications, such as the polyphyly of most of the parabasalid families and classes included in our study.
Subject(s)
Trichomonadida/classification , Animals , Cloning, Molecular , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Evolution, Molecular , Molecular Sequence Data , Phylogeny , Trichomonadida/genetics , Turkeys/parasitologyABSTRACT
The Giardia genome project database provides an online resource for Giardia lamblia (WB strain, clone C6) genome sequence information. The database includes edited single-pass reads, the results of BLASTX searches, and details of progress towards sequencing the entire 12 million-bp Giardia genome. Pre-sorted BLASTX results can be retrieved based on keyword searches and BLAST searches of the high throughput Giardia data can be initiated from the web site or through NCBI. Descriptions of the genomic DNA libraries, project protocols and summary statistics are also available. Although the Giardia genome project is ongoing, new sequences are made available on a bi-monthly basis to ensure that researchers have access to information that may assist them in the search for genes and their biological function. The current URL of the Giardia genome project database is www.mbl.edu/Giardia.
Subject(s)
Databases, Factual , Genome, Protozoan , Giardia/genetics , AnimalsABSTRACT
This article reports the results of a study of computer anxiety among a large (n = 638), diverse sample of nurses (undergraduate and graduate students, educators, staff nurses, and nurse managers). Data were collected using the Oetting Computer Anxiety Scale (COMPAS). Although there was significant variability within and between groups, most nurses exhibited only "mild" computer anxiety and expected to be using computers within three years. Correlates of computer anxiety are also discussed.
