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2.
Blood ; 98(13): 3817-22, 2001 Dec 15.
Article in English | MEDLINE | ID: mdl-11739191

ABSTRACT

Studies have previously described the feasibility of receptor-mediated protein transfer in a cell culture model of Fanconi anemia (FA) group C. This study explores the versatility of this approach by using an antibody single-chain fusion protein to correct the phenotypic defect in FA group F cells. A 68.5-kd chimeric protein (His-M195FANCF) was expressed, consisting of a His tag, a single-chain antibody to the myeloid antigen CD33, and the FANCF protein, as well as a 43-kd His-FANCF fusion protein lacking the antibody motif, in Escherichia coli. The nickel-agarose-purified His-M195FANCF protein bound specifically to the surface of HeLa cells transfected with CD33 and internalized through vesicular structures. The fusion protein, but not CD33, sorted to the nucleus, consistent with the known nuclear localization of FANCF. No similar binding or internalization was observed with His-FANCF. Pretreatment of the transfected cells with chloroquine abolished nuclear accumulation, but there was little change with brefeldin A, indicating a minimal if any role for the Golgi apparatus in mediating transport from endosomes to the cytosol and the nucleus. The intracellular half-life of His-M195FANCF was approximately 160 minutes. Treatment of CD33-transfected FA group F lymphoblastoid cells with 0.1 mg/mL His-M195FANCF conferred resistance to mitomycin C. No similar protection was noted in CD33(-) parental cells or CD33(+) FA cells belonging to groups A and C. These results demonstrate that antibody-directed, receptor-mediated protein transfer is a versatile method for the delivery of biologically active proteins into hematopoietic cells.


Subject(s)
Antigens, CD/physiology , Antigens, Differentiation, Myelomonocytic/physiology , Fanconi Anemia , Hematopoietic Stem Cells/metabolism , Lymphocytes/metabolism , RNA-Binding Proteins/genetics , Transfection , Antigens, CD/genetics , Antigens, Differentiation, Myelomonocytic/genetics , Brefeldin A/pharmacology , Cell Membrane/metabolism , Cell Nucleus/metabolism , Chloroquine/pharmacology , Cross-Linking Reagents/pharmacology , Endosomes/metabolism , Escherichia coli/genetics , Fanconi Anemia Complementation Group F Protein , Gene Expression , Gene Targeting , Golgi Apparatus/drug effects , Golgi Apparatus/physiology , Half-Life , HeLa Cells/metabolism , HeLa Cells/ultrastructure , Histidine/genetics , Humans , RNA-Binding Proteins/physiology , Recombinant Fusion Proteins/metabolism , Sialic Acid Binding Ig-like Lectin 3
3.
Infect Immun ; 69(12): 7205-12, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11705889

ABSTRACT

Escherichia coli type IIa heat-labile enterotoxin (LTIIa) binds in vitro with highest affinity to ganglioside GD1b. It also binds in vitro with lower affinity to several other oligosialogangliosides and to ganglioside GM1, the functional receptor for cholera toxin (CT). In the present study, we characterized receptor-mediated signal transduction by LTIIa in the cultured T84 cell model of human intestinal epithelium. Wild-type LTIIa bound tightly to the apical surface of polarized T84 cell monolayers and elicited a Cl(-) secretory response. LTIIa activity, unlike CT activity, was not blocked by the B subunit of CT. Furthermore, an LTIIa variant with a T14I substitution in its B subunit, which binds in vitro to ganglioside GM1 but not to ganglioside GD1b, was unable to bind to intact T84 cells and did not elicit a Cl(-) secretory response. These findings show that ganglioside GM1 on T84 cells is not a functional receptor for LTIIa. The LTIIa receptor on T84 cells was inactivated by treatment with neuraminidase. Furthermore, LTIIa binding was blocked by tetanus toxin C fragment, which binds to gangliosides GD1b and GT1b. These findings support the hypothesis that ganglioside GD1b, or possibly a glycoconjugate with a GD1b-like oligosaccharide, is the functional receptor for LTIIa on T84 cells. The LTIIa-receptor complexes from T84 cells were associated with detergent-insoluble membrane microdomains (lipid rafts), extending the correlation between toxin binding to lipid rafts and toxin function that was previously established for CT. However, the extent of association with lipid rafts and the magnitude of the Cl(-) secretory response in T84 cells were less for LTIIa than for CT. These properties of LTIIa and the previous finding that enterotoxin LTIIb binds to T84 cells but does not associate with lipid rafts or elicit a Cl(-) secretory response may explain the low pathogenicity for humans of type II enterotoxin-producing isolates of E. coli.


Subject(s)
Bacterial Toxins/metabolism , Cell Polarity/physiology , Enterotoxins/metabolism , Escherichia coli Proteins , Gangliosides/metabolism , Intestinal Mucosa/metabolism , Receptors, Cell Surface/metabolism , Cell Line , Chlorides/metabolism , Escherichia coli/pathogenicity , G(M1) Ganglioside/metabolism , Gangliosides/antagonists & inhibitors , Humans , Intestinal Mucosa/cytology , Neuraminidase/pharmacology , Receptors, Cell Surface/antagonists & inhibitors , Signal Transduction , Tetanus Toxin/pharmacology
4.
J Bacteriol ; 183(13): 4024-32, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11395467

ABSTRACT

Cholera toxin (CT) is the prototype for the Vibrio cholerae-Escherichia coli family of heat-labile enterotoxins having an AB5 structure. By substituting amino acids in the enzymatic A subunit that are highly conserved in all members of this family, we constructed 23 variants of CT that exhibited decreased or undetectable toxicity and we characterized their biological and biochemical properties. Many variants exhibited previously undescribed temperature-sensitive assembly of holotoxin and/or increased sensitivity to proteolysis, which in all cases correlated with exposure of epitopes of CT-A that are normally hidden in native CT holotoxin. Substitutions within and deletion of the entire active-site-occluding loop demonstrated a prominent role for His-44 and this loop in the structure and activity of CT. Several novel variants with wild-type assembly and stability showed significantly decreased toxicity and enzymatic activity (e.g., variants at positions R11, I16, R25, E29, and S68+V72). In most variants the reduction in toxicity was proportional to the decrease in enzymatic activity. For substitutions or insertions at E29 and Y30 the decrease in toxicity was 10- and 5-fold more than the reduction in enzymatic activity, but for variants with R25G, E110D, or E112D substitutions the decrease in enzymatic activity was 12- to 50-fold more than the reduction in toxicity. These variants may be useful as tools for additional studies on the cell biology of toxin action and/or as attenuated toxins for adjuvant or vaccine use.


Subject(s)
Cholera Toxin/genetics , Cholera Toxin/toxicity , Escherichia coli Proteins , ADP-Ribosylation Factors/genetics , ADP-Ribosylation Factors/immunology , ADP-Ribosylation Factors/toxicity , Amino Acid Sequence , Bacterial Toxins/genetics , Bacterial Toxins/toxicity , Binding Sites , Cholera Toxin/immunology , Conserved Sequence , Enterotoxins/genetics , Enterotoxins/toxicity , Enzyme Stability , Epitopes , Genetic Variation , Models, Molecular , Mutagenesis, Site-Directed , Protein Conformation
5.
Acta Crystallogr D Biol Crystallogr ; 57(Pt 5): 619-27, 2001 May.
Article in English | MEDLINE | ID: mdl-11320302

ABSTRACT

The diphtheria toxin repressor (DtxR) from Corynebacterium diphtheriae regulates the expression of the gene on corynebacteriophages that encodes diphtheria toxin (DT). Other genes regulated by DtxR include those that encode proteins involved in siderophore-mediated iron uptake. DtxR requires activation by divalent metals and holo-DtxR is a dimeric regulator with two distinct metal-binding sites per three-domain monomer. At site 1, three side chains and a sulfate or phosphate anion are involved in metal coordination. In the DtxR-DNA complex this anion is replaced by the side chain of Glu170 provided by the third domain of the repressor. At site 2 the metal ion is coordinated exclusively by constituents of the polypeptide chain. In this paper, five crystal structures of three DtxR variants focusing on residues Glu20, Arg80 and Cys102 are reported. The resolution of these structures ranges from 2.3 to 2.8 A. The side chain of Glu20 provided by the DNA-binding domain forms a salt bridge to Arg80, which in turn interacts with the anion. Replacing either of the salt-bridge partners with an alanine reduces repressor activity substantially and it has been inferred that the salt bridge could possibly control the wedge angle between the DNA-binding domain and the dimerization domain, thereby modulating repressor activity. Cys102 is a key residue of metal site 2 and its substitution into a serine abolishes repressor activity. The crystal structures of Zn-Glu20Ala-DtxR, Zn-Arg80Ala-DtxR, Cd-Cys102Ser-DtxR and apo-Cys102Ser-DtxR in two related space groups reveal that none of these substitutions leads to dramatic rearrangements of the DtxR fold. However, the five crystal structures presented here show significant local changes and a considerable degree of flexibility of the DNA-binding domain with respect to the dimerization domain. Furthermore, all five structures deviate significantly from the structure in the DtxR-DNA complex with respect to overall domain orientation. These results confirm the importance of the hinge motion for repressor activity. Since the third domain has often been invisible in previous crystal structures of DtxR, it is also noteworthy that the SH3-like domain could be traced in four of the five crystal structures.


Subject(s)
Bacterial Proteins/chemistry , DNA-Binding Proteins/chemistry , Protein Isoforms/chemistry , Bacterial Proteins/metabolism , Crystallography, X-Ray , DNA-Binding Proteins/metabolism , Models, Molecular , Protein Conformation , Protein Isoforms/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism
6.
J Biol Chem ; 276(8): 5959-66, 2001 Feb 23.
Article in English | MEDLINE | ID: mdl-11053439

ABSTRACT

Iron-dependent regulators are primary transcriptional regulators of virulence factors and iron scavenging systems that are important for infection by several bacterial pathogens. Here we present the 2.0-A crystal structure of the wild type iron-dependent regulator from Mycobacterium tuberculosis in its fully active holorepressor conformation. Clear, unbiased electron density for the Src homology domain 3-like third domain, which is often invisible in structures of iron-dependent regulators, was revealed by density modification and averaging. This domain is one of the rare examples of Src homology domain 3-like folds in bacterial proteins, and, in addition, displays a metal binding function by contributing two ligands, one Glu and one Gln, to the pentacoordinated cobalt atom at metal site 1. Both metal sites are fully occupied, and tightly bound water molecules at metal site 1 ("Water 1") and metal site 2 ("Water 2") are identified unambiguously. The main chain carbonyl of Leu4 makes an indirect interaction with the cobalt atom at metal site 2 via Water 2, and the adjacent residue, Val5, forms a rare gamma turn. Residues 1-3 are well ordered and make numerous interactions. These ordered solvent molecules and the conformation and interactions of the N-terminal pentapeptide thus might be important in metal-dependent activation.


Subject(s)
Bacterial Proteins/chemistry , Metalloproteins/chemistry , Mycobacterium tuberculosis , Repressor Proteins/chemistry , src Homology Domains , Apoproteins/chemistry , Binding Sites , Cobalt , Crystallography , DNA-Binding Proteins/chemistry , Models, Molecular
7.
Int J Med Microbiol ; 290(4-5): 403-8, 2000 Oct.
Article in English | MEDLINE | ID: mdl-11111918

ABSTRACT

In polarized cells, signal transduction by cholera toxin (CT) requires apical endocytosis and retrograde transport into Golgi cisternae and likely endoplasmic reticulum (ER) (Lencer et al., J. Cell Biol. 131, 951-962 (1995)). We have recently found that the toxin's apical membrane receptor ganglioside GM1 acts specifically in this signal transduction pathway, likely by coupling CT with caveolae or caveolae-related membrane domains (lipid rafts) (Wolf et al., J. Cell Biol. 141, 917-927 (1998)). Work in progress shows that 1) cholesterol depletion uncouples the CT-GM1 receptor complex from signal transduction, a characteristic of lipid rafts; 2) the GM1 acyl chains rather than the carbohydrate head groups appear to account for the structural basis of ganglioside specificity in toxin trafficking; and 3) intestinal epithelial cells obtained from normal adult humans exhibit lipid rafts which differentiate between CT-GM1 and LTIIb-GD1a complexes and which contain caveolin 1.


Subject(s)
Caveolae/metabolism , Cholera Toxin/metabolism , Animals , Detergents/pharmacology , G(M1) Ganglioside/metabolism , Humans , Protein Subunits , Signal Transduction
8.
Proc Natl Acad Sci U S A ; 97(26): 14662-7, 2000 Dec 19.
Article in English | MEDLINE | ID: mdl-11106366

ABSTRACT

The latent ADP-ribosyltransferase activity of cholera toxin (CT) that is activated after proteolytic nicking and reduction is associated with the CT A1 subunit (CTA1) polypeptide. This activity is stimulated in vitro by interaction with eukaryotic proteins termed ADP-ribosylation factors (ARFs). We analyzed this interaction in a modified bacterial two-hybrid system in which the T18 and T25 fragments of the catalytic domain of Bordetella pertussis adenylate cyclase were fused to CTA1 and human ARF6 polypeptides, respectively. Direct interaction between the CTA1 and ARF6 domains in these hybrid proteins reconstituted the adenylate cyclase activity and permitted cAMP-dependent signal transduction in an Escherichia coli reporter system. We constructed improved vectors and reporter strains for this system, and we isolated variants of CTA1 that showed greatly decreased ability to interact with ARF6. Amino acid substitutions in these CTA1 variants were widely separated in the primary sequence but were contiguous in the three-dimensional structure of CT. These residues, which begin to define the ARF interaction motif of CTA1, are partially buried in the crystal structure of CT holotoxin, suggesting that a change in the conformation of CTA1 enables it to bind to ARF. Variant CTA polypeptides containing these substitutions assembled into holotoxin as well as wild-type CTA, but the variant holotoxins showed greatly reduced enterotoxicity. These findings suggest functional interaction between CTA1 and ARF is required for maximal toxicity of CT in vivo.


Subject(s)
ADP-Ribosylation Factors/metabolism , Cholera Toxin/metabolism , Peptides/metabolism , ADP-Ribosylation Factor 6 , ADP-Ribosylation Factors/chemistry , ADP-Ribosylation Factors/genetics , Adenylyl Cyclases/genetics , Amino Acid Motifs , Bordetella pertussis/enzymology , Bordetella pertussis/genetics , Cholera Toxin/chemistry , Cholera Toxin/genetics , Gene Expression , Genetic Complementation Test , Genetic Engineering , Humans , Models, Molecular , Peptides/chemistry , Peptides/genetics , Plasmids , Protein Structure, Secondary , Recombinant Fusion Proteins/genetics , Two-Hybrid System Techniques
9.
Am J Physiol Gastrointest Liver Physiol ; 278(6): G895-904, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10859219

ABSTRACT

In intestinal epithelia, cholera and related toxins elicit a cAMP-dependent chloride secretory response fundamental to the pathogenesis of toxigenic diarrhea. We recently proposed that specificity of cholera toxin (CT) action in model intestinal epithelia may depend on the toxin's cell surface receptor ganglioside G(M1). Binding G(M1) enabled the toxin to elicit a response, but forcing the toxin to enter the cell by binding the closely related ganglioside G(D1a) rendered the toxin inactive. The specificity of ganglioside function correlated with the ability of G(M1) to partition CT into detergent-insoluble glycosphingolipid-rich membranes (DIGs). To test the biological plausibility of these hypotheses, we examined native human intestinal epithelia. We show that human small intestinal epithelia contain DIGs that distinguish between toxin bound to G(M1) and G(D1a), thus providing a possible mechanism for enterotoxicity associated with CT. We find direct evidence for the presence of caveolin-1 in DIGs from human intestinal epithelia but find that these membranes are heterogeneous and that caveolin-1 is not a structural component of apical membrane DIGs that contain CT.


Subject(s)
Caveolins , Detergents/pharmacology , Escherichia coli Proteins , G(M1) Ganglioside/metabolism , Intestinal Mucosa/drug effects , Intestinal Mucosa/metabolism , Membrane Proteins/metabolism , Bacterial Toxins/metabolism , Caveolin 1 , Cell Polarity , Cholera Toxin/metabolism , Culture Techniques , Enterotoxins/metabolism , Glycosphingolipids/metabolism , Homeostasis , Humans , Intestinal Mucosa/cytology , Intestinal Mucosa/physiology , Membranes/drug effects , Membranes/metabolism , Solubility
10.
J Infect Dis ; 181 Suppl 1: S156-67, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10657208

ABSTRACT

Diphtheria toxin (DT) is an extracellular protein of Corynebacterium diphtheriae that inhibits protein synthesis and kills susceptible cells. The gene that encodes DT (tox) is present in some corynephages, and DT is only produced by C. diphtheriae isolates that harbor tox+ phages. The diphtheria toxin repressor (DtxR) is a global regulatory protein that uses Fe2+ as co-repressor. Holo-DtxR represses production of DT, corynebacterial siderophore, heme oxygenase, and several other proteins. Diagnostic tests for toxinogenicity of C. diphtheriae are based either on immunoassays or on bioassays for DT. Molecular analysis of tox and dtxR genes in recent clinical isolates of C. diphtheriae revealed several tox alleles that encode identical DT proteins and multiple dtxR alleles that encode five variants of DtxR protein. Therefore, recent clinical isolates of C. diphtheriae produce a single antigenic type of DT, and diphtheria toxoid continues to be an effective vaccine for immunization against diphtheria.


Subject(s)
Corynebacterium diphtheriae/genetics , Diphtheria Toxin/genetics , Diphtheria Toxin/metabolism , Diphtheria/epidemiology , Diphtheria/microbiology , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Corynebacterium diphtheriae/metabolism , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Diphtheria Toxin/chemistry , Genes, Bacterial , Humans , Molecular Epidemiology
11.
J Bacteriol ; 182(2): 432-8, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10629190

ABSTRACT

The diphtheria toxin repressor (DtxR) of Corynebacterium diphtheriae uses Fe(2+) as a corepressor. Holo-DtxR inhibits transcription from the iron-regulated promoters (IRPs) designated IRP1 through IRP5 as well as from the promoters for the tox and hmuO genes. DtxR binds to 19-bp operators with the consensus sequence 5'-TTAGGTTAGCCTAACCTAA-3', a perfect 9-bp palindrome interrupted by a single C. G base pair. Among the seven known DtxR-specific operators, IRP3 exhibits the weakest binding to DtxR. The message (sense) strand of the IRP3 operator (5'-TTAGGTGAGACGCACCCAT-3' [nonconsensus nucleotides underlined]) overlaps by 2 nucleotides at its 5' end with the putative -10 sequence of the IRP3 promoter. The underlined C at position +7 from the center of the IRP3 operator [C(+7)] is unique, because T is conserved at that position in other DtxR-specific operators. The present study examined the effects of nucleotide substitutions at position +7 or -7 in the IRP3 operator. In gel mobility shift assays, only the change of C(+7) to the consensus nucleotide T caused a dramatic increase in the binding of DtxR, whereas other nucleotide substitutions for C(+7) or replacements for A(-7) had only small positive or negative effects on DtxR binding. All substitutions for C(+7) or A(-7) except for A(-7)C dramatically decreased IRP3 promoter strength. In contrast, the A(-7)C variant caused increased promoter strength at the cost of nearly eliminating repressibility by DtxR. The message (sense) strand of the IRP1 operator (5'-TTAGGTTAGCCAAACCTTT-3') includes the -35 region of the IRP3 promoter. A T(+7)C variant of the IRP1 operator was also constructed, and it was shown to exhibit decreased binding to DtxR, decreased repressibility by DtxR, and increased promoter strength. The nucleotides at positions +7 and -7 in DtxR-specific operators are therefore important determinants of DtxR binding and repressibility of transcription by DtxR, and they also have significant effects on promoter activity for IRP3 and IRP1.


Subject(s)
Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Corynebacterium diphtheriae/genetics , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Operon , Promoter Regions, Genetic , Base Sequence , Cloning, Molecular , Corynebacterium diphtheriae/metabolism , DNA Footprinting , Iron Regulatory Protein 1 , Iron-Regulatory Proteins , Iron-Sulfur Proteins/genetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Binding/genetics , RNA-Binding Proteins/genetics , Structure-Activity Relationship
12.
J Mol Biol ; 292(3): 653-67, 1999 Sep 24.
Article in English | MEDLINE | ID: mdl-10497029

ABSTRACT

The diphtheria toxin repressor (DtxR) is the prototype of a family of iron-dependent regulator (IdeR) proteins, which are activated by divalent iron and bind DNA to prevent the transcription of downstream genes. In Corynebacterium diphtheriae, DtxR regulates not only the expression of diphtheria toxin encoded by a corynebacteriophage, but also of components of the siderophore-mediated iron-transport system. Here we report the crystal structure of wild-type DtxR, a 226 residue three-domain dimeric protein, activated by cobalt and bound to a 21 bp DNA duplex based on the consensus operator sequence. Two DtxR dimers surround the DNA duplex which is distorted compared to canonical B -DNA. The SH3-like third domain interacts with the metal at site 1 via the side-chains of Glu170 and Gln173, revealing for the first time a metal-binding function for this class of domains. The SH3-like domain is also in contact with the DNA-binding first domain and with the second, or dimerization, domain. The DNA-binding helices in the first domain are shifted by 3 to 5 A when compared to the apo-repressor, and fit into the major groove of the duplex bound. These shifts are due to a hinge-binding motion of the DNA-binding domain with respect to the dimerization domains of DtxR. The third domain might play a role in regulating this hinge motion.


Subject(s)
Bacterial Proteins/chemistry , Cobalt/pharmacology , Corynebacterium diphtheriae/chemistry , DNA-Binding Proteins/chemistry , DNA/chemistry , Repressor Proteins/chemistry , src Homology Domains/genetics , Binding Sites , Cobalt/chemistry , Crystallography, X-Ray , Models, Molecular , Nucleic Acid Conformation , Oligodeoxyribonucleotides/chemistry , Protein Conformation , Protein Structure, Secondary
13.
Biochim Biophys Acta ; 1450(3): 177-90, 1999 Jul 08.
Article in English | MEDLINE | ID: mdl-10395933

ABSTRACT

In nature, cholera toxin (CT) and the structurally related E. coli heat labile toxin type I (LTI) must breech the epithelial barrier of the intestine to cause the massive diarrhea seen in cholera. This requires endocytosis of toxin-receptor complexes into the apical endosome, retrograde transport into Golgi cisternae or endoplasmic reticulum (ER), and finally transport of toxin across the cell to its site of action on the basolateral membrane. Targeting into this pathway depends on toxin binding ganglioside GM1 and association with caveolae-like membrane domains. Thus to cause disease, both CT and LTI co-opt the molecular machinery used by the host cell to sort, move, and organize their cellular membranes and substituent components.


Subject(s)
Cell Membrane/metabolism , Cholera Toxin/metabolism , Epithelial Cells/metabolism , Escherichia coli Proteins , Intestinal Mucosa/metabolism , Bacterial Toxins/chemistry , Bacterial Toxins/metabolism , Biological Transport , Cholera Toxin/chemistry , Endocytosis , Enterotoxins/chemistry , Enterotoxins/metabolism , G(M1) Ganglioside/metabolism , Humans , Intracellular Membranes/metabolism , Signal Transduction , Tumor Cells, Cultured
14.
J Bacteriol ; 181(11): 3402-8, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10348851

ABSTRACT

Exochelin is the primary extracellular siderophore of Mycobacterium smegmatis, and the iron-regulated fxbA gene encodes a putative formyltransferase, an essential enzyme in the exochelin biosynthetic pathway (E. H. Fiss, Y. Yu, and W. R. Jacobs, Jr., Mol. Microbiol. 14:557-569, 1994). We investigated the regulation of fxbA by the mycobacterial IdeR, a homolog of the Corynebacterium diphtheriae iron regulator DtxR (M. P. Schmitt, M. Predich, L. Doukhan, I. Smith, and R. K. Holmes, Infect. Immun. 63:4284-4289, 1995). Gel mobility shift experiments showed that IdeR binds to the fxbA regulatory region in the presence of divalent metals. DNase I footprinting assays indicated that IdeR binding protects a 28-bp region containing a palindromic sequence of the fxbA promoter that was identified in primer extension assays. fxbA regulation was measured in M. smegmatis wild-type and ideR mutant strains containing fxbA promoter-lacZ fusions. These experiments confirmed that fxbA expression is negatively regulated by iron and showed that inactivation of ideR results in iron-independent expression of fxbA. However, the levels of its expression in the ideR mutant were approximately 50% lower than those in the wild-type strain under iron limitation, indicating an undefined positive role of IdeR in the regulation of fxbA.


Subject(s)
Bacterial Proteins/metabolism , Gene Expression Regulation, Bacterial/drug effects , Iron/pharmacology , Mycobacterium/genetics , Repressor Proteins , Transcription, Genetic/genetics , Bacterial Proteins/genetics , Base Sequence , Binding Sites , Cations, Divalent/pharmacology , DNA Footprinting , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Genes, Bacterial/genetics , Genes, Reporter , Hydroxymethyl and Formyl Transferases/genetics , Mutation , Mycobacterium/drug effects , Mycobacterium/enzymology , Promoter Regions, Genetic/genetics , Protein Binding/drug effects , RNA, Messenger/analysis , RNA, Messenger/genetics , Response Elements/genetics , Sequence Homology, Amino Acid , Transcription, Genetic/drug effects , beta-Galactosidase/genetics , beta-Galactosidase/metabolism
15.
Infect Immun ; 67(4): 1806-11, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10085021

ABSTRACT

The homodimeric diphtheria toxin repressor (DtxR) uses Fe2+ as a corepressor, binds to iron-regulated promoters, and negatively regulates the syntheses of diphtheria toxin, corynebacterial siderophore, and several other Corynebacterium diphtheriae products. The crystal structure of DtxR shows that the second domain of each monomer has two binding sites for Fe2+ or certain other divalent metal ions. In addition, site 1 binds a sulfate or phosphate anion, suggesting that phosphate may function intracellularly as a co-corepressor. The effects of alanine substitutions for selected residues in sites 1 and 2 were determined by measuring the beta-galactosidase activities of a tox operator/promoter-lacZ reporter construct in Escherichia coli strains expressing each DtxR variant. Our studies demonstrated that single alanine substitutions for the anion-binding residues in site 1 (R80A, S126A, or N130A) caused severely decreased DtxR activity, similar to the effects of alanine substitutions for metal-binding residues in site 2 (C102A, E105A, or H106A) and greater than the effects of alanine substitutions for metal-binding residues in site 1 (H79A, E83A, or H98A) reported previously by other investigators. Various combinations of alanine substitutions for site 1 and site 2 residues were also analyzed to further elucidate the roles of these cation- and anion-binding ligands in DtxR activity. Furthermore, the interaction between residue E20 in the DNA binding domain and R80 in anion/cation binding site 1 was analyzed, and the E20A variant of DtxR was shown to have a phenotype indistinguishable from that of the R80A variant. Our data demonstrated for the first time that the anion-binding residues R80, S126, and N130 at site 1 are essential for DtxR activity. The data also showed that the interaction of E20 in domain 1 with R80 in domain 2, first revealed by X-ray crystallography in apo-DtxR and holo-DtxR, is a structural feature of DtxR that is important for its repressor activity.


Subject(s)
Bacterial Proteins/metabolism , DNA-Binding Proteins/metabolism , Amino Acid Substitution , Anions , Arginine , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Binding Sites , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/genetics , Glutamic Acid , Mutagenesis, Site-Directed , Structure-Activity Relationship
16.
J Mol Biol ; 285(3): 1145-56, 1999 Jan 22.
Article in English | MEDLINE | ID: mdl-9887269

ABSTRACT

Iron-dependent regulators are a family of metal-activated DNA binding proteins found in several Gram-positive bacteria. These proteins are negative regulators of virulence factors and of proteins of bacterial iron-uptake systems. In this study we present the crystal structure of the iron-dependent regulator (IdeR) from Mycobacterium tuberculosis, the causative agent of tuberculosis. The protein crystallizes in the hexagonal space group P62 with unit cell dimensions a=b=92.6 A, c=63.2 A. The current model comprises the N-terminal DNA-binding domain (residues 1-73) and the dimerization domain (residues 74-140), while the third domain (residues 141-230) is too disordered to be included. The molecule lies on a crystallographic 2-fold axis that generates the functional dimer. The overall structure of the monomer shares many features with the homologous regulator, diphtheria toxin repressor (DtxR) from Corynebacterium diphtheriae. The IdeR structure in complex with Zinc reported here is, however, the first wild-type repressor structure with both metal binding sites fully occupied. This crystal structure reveals that both Met10 and most probably the Sgamma of Cys102 are ligands of the second metal binding site. In addition, there are important changes in the tertiary structure between apo-DtxR and holo-IdeR bringing the putative DNA binding helices closer together in the holo repressor. The mechanism by which metal binding may cause these structural changes between apo and holo wild-type repressor is discussed.


Subject(s)
Bacterial Proteins/chemistry , Binding Sites , Mycobacterium tuberculosis/metabolism , Crystallography, X-Ray , DNA-Binding Proteins/chemistry , Dimerization , Models, Molecular , Protein Conformation , Repressor Proteins/chemistry , Zinc/metabolism
17.
J Mol Biol ; 282(5): 1043-59, 1998 Oct 09.
Article in English | MEDLINE | ID: mdl-9753553

ABSTRACT

Crystals of the 61 kDa complex of the cholera toxin B-pentamer with the ganglioside GM1 receptor pentasaccharide diffract to near-atomic resolution. We have refined the crystallographic model for this complex using anisotropic displacement parameters for all atoms to a conventional crystallographic residual R=0.129 for all observed Bragg reflections in the resolution range 22 A to 1.25 A. Remarkably few residues show evidence of discrete conformational disorder. A notable exception is a minority conformation found for the Cys9 side-chain, which implies that the Cys9-Cys86 disulfide linkage is incompletely formed. In all five crystallographically independent instances, the peptide backbone in the region of the receptor-binding site shows evidence of strain, including unusual bond lengths and angles, and a highly non-planar (omega=153.7(7) degrees) peptide group between residues Gln49 and Val50. The location of well-ordered water molecules at the protein surface is notable reproduced among the five crystallographically independent copies of the peptide chain, both at the receptor-binding site and elsewhere. The 5-fold non-crystallographic symmetry of this complex allows an evaluation of the accuracy, reproducibility, and derived error estimates from refinement of large structures at near-atomic resolution. We find that blocked-matrix treatment of parameter covariance underestimates the uncertainty of atomic positions in the final model by approximately 10% relative to estimates based either on full-matrix inversion or on the 5-fold non-crystallographic symmetry.


Subject(s)
Cholera Toxin/chemistry , Cholera Toxin/metabolism , G(M1) Ganglioside/metabolism , Models, Molecular , Receptors, Cell Surface/metabolism , Binding Sites , Crystallography, X-Ray , Hydrogen , Protein Conformation , Solvents
18.
J Biol Chem ; 273(35): 22420-7, 1998 Aug 28.
Article in English | MEDLINE | ID: mdl-9712865

ABSTRACT

The diphtheria toxin repressor (DtxR) from Corynebacterium diphtheriae is a divalent metal-activated repressor of chromosomal genes that encode proteins responsible for siderophore-mediated iron uptake and also of the gene of certain corynebacteriophages that encodes diphtheria toxin. DtxR consists of two 25.3-kDa three-domain subunits and is a member of a family of related repressor proteins in several Gram-positive bacterial species, some of which are important human pathogens. In this paper, we report on the first high resolution crystal structures of apo-DtxR in two related space groups. In addition, crystal structures of Zn-DtxR were determined in the same two space groups. The resolutions of the structures range from 2.2 to 2.4 A. The four refined models of the apo- and the holo-repressor exhibit quite similar metal binding centers, which do, however, show higher thermal motion in the apo-structures. All four structures reported differ from each other in one important aspect. The N-terminal DNA-binding domain and the last 20 residues of the dimerization domain of each subunit move significantly with respect to the core of the DtxR dimer, which consists of residues 74-120 from both subunits. These results provide the first indication of a conformational change that may occur upon binding of the holo-repressor to DNA.


Subject(s)
Bacterial Proteins/metabolism , DNA-Binding Proteins/metabolism , Bacterial Proteins/chemistry , Binding Sites , Corynebacterium diphtheriae/metabolism , Crystallography, X-Ray , DNA-Binding Proteins/chemistry , Metals/metabolism , Models, Molecular , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism
19.
J Cell Biol ; 141(4): 917-27, 1998 May 18.
Article in English | MEDLINE | ID: mdl-9585411

ABSTRACT

In polarized cells, signal transduction by cholera toxin (CT) requires apical endocytosis and retrograde transport into Golgi cisternae and perhaps ER (Lencer, W.I., C. Constable, S. Moe, M. Jobling, H.M. Webb, S. Ruston, J.L. Madara, T. Hirst, and R. Holmes. 1995. J. Cell Biol. 131:951-962). In this study, we tested whether CT's apical membrane receptor ganglioside GM1 acts specifically in toxin action. To do so, we used CT and the related Escherichia coli heat-labile type II enterotoxin LTIIb. CT and LTIIb distinguish between gangliosides GM1 and GD1a at the cell surface by virtue of their dissimilar receptor-binding B subunits. The enzymatically active A subunits, however, are homologous. While both toxins bound specifically to human intestinal T84 cells (Kd approximately 5 nM), only CT elicited a cAMP-dependent Cl- secretory response. LTIIb, however, was more potent than CT in eliciting a cAMP-dependent response from mouse Y1 adrenal cells (toxic dose 10 vs. 300 pg/well). In T84 cells, CT fractionated with caveolae-like detergent-insoluble membranes, but LTIIb did not. To investigate further the relationship between the specificity of ganglioside binding and partitioning into detergent-insoluble membranes and signal transduction, CT and LTIIb chimeric toxins were prepared. Analysis of these chimeric toxins confirmed that toxin-induced signal transduction depended critically on the specificity of ganglioside structure. The mechanism(s) by which ganglioside GM1 functions in signal transduction likely depends on coupling CT with caveolae or caveolae-related membrane domains.


Subject(s)
Bacterial Toxins/pharmacokinetics , Cell Membrane/physiology , Cell Membrane/ultrastructure , Cholera Toxin/pharmacokinetics , Enterotoxins/pharmacokinetics , Epithelial Cells/physiology , Escherichia coli Proteins , G(M1) Ganglioside/physiology , Gangliosides/physiology , Intestinal Mucosa/physiology , Receptors, Cell Surface/physiology , Signal Transduction/physiology , Adrenal Glands , Animals , Bacterial Toxins/biosynthesis , Bacterial Toxins/pharmacology , Cell Line , Cell Membrane/drug effects , Cell Polarity , Chlorides/metabolism , Cholera Toxin/biosynthesis , Cholera Toxin/pharmacology , Cloning, Molecular , Cyclic AMP/metabolism , Enterotoxins/biosynthesis , Enterotoxins/pharmacology , Epithelial Cells/drug effects , Epithelial Cells/ultrastructure , Escherichia coli , G(M1) Ganglioside/chemistry , Humans , Intestinal Mucosa/drug effects , Intestinal Mucosa/ultrastructure , Kinetics , Membrane Lipids/physiology , Mice , Polymerase Chain Reaction , Receptors, Cell Surface/chemistry , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/pharmacokinetics , Recombinant Fusion Proteins/pharmacology , Signal Transduction/drug effects
20.
Infect Immun ; 66(2): 462-8, 1998 Feb.
Article in English | MEDLINE | ID: mdl-9453596

ABSTRACT

One strategy for the induction of mucosal immune responses by oral immunization is to administer the antigen in conjunction with cholera toxin. Cholera toxin consists of one A polypeptide (CTA) which is noncovalently linked to five B subunits (CTB) via the A2 portion of the A subunit (CTA2). Coupling of antigens to the nontoxic B subunit of cholera toxin may improve the immunogenicity of antigens by targeting them to GM1 ganglioside on M cells and intestinal epithelial cells. Here, we describe the construction of a translational fusion protein containing the serine-rich Entamoeba histolytica protein (SREHP), a protective amebic antigen, fused to a maltose binding protein (MBP) and to CTA2. When coexpressed in Escherichia coli with the CTB gene, these proteins assembled into a holotoxin-like chimera containing MBP-SREHP-CTA2 and CTB. This holotoxin-like chimera (SREHP-H) inhibited the binding of cholera toxin to GM1 ganglioside. Oral vaccination of mice with SREHP-H induced mucosal immunoglobulin A (IgA) and serum IgG antiamebic antibodies and low levels of mucosal anti-CTB antibodies. Our studies confirm that the genetic coupling of antigens to CTA2 and their coexpression in E. coli can produce holotoxin-like molecules that are mucosally immunogenic without the requirement for supplemental cholera toxin, and they establish the SREHP-H protein as a candidate for evaluation as a vaccine to prevent amebiasis.


Subject(s)
Antibodies, Protozoan/blood , Cholera Toxin/immunology , Entamoeba histolytica/immunology , Protozoan Proteins/immunology , Recombinant Fusion Proteins/immunology , Animals , Female , Immunity, Mucosal , Immunoglobulin A/blood , Immunoglobulin G/blood , Mice , Mice, Inbred BALB C
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