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1.
J Gen Virol ; 74 ( Pt 6): 1011-6, 1993 Jun.
Article in English | MEDLINE | ID: mdl-8389797

ABSTRACT

To investigate the mechanism of kinetic action and substrate recognition of varicella-zoster virus (VZV) thymidine kinase (TK), we designed and isolated a site-directed mutant VZV TK which has double amino acid substitutions, 136threonine to leucine and 137isoleucine to leucine (SDM TK). This mutant was designed to alter the substrate-binding site of the VZV TK to duplicate that of the herpes simplex virus type 2 enzyme. Kinetic studies of the activity of wild-type TK indicated that the binding order of ATP and thymidine is random and that wild-type VZV TK possessed high thymidylate kinase (TM-K) activity. The sensitivity of VZV TK to bisubstrate analogues, dinucleotides of adenosine and thymidine, showed that the optimum distance between the ATP- and substrate-binding sites is two phosphoryl groups greater than with the natural substrate for TK activity. SDM TK lost deoxycytidine kinase activity and had reduced TK and TM-K activities. Inhibition studies on both WT and SDM TK by 5-halogenovinyluridine analogues and their 5' monophosphate derivatives revealed that amino acids at positions 136 and 137 are involved in substrate binding, probably through a role in the formation of the binding pocket for bulky substrates.


Subject(s)
Herpesvirus 3, Human/enzymology , Thymidine Kinase/metabolism , Amino Acid Sequence , Base Sequence , Binding Sites , Escherichia coli/genetics , Herpesvirus 3, Human/genetics , Kinetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Mutation , Nucleotides/metabolism , Nucleotides/pharmacology , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Substrate Specificity , Thymidine Kinase/antagonists & inhibitors , Thymidine Kinase/genetics , Thymidine Kinase/isolation & purification , Uridine/analogs & derivatives
2.
Microbiol Immunol ; 37(6): 511-3, 1993.
Article in English | MEDLINE | ID: mdl-8231965

ABSTRACT

The mechanism of the inhibitory action of 1-beta-D-arabinofuranosyl-E-5-(2-bromovinyl) uracil triphosphate (BV-araUTP) on DNA synthesis by Escherichia coli DNA polymerase I Klenow fragment was studied. Acting as a chain terminator, BV-araUTP inhibited DNA synthesis by Klenow fragment more effectively than 2',3'-dideoxythymidine triphosphate (ddTTP). However, the incorporation sites of BV-araU monophosphate were restricted at consecutive dTMP sequence whereas ddTMP was incorporated at every dTMP site.


Subject(s)
Antiviral Agents/pharmacology , Arabinofuranosyluracil/analogs & derivatives , DNA, Bacterial/biosynthesis , DNA, Bacterial/drug effects , Escherichia coli/genetics , Arabinofuranosyluracil/pharmacology , DNA Polymerase I/drug effects , Dideoxynucleotides , Thymine Nucleotides/pharmacology
3.
Virology ; 190(1): 527-30, 1992 Sep.
Article in English | MEDLINE | ID: mdl-1382344

ABSTRACT

Herpesvirus saimiri (HSV) is a T-lymphotropic tumor virus that causes fulminant lymphomas and leukemias in various New World primates other than its natural host, the squirrel monkey (Saimiri sciureus). In the course of completing the nucleotide sequence of its genome, we identified an open reading frame of 363 nucleotides, designated HVS-15, that has no detectable homology to any other viral sequences to date. HVS-15 encodes a 121-amino-acid protein which shows significant similarities to human CD59, a phosphatidyl-inositol-glycan-anchored glycoprotein involved in T-cell activation and restriction of complement-mediated lysis. The predicted HVS-15 gene product is more similar to human CD59 than to the related murine Ly-6 antigens. A nucleotide sequence identity of 64% was found between HVS-15 and the CD59 reading frame, and a 48% identity exists between the corresponding protein sequences. The comparison of the amino acid sequences revealed a number of conserved structural features such as a similar pattern of hydrophobic termini and an identical cysteine skeleton.


Subject(s)
Antigens, CD/genetics , Genes, Viral , Herpesvirus 2, Saimiriine/genetics , Membrane Glycoproteins/genetics , Viral Proteins/genetics , Amino Acid Sequence , Base Sequence , CD59 Antigens , DNA, Viral , Humans , Molecular Sequence Data , Sequence Homology, Nucleic Acid
4.
J Gen Virol ; 73 ( Pt 7): 1649-60, 1992 Jul.
Article in English | MEDLINE | ID: mdl-1321205

ABSTRACT

The nucleotide sequence of a 12 kbp HindIII fragment (HindIII C) from the right end of the unique component of the genome of human herpesvirus 6 (HHV-6) (strain U1102) was determined. The sequence has a mean G + C content of 42% and contains approximately 28 copies of a tandemly repeated 104 to 107 bp element, which, with a single exception, contain a cleavage site for KpnI (the KpnI repeats). Each of these elements contains potential binding sites for transcription factors NF-kappa B and AP2. The KpnI repeats lie immediately upstream of a region previously identified as a candidate immediate early (IE) gene locus and therefore may constitute an IE gene enhancer element. One incomplete and six complete open reading frames (ORFs) were identified in the unique sequence of the HindIII C fragment. The predicted products of these ORFs do not include homologues of proteins encoded by members of the alpha- or gamma-herpesvirus sub-family. However, the HindIII C fragment does contain a homologue of the US22 gene family, previously found only in the beta-herpesvirus human cytomegalovirus (HCMV). These findings provide evidence that the close phylogenetic relationship between HHV-6 and HCMV is not confined to the beta-herpesvirus-specific arrangement of conserved replicative and structural genes which has been demonstrated previously.


Subject(s)
Cytomegalovirus/genetics , Enhancer Elements, Genetic , Genes, Viral , Herpesvirus 6, Human/genetics , Sequence Homology, Nucleic Acid , Amino Acid Sequence , Base Sequence , DNA, Viral/chemistry , Humans , Molecular Sequence Data , Open Reading Frames , Repetitive Sequences, Nucleic Acid , Transcription, Genetic , Viral Proteins/chemistry
5.
Virology ; 188(1): 296-310, 1992 May.
Article in English | MEDLINE | ID: mdl-1314457

ABSTRACT

We present an analysis of 43,658 bp of contiguous nucleotide sequence comprising the right terminal region (conventional orientation) of the unique protein-coding component (L-DNA) of the herpesvirus saimiri (HVS) genome. Within this region lie the genes encoding the 160-kDa virion protein, which is homologous to the 140-kDa membrane antigen of Epstein-Barr virus (EBV), thymidylate synthase (TS), and the immediate-early (IE) 52-kDa protein which is homologous to the EBV BMLF1 product. The 160-kDa gene of HVS lies at the right terminus of HVS L-DNA, its homologue in EBV occurring at the left terminus of the EBV genome (conventional orientation). The TS gene of HVS occurs within a group of 5 genes that have no homologues in EBV. The translation product of one of these genes, ECRF3, shows amino acid sequence and hydrophobicity pattern similarities to the HCMV and cellular G-protein-coupled receptor family of proteins. Another, ECLF2, is homologous to the cyclin family of cellular proteins. The 5 nonconserved genes lie adjacent to the 160-kDa gene. In EBV, the region to the right of the 140-kDa gene (BNRF1) contains the latent replication origin (OriP) and the open reading frames BCRF1, BWRF1 (repeated 12 times), BYRF1, BHLF1, and BHRF1, counterparts of which are not present in this position in HVS. The subsequent 18 genes in EBV (BFLF2 to BLRF2, approximate positions 56,000-89,500) are represented in HVS, and the relative positions and orientations of these genes are directly comparable between the two viruses. There then occurs a nonhomologous gene in HVS, and genes BLLF2 to BZLF1 (positions 89,500 to 103,200) in EBV which are not present in this region of HVS, before collinearity resumes. Thus, the HVS sequence presented here shows general collinearity between conserved genes in the right terminal region of HVS and the left terminal region of EBV and reveals the presence of two sets of unique genes which occur in exactly analogous positions in HVS and EBV.


Subject(s)
DNA, Viral , Herpesvirus 2, Saimiriine/genetics , Herpesvirus 4, Human/genetics , Amino Acid Sequence , Herpesvirus 2, Saimiriine/enzymology , Herpesvirus 4, Human/enzymology , Molecular Sequence Data , Open Reading Frames , Restriction Mapping , Ribonucleotide Reductases/genetics , Sequence Homology, Nucleic Acid , Viral Proteins/chemistry , Viral Proteins/genetics
6.
J Virol ; 66(4): 2118-24, 1992 Apr.
Article in English | MEDLINE | ID: mdl-1312622

ABSTRACT

To understand the relationship between the primary structure and function of varicella-zoster virus thymidine kinase (VZV TK; EC 2.7.1.21), we established rapid screening and phenotypic selection of mutant VZV TK genes in TK-deficient Escherichia coli C600 by using a constitutive pKK223-3 expression plasmid. In this screening system, mutant TK genes generated by random mutagenesis were identified by the sensitivity of E. coli-expressing VZV TKs to 5-bromo-2'-deoxyuridine and 1-beta-D-arabinofuranosyl-E-5-(2-bromovinyl) uracil. Twenty-four mutant clones with amino acid substitutions were isolated, and their nucleotide sequence and enzymatic activities were determined. Of the 24 clones, 20 had single amino acid substitutions, 2 clones had double amino acid substitutions, and 1 clone had triple amino acid substitutions. In 17 cases of single amino acid substitution, six mutations led to lost enzyme activity, and four of these six mutations centered in the ATP-binding site. The other 11 mutations resulted in reduction of both TK and thymidylate kinase activities or only thymidylate kinase activity and were located in scattered positions in the VZV TK gene, although 5 mutations showed a tendency to cluster in the region between positions 251 and 260.


Subject(s)
Herpesvirus 3, Human/genetics , Mutagenesis , Thymidine Kinase/genetics , Amino Acid Sequence , Base Sequence , Binding Sites , Cloning, Molecular , DNA Mutational Analysis , DNA, Viral , Drug Resistance, Microbial , Herpesvirus 3, Human/enzymology , Molecular Sequence Data , Phenotype , Phosphorylation , Thymidine Kinase/metabolism
7.
Nature ; 355(6358): 362-5, 1992 Jan 23.
Article in English | MEDLINE | ID: mdl-1309943

ABSTRACT

Herpesvirus saimiri (HVS) is a T-lymphotropic gammaherpesvirus which establishes asymptomatic infections in its natural host the squirrel monkey (Saimiri sciureus), but which causes fatal lymphoproliferative diseases in other New World primates. Sequencing studies show HVS is closely related to the human B-lymphotropic gammaherpesvirus Epstein-Barr virus (EBV). However, despite the general colinearity between the genomes of HVS and EBV, HVS contains genes not found in EBV or in the genomes of any of the other sequenced herpesviruses. We have identified two genes, occurring in a region of divergence between HVS and EBV, that have cellular homologues. One of these, ECRF3, is homologous to the genes encoding the human cytomegalovirus (HCMV) and cellular G protein-coupled receptor family of proteins. The other HVS gene, ECLF2, is homologous to the genes encoding cellular cyclins and to our knowledge is the first reported example of a viral cyclin. The presence of G protein-coupled receptor and cyclin homologues in HVS suggests that these genes may be important in the regulation of viral and cellular processes during productive and/or latent infection of host cells, and in particular may be of relevance in the transformation and rapid proliferation of T cells during HVS infections of hosts susceptible to HVS-induced lymphoproliferative diseases.


Subject(s)
Cyclins/genetics , GTP-Binding Proteins/genetics , Genome, Viral , Herpesvirus 2, Saimiriine/genetics , Receptors, Cell Surface/genetics , Amino Acid Sequence , Animals , Base Sequence , Cytomegalovirus/genetics , Databases, Factual , Drosophila/genetics , Herpesvirus 2, Saimiriine/metabolism , Humans , Molecular Sequence Data , Protein Biosynthesis , Restriction Mapping , Sequence Homology, Nucleic Acid , Software
8.
J Virol ; 65(10): 5381-90, 1991 Oct.
Article in English | MEDLINE | ID: mdl-1654446

ABSTRACT

Sequencing studies have indicated that the unique component of the human herpesvirus 6 (HHV-6) genome and the unique long segment of the human cytomegalovirus genome are genetically colinear. Of particular interest is the identification of a region of local CpG dinucleotide suppression in the genome of HHV-6, a feature conserved in the genomes of human cytomegalovirus, murine cytomegalovirus, and simian cytomegalovirus, and a characteristic of the major immediate-early loci of these viruses. Adjacent to this region in HHV-6 are approximately 30 copies of a 103- to 108-bp sequence element, which contains consensus binding sites for the transcription factors AP2 and NF kappa B, in addition to a single KpnI recognition site. Together, these KpnI repeat units may compose an immediate-early enhancer, analogous to those found in the cytomegaloviruses. We present the sequence of this region of HHV-6 and demonstrate that a transactivating function is encoded by this region. We have used polymerase chain reaction to synthesize fragments containing open reading frames and 5' sequences with or without the upstream KpnI repeat units. Effector plasmids containing these HHV-6 coding and 5' sequences were able to effect activation of heterologous promoter-chloramphenicol acetyltransferase (CAT) constructs, including adenovirus E3-CAT and E4-CAT, human T-cell lymphotropic virus type I long terminal repeat (LTR)-CAT, and human immunodeficiency virus LTR-CAT, in cotransfection experiments in Vero cells and peripheral blood lymphocytes. Furthermore, we have identified the major open reading frame (RF4; 2.3 kb) as being essential for activation, and we have shown that the NF kappa B, SP1, and TATA box motifs in the human immunodeficiency virus LTR are all required for full induction of the promoter by the HHV-6-encoded transactivator.


Subject(s)
DNA, Viral/genetics , Genes, Viral , Herpesvirus 6, Human/genetics , Transcriptional Activation , Amino Acid Sequence , Animals , Base Sequence , Chloramphenicol O-Acetyltransferase/genetics , Chloramphenicol O-Acetyltransferase/metabolism , Cytomegalovirus/genetics , DNA, Viral/isolation & purification , Enhancer Elements, Genetic , Herpesvirus 6, Human/growth & development , Molecular Sequence Data , Oligonucleotide Probes , Open Reading Frames , Polymerase Chain Reaction , Promoter Regions, Genetic , Repetitive Sequences, Nucleic Acid , Restriction Mapping , TATA Box , Transfection , Vero Cells
9.
J Virol ; 65(5): 2457-66, 1991 May.
Article in English | MEDLINE | ID: mdl-1850023

ABSTRACT

We have reported previously the detection of two stable immediate-early (IE) transcripts that accumulate in cycloheximide-treated cells infected with herpesvirus saimiri (HVS). These are the 1.6-kb mRNA from the 52-kDa gene (which is homologous to the BSLF2-BMLF1 gene of Epstein-Barr virus) and the 1.3-kb mRNA from the HindIII-G fragment of virus DNA. In order to study the roles of the HVS IE gene products in the progression of a lytic infection, the promoter region of the delayed-early 110-kDa gene of HVS was sequenced, the transcription initiation site was mapped by RNase protection, and the promoter sequences were cloned upstream of the chloramphenicol acetyltransferase (CAT) gene. Sequences between -447 and +37 (relative to the 110-kDa transcription initiation site) were sufficient for response to HVS superinfection of transfected cells, but the 110-kDa promoter was activated only poorly by the 52-kDa and HindIII-G IE (IE-G) proteins in cotransfection experiments. However, a distinct region of the genome, EcoRI-D (15 kbp), was able to activate 110-kDa-CAT expression relatively efficiently in similar experiments. A 4.7-kbp PstI fragment encoding this function was isolated and sequenced, and further subcloning identified the gene encoding the EcoRI-D trans activator. This gene, which we now designate HVS.R, is homologous to the BRLF1-encoded transcriptional effector of Epstein-Barr virus.


Subject(s)
Herpesviridae/genetics , Herpesvirus 4, Human/genetics , Immediate-Early Proteins , Promoter Regions, Genetic , Trans-Activators/metabolism , Viral Proteins/genetics , Amino Acid Sequence , Animals , Base Sequence , DNA, Viral , Herpesviridae/physiology , Molecular Sequence Data , Restriction Mapping , Sequence Homology, Nucleic Acid , Transcription, Genetic , Vero Cells , Viral Proteins/metabolism , Virus Replication
10.
Nature ; 351(6321): 78-80, 1991 May 02.
Article in English | MEDLINE | ID: mdl-1851252

ABSTRACT

Human herpesvirus type-6 (HHV-6) is a recently isolated herpesvirus which is highly prevalent in adult populations around the world. HHV-6 was first isolated from the peripheral blood of six individuals with lymphoproliferative disorders, two of whom were also infected with human immunodeficiency virus. HHV-6, in common with other herpesviruses, transactivates the HIV long terminal repeat linked to reporter genes and has in addition been shown to accelerate HIV gene expression and CD4 cell death in cultures co-infected with both viruses. The virus is tropic for CD4+ lymphocytes and persists in the peripheral blood of most seropositive individuals. We have now identified a gene in HHV-6 encoding a 490-amino-acid polypeptide homologous to the human adeno-associated virus type-2 (AAV-2) rep gene. This gene has an essential role in AAV-2 DNA replication, can trans-regulate homologous and heterologous gene expression, and inhibits cellular transformation. The acquisition of rep by HHV-6 could be due to natural transfer of genetic information between DNA viruses of eukaryotes and is likely to have important consequences for the life-cycle of HHV-6 and for the host CD4 cell.


Subject(s)
DNA-Binding Proteins , Dependovirus/genetics , Genes, Viral , Herpesvirus 6, Human/genetics , Viral Proteins/genetics , Amino Acid Sequence , Base Sequence , DNA Replication , Humans , Molecular Sequence Data , Open Reading Frames , Parvoviridae/genetics , RNA, Messenger/genetics , Restriction Mapping , Sequence Homology, Nucleic Acid , TATA Box , Transcription, Genetic
11.
J Gen Virol ; 72 ( Pt 3): 623-30, 1991 Mar.
Article in English | MEDLINE | ID: mdl-1848597

ABSTRACT

We have applied the polymerase chain reaction (PCR) technique to analyse mutations in the thymidine kinase (TK) gene of varicella-zoster virus (VZV) associated with resistance to the 5-bromovinyl (BVaraU) and 5-propynyl (PYaraU) analogues of arabinofuranosyl deoxyuridine. The results from this study allow three clear conclusions to be drawn. Firstly, the technique clearly shows that populations of VZV derived from plaque purification were truly clonal only when the plaques were initiated from cell-free virus (representing a tiny fraction of infectious virus) and plaques initiated by infected cells contained a mixture of variants. Secondly, despite the background mutations caused by errors of the Taq DNA polymerase, mutations relevant to drug resistance can easily be distinguished. The BVaraU-resistant mutant, 7-1, contained an aspartic acid to asparagine mutation at residue 18 and a single base deletion (position 65298 of the VZV DNA sequence), resulting in a frameshift and premature termination of the polypeptide chain, was found in the BVaraU-resistant mutant YSR. PYaraU-resistant virus populations contained viruses with one or more of three independent mutations, i.e. single base substitutions resulting in mutations from leucine to proline at residue 92, histidine to arginine at residue 97 and a deletion of 20bp (residues 65,135 to 65,154). Finally, the technique has uncovered novel sites in the virus TK associated with drug resistance. We conclude that in vitro amplification using the PCR combined with cloning and sequencing is a relatively rapid method for identifying mutations in small virus populations even when they are not homogeneous.


Subject(s)
Antiviral Agents/pharmacology , Arabinofuranosyluracil/analogs & derivatives , DNA, Viral/genetics , Herpesvirus 3, Human/genetics , Thymidine Kinase/genetics , Amino Acid Sequence , Animals , Arabinofuranosyluracil/pharmacology , Base Sequence , Cell Line , Cloning, Molecular , DNA, Viral/chemistry , Drug Resistance, Microbial/genetics , Electrophoresis, Polyacrylamide Gel , Herpesvirus 3, Human/drug effects , Herpesvirus 3, Human/enzymology , Humans , Molecular Sequence Data , Mutation , Polymerase Chain Reaction , Thymidine Kinase/metabolism , Vero Cells
12.
J Gen Virol ; 72 ( Pt 1): 157-68, 1991 Jan.
Article in English | MEDLINE | ID: mdl-1846644

ABSTRACT

More than 50 fragments resulting from complete digestion of the DNA of human herpesvirus 6 (HHV-6, strain U1102) with BamHI, EcoRI, HindIII, KpnI, NruI, SalI or SmaI have been isolated as clones in M13, plasmid, cosmid and lambda vectors. Using these clones, maps have been constructed for the fragments produced by nine restriction enzymes from unit-length virus genomes and from their concatemeric precursors. The unit-length genome is a linear, double-stranded molecule of 161.5 kbp composed of a central segment of a largely unique sequence of 141 kbp (U) with a sequence of 10 kbp duplicated in the same orientation at both 'left' and 'right' genomic termini (i.e. 'left' and 'right' copies of the direct repeat; DRL and DRR). Adopting as standard an orientation in which the major capsid protein gene is 'left' of the gene for alkaline exonuclease, then the 'right' genome termini and DRL. U junctions occur close to or within repetitive (GGGTTA)n sequences. Repetitions of short sequence motifs are present in at least two other regions of the genome. One of these regions consists of a simple repeat (TC/G) of approximately 1.5 kbp in length and is unstable as clones in bacterial vectors. The second region is stably maintained in such vectors and consists of a tandem array of at least 25 copies of a 110 bp sequence containing a single KpnI site. Comparisons of fragments arising from unit-length DNA with those from virus DNA from the nuclei of infected cells have shown that the concatemeric junctions in intracellular DNA contain head-to-tail dimers of the terminal duplications (i.e. ...U1.DRR1.DRL2.U2...). The gross structure established here for the genome from the U1102 isolate of HHV-6 resembles closely that suggested by Pellett and his colleagues for the Z29 isolate and differs from that of the five previously characterized human herpesviruses. This structure of HHV-6 DNA bears a superficial resemblance to that proposed for DNA from channel catfish virus and equine cytomegalovirus.


Subject(s)
Genes, Viral , Herpesvirus 6, Human/genetics , Base Sequence , Cells, Cultured , Cloning, Molecular , Cosmids , DNA, Viral/genetics , DNA, Viral/isolation & purification , Electrophoresis, Agar Gel , Genetic Linkage , Genetic Vectors , Humans , Lymphocytes , Molecular Sequence Data , Nucleic Acid Hybridization , Oligonucleotide Probes , Plasmids , Polymerase Chain Reaction , Restriction Mapping
13.
J Gen Virol ; 71 ( Pt 12): 3005-8, 1990 Dec.
Article in English | MEDLINE | ID: mdl-2177092

ABSTRACT

Transcripts from two immediate early (IE) genes have been identified in cells infected with the gamma herpesvirus, herpesvirus saimiri. One is a 1.3 kb RNA transcribed from the HindIII-G fragment of virus DNA (IE-G), the other is a 1.6 kb RNA from the gene for the IE 52K phosphoprotein. Labelled oligonucleotide probes specific for each of these RNAs have been used in in situ hybridization experiments to compare their expression in individual cells in infected populations. In the presence of cycloheximide, the IE-G RNA accumulates synchronously throughout the population of infected cells and prior to the asynchronous accumulation of RNA from the gene for the IE 52K protein in the same population of cells. This heterogeneity in the timing of expression of RNA from the IE 52K gene is paralleled by the asynchronous accumulation of the protein product. We conclude that transcription of the IE-G RNA is independent of expression of the IE 52K gene and that expression of the 52K gene requires (or is prevented by) factors which do not affect accumulation of the RNA from the IE-G gene.


Subject(s)
Genes, Viral , Herpesvirus 2, Saimiriine/genetics , Animals , Base Sequence , DNA, Viral/genetics , Gene Expression , Molecular Sequence Data , Nucleic Acid Hybridization , Oligonucleotide Probes , RNA, Viral/genetics , Restriction Mapping , Templates, Genetic , Transcription, Genetic , Vero Cells
15.
J Virol ; 64(1): 287-99, 1990 Jan.
Article in English | MEDLINE | ID: mdl-2152817

ABSTRACT

A sequence of 21,858 base pairs from the genome of human herpesvirus 6 (HHV-6) strain U1102 is presented. The sequence has a mean composition of 41% G + C, and the observed frequency of CpG dinucleotides is close to that predicted from this mononucleotide composition. The sequence contains 17 complete open reading frames (ORFs) and part of another at the 5' end of the sequence. The predicted protein products of two of these ORFs have no recognizable homologs in the genomes of other sequenced human herpesviruses (i.e., Epstein-Barr virus [EBV], human cytomegalovirus [HCMV], herpes simplex virus [HSV], and varicella-zoster virus [VZV]). However, the products of nine other ORFs are clearly homologous to a set of genes that is conserved in all other sequenced herpesviruses, including homologs of the alkaline exonuclease, the phosphotransferase, the spliced ORF, and the major capsid protein genes. Measurements of similarity between these homologous sequences showed that HHV-6 is clearly most closely related to HCMV. The degree of relatedness between HHV-6 and HCMV was commensurate with that observed in comparisons between HSV and VZV or EBV and herpesvirus saimiri and significantly greater than its relatedness to EBV, HSV, or VZV. In addition, the gene for the major capsid protein and its 5' neighbor are reoriented with respect to the spliced ORFs in the genomes of both HHV-6 and HCMV relative to the organization observed in EBV, HSV, and VZV. Three ORFs in HHV-6 have recognizable homologs only in the genome of HCMV. Despite differences in gross composition and size, we conclude that the genomes of HHV-6 and HCMV are closely related.


Subject(s)
Cytomegalovirus/genetics , Genes, Viral , Simplexvirus/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , DNA, Recombinant/isolation & purification , DNA, Viral/genetics , Exons , Humans , Introns , Molecular Sequence Data , Promoter Regions, Genetic , Restriction Mapping , Sequence Homology, Nucleic Acid , Viral Structural Proteins/genetics
16.
J Gen Virol ; 70 ( Pt 11): 3003-13, 1989 Nov.
Article in English | MEDLINE | ID: mdl-2555434

ABSTRACT

We present the nucleotide sequence of a region from the genome of the A + T-rich gammaherpesvirus, herpesvirus saimiri (HVS), which includes the coding sequences for the viral thymidine kinase (TK) gene. The organization of genes in this region resembles the homologous region of the Epstein-Barr virus (EBV) genome and is very compact, using overlapping coding sequences and with nucleotides shared by initiation and termination codons of neighbouring reading frames. The HVS TK is predicted to contain a 527 residue polypeptide with the first part of the presumptive nucleotide-binding site [(L, I, V)(F, Y)(I, L)(D, E)(G)(X)(X)(G)(L, I, V, M)(G)(K)(T, S)(T, S)] located at residues 212 to 224. This motif is close to the amino terminus of the TK polypeptides of alphaherpesviruses and the polypeptides of the cellular and poxvirus-encoded enzymes. The corresponding reading frame of the human gammaherpesvirus (EBV) also has a long amino-terminal extension but significant amino acid sequence similarities between the HVS and EBV sequences are not observed until the region of the nucleotide-binding site. Comparisons of these homologous carboxy-terminal sequences of the HVS- and EBV-encoded proteins with those from six alphaherpes viruses and proteins encoded by Marek's disease virus (MDV) and the herpesvirus of turkeys (HVT) confirm that the HVS and EBV sequences are products of a distinct lineage. The sequences of alphaherpesvirus enzymes than to those of HVS and EBV. Comparison of these 10 highly divergent TK sequences extends and refines the identification of essential features of this family of herpesvirus enzymes and defines 19 positions at which all sequences have identical residues.


Subject(s)
Genes, Viral , Herpesvirus 2, Saimiriine/genetics , Thymidine Kinase/genetics , Viral Structural Proteins/genetics , Amino Acid Sequence , Base Sequence , DNA, Viral/genetics , Herpesvirus 2, Saimiriine/enzymology , Molecular Sequence Data , Restriction Mapping
17.
J Gen Virol ; 70 ( Pt 4): 837-55, 1989 Apr.
Article in English | MEDLINE | ID: mdl-2732708

ABSTRACT

The DNA sequences of genomes from G + C-rich and A + T-rich lymphotropic herpesviruses [i.e. gammaherpesviruses; Epstein-Barr virus and herpesvirus saimiri (HVS)] are deficient in CpG dinucleotides and contain an excess of TpG and CpA dinucleotides relative to frequencies predicted from their mononucleotide compositions. In contrast, for sequences from genomes of G + C-rich and A + T-rich neurotropic herpesviruses (i.e. alphaherpesviruses; herpes simplex virus and varicellazoster virus) and human cytomegalovirus (HCMV; a betaherpesvirus) the mean observed frequencies of these dinucleotides are close to those expected from their mononucleotide compositions. Comparisons between DNA sequences that encode proteins conserved in all these viruses also show that sequences of these lymphotropic viruses are CpG-deficient whereas the homologous genes from the neurotropic viruses and the HCMV are not. Analyses of local variations in dinucleotide frequencies reveal some occurrences of clustered CpG dinucleotides in generally deficient genomes (e.g. upstream of the thymidylate synthase gene of HVS) and locally CpG-deficient regions within some generally non-deficient genomes (e.g. the major immediate early genes of human, simian and murine CMVs). A relative deficiency in CpG and an excess of TpG and CpA dinucleotides is a diagnostic feature of higher eukaryotic DNA sequences that have been subjected to methylation of cytosine residues in CpG doublets with the resulting increase in mutations to give TpG (and thereby its complement, CpA). The available evidence implicates the latent genome as the site of methylation of these herpesviruses. We conclude that in the neurotropic herpesviruses the normal latent precursors to infectious progeny are not methylated whereas there is local methylation of the immediate early locus in the latent genomes of CMVs, and the latent genomes of these lymphotropic herpesviruses are extensively methylated.


Subject(s)
DNA, Viral/genetics , Genes, Viral , Herpesviridae/genetics , Nucleotides/genetics , Base Sequence , Molecular Sequence Data , Viral Proteins/genetics
18.
J Gen Virol ; 69 ( Pt 11): 2819-29, 1988 Nov.
Article in English | MEDLINE | ID: mdl-2846759

ABSTRACT

We present the nucleotide sequence of the glycoprotein H (gH) gene of herpesvirus saimiri (HVS), a representative of the T lymphotropic herpesviruses of New World monkeys, and compare the predicted amino acid sequence with sequences of homologous proteins from four human herpesviruses. The HVS gH gene is located within a block of genes encoding products conserved in all herpesvirus subgroups as represented by the human herpesviruses herpes simplex virus, varicella-zoster virus, cytomegalovirus and Epstein-Barr virus. In agreement with the biological grouping of HVS as a lymphotropic gammaherpesvirus, its gH amino acid sequence shows greatest similarity to that of the B lymphotropic Epstein-Barr virus, although the nucleotide sequences of their respective gH genes show little similarity given different G + C compositions of 31% and 54%. The similarity observed between the gH amino acid sequences of the two representative gammaherpesviruses is greater than that between the two human alphaherpesviruses varicella-zoster virus and herpes simplex virus. The members of the gH family range in size from 706 to 743 amino acid residues for the beta- and gammaherpesviruses, to 838 to 841 for the alphaherpesviruses, giving non-glycosylated precursors with Mr values of 78,322 to 93,651. The difference in size is due to heterogeneity in the poorly conserved N-terminal regions of the larger alphaherpesviruses compared to the smaller beta- and gammaherpesvirus molecules. Greatest similarity is observed in the C-terminal halves of the proteins including residues surrounding four conserved cysteine residues, a conserved N-linked glycosylation site (within the sequence NGTV) 13 to 18 residues proximal to the membrane-spanning sequences, and a short cytoplasmic domain of seven or eight residues for the beta- and gammaherpesviruses' and 14 or 15 residues for the alphaherpesviruses' gH. Thus, the representatives of all subgroups of herpesviruses, including those with a non-human host, encode gH homologues. Together with the observation that gH of these viruses are major targets for virus neutralization by antibody, this suggests that this glycoprotein family is essential among all herpesviruses and represents a major component involved in herpesvirus infectivity.


Subject(s)
Herpesvirus 2, Saimiriine/genetics , Viral Envelope Proteins/genetics , Amino Acid Sequence , Base Sequence , DNA, Viral/genetics , Genes, Viral , Molecular Sequence Data , Solubility
19.
J Virol ; 62(9): 3250-7, 1988 Sep.
Article in English | MEDLINE | ID: mdl-2841477

ABSTRACT

We present a sequence of 2,220 nucleotides from a region of the genome of herpesvirus saimiri (HVS) which includes the coding and putative regulatory sequences for the 52-kilodalton (kDa) immediate-early (IE) phosphoprotein of the virus. The amino acid sequence predicted for this protein shows it to be homologous to the EB2 transcriptional effector encoded by the BMLF1 open reading frame of Epstein-Barr virus (EBV), the IE 68-kDa protein of varicella-zoster virus, and the IE 63-kDa (alpha 27) protein of herpes simplex virus (HSV). By measuring the function of the HVS 52-kDa-protein gene in transient expression assays, we also showed that it can substitute with comparable efficiency for the EB2 product of EBV in the EB1-dependent activation of the EBV DR promoter. The alpha 27 gene of HSV was an inefficient trans-activator in similar assays. We conclude that the IE 52-kDa protein of HVS is structurally and functionally more similar to the homologous protein of the human lymphotropic virus, EBV, than to the corresponding proteins from the neurotropic viruses, varicella-zoster virus and HSV.


Subject(s)
Herpesvirus 2, Saimiriine/genetics , Herpesvirus 4, Human/genetics , Phosphoproteins/genetics , Viral Proteins/genetics , Amino Acid Sequence , Animals , Base Sequence , DNA, Viral/genetics , Gene Expression Regulation , Genes, Viral , Molecular Sequence Data , Phosphoproteins/physiology , Plasmids , Promoter Regions, Genetic , Sequence Homology, Nucleic Acid , Transcription Factors/genetics , Vero Cells , Viral Proteins/physiology
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