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1.
J Integr Plant Biol ; 65(10): 2262-2278, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37565550

ABSTRACT

Cadmium (Cd) toxicity severely limits plant growth and development. Moreover, Cd accumulation in vegetables, fruits, and food crops poses health risks to animals and humans. Although the root cell wall has been implicated in Cd stress in plants, whether Cd binding by cell wall polysaccharides contributes to tolerance remains controversial, and the mechanism underlying transcriptional regulation of cell wall polysaccharide biosynthesis in response to Cd stress is unknown. Here, we functionally characterized an Arabidopsis thaliana NAC-type transcription factor, NAC102, revealing its role in Cd stress responses. Cd stress rapidly induced accumulation of NAC102.1, the major transcript encoding functional NAC102, especially in the root apex. Compared to wild type (WT) plants, a nac102 mutant exhibited enhanced Cd sensitivity, whereas NAC102.1-overexpressing plants displayed the opposite phenotype. Furthermore, NAC102 localizes to the nucleus, binds directly to the promoter of WALL-ASSOCIATED KINASE-LIKE PROTEIN11 (WAKL11), and induces transcription, thereby facilitating pectin degradation and decreasing Cd binding by pectin. Moreover, WAKL11 overexpression restored Cd tolerance in nac102 mutants to the WT levels, which was correlated with a lower pectin content and lower levels of pectin-bound Cd. Taken together, our work shows that the NAC102-WAKL11 module regulates cell wall pectin metabolism and Cd binding, thus conferring Cd tolerance in Arabidopsis.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Humans , Arabidopsis/genetics , Arabidopsis/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Cadmium/toxicity , Cadmium/metabolism , Gene Expression Regulation, Plant , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Pectins/metabolism , Cell Wall/metabolism , Plant Roots/metabolism
2.
Front Plant Sci ; 13: 836015, 2022.
Article in English | MEDLINE | ID: mdl-35211145

ABSTRACT

Deoxyribonucleic acid (DNA) methylation is an important epigenetic mark involved in diverse biological processes. Here, we report the critical function of tomato (Solanum lycopersicum) Domains Rearranged Methyltransferase7 (SlDRM7) in plant growth and development, especially in leaf interveinal chlorosis and senescence. Using a hairpin RNA-mediated RNA interference (RNAi), we generated SlDRM7-RNAi lines and observed pleiotropic developmental defects including small and interveinal chlorosis leaves. Combined analyses of whole genome bisulfite sequence (WGBS) and RNA-seq revealed that silencing of SlDRM7 caused alterations in both methylation levels and transcript levels of 289 genes, which are involved in chlorophyll synthesis, photosynthesis, and starch degradation. Furthermore, the photosynthetic capacity decreased in SlDRM7-RNAi lines, consistent with the reduced chlorophyll content and repression of genes involved in chlorophyll biosynthesis, photosystem, and photosynthesis. In contrast, starch granules were highly accumulated in chloroplasts of SlDRM7-RNAi lines and associated with lowered expression of genes in the starch degradation pathway. In addition, SlDRM7 was activated by aging- and dark-induced senescence. Collectively, these results demonstrate that SlDRM7 acts as an epi-regulator to modulate the expression of genes related to starch and chlorophyll metabolism, thereby affecting leaf chlorosis and senescence in tomatoes.

3.
Front Plant Sci ; 12: 796893, 2021.
Article in English | MEDLINE | ID: mdl-35126421

ABSTRACT

The mechanisms associated with the regulation of iron (Fe) homeostasis have been extensively examined, however, epigenetic regulation of these processes remains largely unknown. Here, we report that a naturally occurring epigenetic mutant, Colorless non-ripening (Cnr), displayed increased Fe-deficiency responses compared to its wild-type Ailsa Craig (AC). RNA-sequencing revealed that a total of 947 and 1,432 genes were up-regulated by Fe deficiency in AC and Cnr roots, respectively, while 923 and 1,432 genes were, respectively, down-regulated. Gene ontology analysis of differentially expressed genes showed that genes encoding enzymes, transporters, and transcription factors were preferentially affected by Fe deficiency. Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis revealed differential metabolic responses to Fe deficiency between AC and Cnr. Based on comparative transcriptomic analyses, 24 genes were identified as potential targets of Cnr epimutation, and many of them were found to be implicated in Fe homeostasis. By developing CRISPR/Cas9 genome editing SlSPL-CNR knockout (KO) lines, we found that some Cnr-mediated Fe-deficiency responsive genes showed similar expression patterns between SlSPL-CNR KO plants and the Cnr epimutant. Moreover, both two KO lines displayed Fe-deficiency-induced chlorosis more severe than AC plants. Additionally, the Cnr mutant displayed hypermethylation in the 286-bp epi-mutated region on the SlSPL-CNR promoter, which contributes to repressed expression of SlSPL-CNR when compared with AC plants. However, Fe-deficiency induced no change in DNA methylation both at the 286-bp epi-allele region and the entire region of SlSPL-CNR gene. Taken together, using RNA-sequencing and genetic approaches, we identified Fe-deficiency responsive genes in tomato roots, and demonstrated that SlSPL-CNR is a novel regulator of Fe-deficiency responses in tomato, thereby, paving the way for further functional characterization and regulatory network dissection.

4.
Sci Rep ; 6: 36638, 2016 11 11.
Article in English | MEDLINE | ID: mdl-27833110

ABSTRACT

In this study, we evaluated the sink and source of the surface water along the PRE using a mixing model method with salinity as tracer. The observational data showed that the decreasing of dissolved inorganic nitrogen (DIN) did not closely follow the physical mixing lines of freshwater and modified seawater. In the western part, DIN consumption by phytoplankton and bacteria uptake (ΔDIN)varied from 15.81 µmol L-1 to 88.53 µmol L-1. On the contrary, in the eastern part, ΔDIN varied from -63.66 µmol L-1 to -10.45 µmol L-1. DIN source in the eastern part may be mainly caused by organic matter decomposition, while DIN remove is strongly associated with phytoplankton growth and bacteria consumption. These differential behaviors of the estuary with respect to DIN are largely due to varying degrees of hydrodynamics due to different topography in the two areas. Sensitivity analysis indicated reduction strategies of DIN inputs to coastal waters may improve environment quality in the PRE, due to DIN changes in the freshwater end-member having a determined influence on biological activities (R). Our results indicate that the model may be a valuable way to address the sources and sink of DIN in the river-dominated estuaries.

5.
Ecotoxicology ; 24(7-8): 1498-507, 2015 Oct.
Article in English | MEDLINE | ID: mdl-25854898

ABSTRACT

Organophosphate pesticides (OPs), as a replacement for the organochlorine pesticides, are generally considered non-toxic to plants and algae. Chlorpyrifos and dichlorvos are two OPs used for pest control all over the world. In this study, the dose-response of cyanobacteria Microcystis wesenbergii on OPs exposure and the stimulating effect of OPs with and without phosphorus source were investigated. The results showed that high concentrations of chlorpyrifos and dichlorvos caused significant decrease of chlorophyll a content. The median inhibitory concentrations (EC50) of chlorpyrifos and dichlorvos at 96 h were 15.40 and 261.16 µmol L(-1), respectively. Growth of M. wesenbergii under low concentration of OPs (ranged from 1/10,000 to 1/20 EC50), was increased by 35.85 % (chlorpyrifos) and 41.83 % (dichlorvos) at 120 h, respectively. Correspondingly, the highest enhancement on the maximum quantum yield (F v/F m) was 4.20 % (24 h) and 9.70 % (48 h), respectively. Chlorophyll fluorescence kinetics, known as O-J-I-P transients, showed significant enhancements in the O-J, J-I, and I-P transients under low concentrations of dichlorvos at 144 h, while enhancements of chlorophyll fluorescence kinetics induced by low concentrations of chlorpyrifos were only observed in the J-I transient at 144 h. Significant decreases of chlorophyll content, F v/F m and O-J-I-P transients with OPs as sole phosphorus source were found when they were compared with inorganic phosphate treatments. The results demonstrated an evidently hormetic dose-response of M. wesenbergii to both chlorpyrifos and dichlorvos, where high dose (far beyond environmental concentrations) exposure caused growth inhibition and low dose exposure induced enhancement on physiological processes. The stimulating effect of two OPs on growth of M. wesenbergii was negligible under phosphate limitation.


Subject(s)
Chlorpyrifos/toxicity , Dichlorvos/toxicity , Insecticides/toxicity , Microcystis/drug effects , Water Pollutants, Chemical/toxicity , Biodegradation, Environmental , Chlorophyll/metabolism , Chlorophyll A , Dose-Response Relationship, Drug , Fluorescence , Hormesis , Kinetics , Microcystis/metabolism
6.
Ecotoxicology ; 24(7-8): 1583-92, 2015 Oct.
Article in English | MEDLINE | ID: mdl-25822200

ABSTRACT

Heavy metal pollution in marine fish has become an important worldwide concern, not only because of the threat to fish in general, but also due to human health risks associated with fish consumption. To investigate the occurrence of heavy metals in marine fish species from the South China Sea, 14 fish species were collected along the coastline of Hainan China during the spring of 2012 and examined for species- and tissue-specific accumulation. The median concentrations of Cd, Cr, Cu, Zn, Pb and As in muscle tissue of the examined fish species were not detectable (ND), 2.02, 0.24, 2.64, 0.025, and 1.13 mg kg(-1) wet weight, respectively. Levels of Cu, Zn, Cd and Cr were found to be higher in the liver and gills than in muscle, while Pb was preferentially accumulated in the gills. Differing from other heavy metals, As did not exhibit tissue-specific accumulation. Inter-species differences of heavy metal accumulation were attributed to the different habitat and diet characteristics of marine fish. Human dietary exposure assessment suggested that the amounts of both Cr and As in marine wild fish collected from the sites around Hainan, China were not compliant with the safety standard of less than 79.2 g d(-1) for wild marine fish set by the Joint FAO/WHO Expert Committee on Food Additives. Further research to identify the explicit sources of Cr and As in marine fish from South China Sea should be established.


Subject(s)
Environmental Monitoring , Fishes/metabolism , Food Contamination/analysis , Metals, Heavy/analysis , Seafood/analysis , Water Pollutants, Chemical/analysis , Animals , China , Environmental Exposure , Humans , Risk Assessment , Species Specificity , Tissue Distribution
7.
Environ Res ; 135: 42-7, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25262073

ABSTRACT

Hair has long been recognized as a good biomarker for human exposure to Hg. The mercury concentrations in 14 species of marine fish and hair samples from 177 coastal residents in Hainan, South China Sea were investigated to assess the status of mercury exposure associated with marine fish consumption. Concentrations of total Hg (THg) and methylmercury (MeHg) in the fish muscles were 0.094 ± 0.008 and 0.066 ± 0.006 µg/gww, respectively, which were far below the limit considered safe for consumption (0.5 µg/g). The average THg concentrations in hair of adults (1.02 ± 0.92 µg/g) were lower than the provisional tolerable weekly intake (PTWI) level of 2.2 µg/g. However, 23.7% of children had a hair THg level exceeding the RfD level of 1µg/g, indicating a great risk of Hg exposure to children via fish consumption. The concentration of THg in hair was significantly correlated with fish consumption but not with gender-specific fish intake. With higher fish consumption frequency, the fishermen had significantly elevated hair Hg levels compared to the students and the other general public, who had similar hair THg levels but different fish consumption patterns, indicating the existence of other sources of Hg exposure to the residents of Hainan Island.


Subject(s)
Environmental Exposure/statistics & numerical data , Environmental Monitoring/statistics & numerical data , Fishes/metabolism , Hair/chemistry , Mercury/analysis , Water Pollutants, Chemical/analysis , Analysis of Variance , Animals , China , Environmental Exposure/standards , Food Contamination/analysis , Humans , Islands
8.
Environ Microbiol Rep ; 6(6): 683-95, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25756122

ABSTRACT

We study the metaproteome of the GF/F-prefiltered fraction of a microbial community from Shantou coast summer surface waters using a shotgun proteomic approach. Spectra attributed to the marine Roseobacter clade (MRC), the oligotrophic marine Gammaproteobacteria (OMG) group and Flavobacteria dominated in the microbial community, accounting for 21.0%, 23.2% and 12.7% of all of the detected spectra, respectively, whereas the SAR 92 clade accounted for 50% of the OMG group. The abundance of TonB-dependent receptors (TBDRs) was detected and the majority of TBDRs were attributed to the OMG, whereas a large number of ABC transporters matched to the MRC, which suggests niche separation in the microbial community. Expression of proteorhodopsin and RagB/SusD from Flavobacteria facilitates their attachment and growth on algal-derived organic matter. Taurine and glycine betaine appear to be an important source of carbon and nitrogen for the Rhodobacteraceae and SAR11 cluster. The detection of carbon monoxide dehydrogenase, formate dehydrogenase, O-acetylhomoserine sulfhydrylase and sulfur oxidation protein from the MRC demonstrated that members of the MRC play important roles in coastal ocean biogeochemical cycles. This study provides the first insight into functional processes occurring in microbial communities in coastal waters in the South China Sea.


Subject(s)
Bacteria/genetics , Bacteria/isolation & purification , Bacteria/chemistry , Bacteria/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biodiversity , China , Ecosystem , Oceans and Seas , Phylogeny , Proteomics , Seawater/microbiology
9.
Ecotoxicology ; 20(8): 1780-90, 2011 Nov.
Article in English | MEDLINE | ID: mdl-21735127

ABSTRACT

Anaerobic ammonium oxidizing (anammox) bacterial community structures were investigated in surface (1-2 cm) and lower (20-21 cm) layers of mangrove sediments at sites located immediately to the mangrove trees (S0), 10 m (S1) and 1000 m (S2) away from mangrove trees in a polluted area of the Pearl River Delta. At S0, both 16S rRNA and hydrazine oxidoreductase (HZO) encoding genes of anammox bacteria showed high diversity in lower layer sediments, but they were not detectable in lower layer sediments in mangrove forest. S1 and S2 shared similar anammox bacteria communities in both surface and lower layers, which were quite different from that of S0. At all three locations, higher richness of anammox bacteria was detected in the surface layer than the lower layer; 16S rRNA genes revealed anammox bacteria were composed by four phylogenetic clusters affiliated with the "Scalindua" genus, and one group related to the potential anammox bacteria; while the hzo genes showed that in addition to sequences related to the "Scalindua", sequences affiliated with genera of "Kuenenia", "Brocadia", and "Jettenia" were also detected in mangrove sediments. Furthermore, hzo gene abundances decreased from 36.5 × 10(4) to 11.0 × 10(4) copies/gram dry sediment in lower layer sediments while increased from below detection limit to 31.5 × 10(4) copies/gram dry sediment in lower layer sediments from S0 to S2. The results indicated that anammox bacteria communities might be strongly influenced by mangrove trees. In addition, the correlation analysis showed the redox potential and the molar ratio of ammonium to nitrite in sediments might be important factors affecting the diversity and distribution of anammox bacteria in mangrove sediments.


Subject(s)
Bacteria/genetics , Biota , Geologic Sediments/microbiology , Oxidoreductases/genetics , RNA, Ribosomal, 16S , Trees , China , Hydrazines , Molecular Sequence Data , Nitrites/metabolism , Oxidation-Reduction , Phylogeny , Quaternary Ammonium Compounds/metabolism , Rivers , Water Pollutants , Wetlands
10.
Microbes Environ ; 26(1): 15-22, 2011.
Article in English | MEDLINE | ID: mdl-21487198

ABSTRACT

The community and population dynamics of anammox bacteria in summer (wet) and winter (dry) seasons in estuarial mudflat sediment of the Mai Po Nature Reserve were investigated by 16S rRNA and hydrazine oxidoreductase (hzo) genes. 16S rRNA phylogenetic diversity showed that sequences related to 'Kuenenia' anammox bacteria were presented in summer but not winter while 'Scalindua' anammox bacteria occurred in both seasons and could be divided into six different clusters. Compared to the 16S rRNA genes, the hzo genes revealed a relatively uniform seasonal diversity, with sequences relating to 'Scalindua', 'Anammoxoglobus', and planctomycete KSU-1 found in both seasons. The seasonal specific bacterial groups and diversity based on the 16S rRNA and hzo genes indicated strong seasonal community structures in estuary sediment of this site. Furthermore, the higher abundance of hzo genes in summer than winter indicates clear seasonal population dynamics. Combining the physicochemical characteristics of estuary sediment in the two seasons and their correlations with anammox bacteria community structure, we proposed the strong seasonal dynamics in estuary sediment of Mai Po to be due to the anthropogenic and terrestrial inputs, especially in summer, which brings in freshwater anammox bacteria, such as 'Kuenenia', interacting with the coastal marine anammox bacteria 'Scalindua'.


Subject(s)
Bacteria/isolation & purification , Bacterial Proteins/genetics , Hydrazines/metabolism , Oxidoreductases/genetics , Quaternary Ammonium Compounds/metabolism , RNA, Ribosomal, 16S/genetics , Bacteria/classification , Bacteria/genetics , Bacteria/metabolism , Bacterial Proteins/metabolism , Biodiversity , China , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Geologic Sediments/microbiology , Molecular Sequence Data , Oxidation-Reduction , Oxidoreductases/metabolism , Phylogeny , Seasons
11.
Microb Ecol ; 62(1): 36-47, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21491114

ABSTRACT

Anaerobic ammonium oxidation (anammox) has been recognized as an important process for the global nitrogen cycle. In this study, the occurrence and diversity of anammox bacteria in the deep-sea subsurface sediments of the South China Sea (SCS) were investigated. Results indicated that the anammox bacterial sequences recovered from this habitat by amplifying both 16S rRNA gene and hydrazine oxidoreductase encoding hzo gene were all closely related to the Candidatus Scalindua genus. A total of 96 16S rRNA gene sequences from 346 clones were grouped into five subclusters: two subclusters affiliated with the brodae and arabica species, while three new subclusters named zhenghei-I, -II, and -III showed ≤ 97.4% nucleic acid sequence identity with other known Candidatus Scalindua species. Meanwhile, 88 hzo gene sequences from the sediments also formed five distant subclusters within hzo cluster 1c. Through fluorescent real-time PCR analysis, the abundance of anammox bacteria in deep-sea subsurface sediment was quantified by hzo genes, which ranged from 1.19 × 10(4) to 7.17 × 10(4) copies per gram of dry sediments. Combining all the information from this study, diverse Candidatus Scalindua anammox bacteria were found in the deep-sea subsurface sediments of the SCS, and they could be involved in the nitrogen loss from the fixed inventory in the habitat.


Subject(s)
Bacteria, Anaerobic/genetics , Bacteria, Anaerobic/isolation & purification , Ecosystem , Geologic Sediments/microbiology , Quaternary Ammonium Compounds/metabolism , Seawater/microbiology , Bacteria, Anaerobic/classification , Bacteria, Anaerobic/metabolism , Bacterial Proteins/genetics , Biodiversity , China , Genetic Markers , Geologic Sediments/chemistry , Molecular Sequence Data , Oceans and Seas , Phylogeny , Seawater/chemistry , Species Specificity
12.
Appl Microbiol Biotechnol ; 89(4): 1233-41, 2011 Feb.
Article in English | MEDLINE | ID: mdl-20949269

ABSTRACT

The community structure and diversity of anaerobic ammonium oxidation (anammox) bacteria in the surface sediments of equatorial Pacific were investigated by phylogenic analysis of 16S rRNA and hydrazine oxidoreductase (hzo) genes and PCoA (principal coordinates analysis) statistical analysis. Results indicated that 16S rRNA and hzo sequences in the P2 (off the center of western Pacific warm pool) and P3 (in the eastern equatorial Pacific) sites all belong to the Candidatus "Scalindua", the dominate anammox bacteria in the low-temperature marine environment proved by previous studies. However, in the P1 site (in center of warm pool of western Pacific), large part of 16S rRNA gene sequences formed a separated cluster. Meanwhile, hzo gene sequences from P1 sediment also grouped into a single cluster. PCoA analysis demonstrated that the anammox community structure in the P1 has significant geographical distributional difference from that of P2, P3, and other marine environments based on 16S rRNA and hzo genes. The abundances of anammox bacteria in surface sediments of equatorial Pacific were quantified by q-PCR analysis of hzo genes, which ranged from 3.98 × 10(3) to 1.17 × 10(4) copies g(-1) dry sediments. These results suggested that a special anammox bacteria phylotypes exist in the surface sediment of the western Pacific warm pool, which adapted to the specific habitat and maybe involved in the nitrogen loss process from the fixed inventory in the habitat.


Subject(s)
Ammonia/metabolism , Bacteria/classification , Bacteria/metabolism , Biodiversity , Geologic Sediments/microbiology , Bacteria/genetics , Bacteria/isolation & purification , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Molecular Sequence Data , Oxidation-Reduction , Oxidoreductases/genetics , Pacific Ocean , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
13.
Appl Microbiol Biotechnol ; 88(3): 637-43, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20706834

ABSTRACT

Azo dyes are toxic, highly persistent, and ubiquitously distributed in the environments. The large-scale production and application of azo dyes result in serious environmental pollution of water and sediments. Bacterial azo reduction is an important process for removing this group of contaminants. Recent advances in this area of research reveal that azo reduction by Shewanella strains is coupled to the oxidation of electron donors and linked to the electron transport and energy conservation in the cell membrane. Up to date, several key molecular components involved in this reaction have been identified and the primary electron transportation system has been proposed. These new discoveries on the respiration pathways and electron transfer for bacterial azo reduction has potential biotechnological implications in cleaning up contaminated sites.


Subject(s)
Azo Compounds/metabolism , Coloring Agents/metabolism , Shewanella/metabolism , Soil Pollutants/metabolism , Water Pollutants, Chemical/metabolism , Water Pollutants, Chemical/toxicity , Biodegradation, Environmental , Coloring Agents/toxicity , Electron Transport , Industrial Waste , Oxidation-Reduction , Shewanella/physiology , Soil Pollutants/toxicity
14.
Huan Jing Ke Xue ; 31(4): 1041-6, 2010 Apr.
Article in Chinese | MEDLINE | ID: mdl-20527189

ABSTRACT

A humus-reducing bacterium strain W3 was isolated from the mangrove sediment. Based on the analysis of morphology, physiobiochemical characteristics and 16S rDNA gene sequence, this strain was identified as Shewanella sp. W3. Strain W3 was able to reduce humic with lactate, formate and pyruvate as electron donor and the humic reduction rates to 1 mmol/L AQDS were 96%, 40% and 10% respectively within 48 hours. In addition, the bacteria can grow coupled with the humic reduction. Strain W3 grew to maximal density of 1.77 x 10(8) CFU/mL after complete reduction of 1 mmol/L AQDS. However, the growth of strain W3 was light increase in the control experiment in the absence of electron donor. The optimal initial pH, NaCl concentration, and temperature for strain W3 reducing humic were pH 7-9, 5-30 g/L, and 30-35 degrees C, respectively. Combined experimental results showed that the humic reduction was a biochemical process and strain W3 could conserve energy to support growth from lactate oxidation coupled to humic reduction. It is suggested that humic reduction by Shewanella bacteria may play important roles in biogeochemical circulation of elements and have potential application in the microbial bioremediation to contaminations.


Subject(s)
Geologic Sediments/microbiology , Humic Substances/analysis , Rhizophoraceae/growth & development , Shewanella/isolation & purification , Wetlands , Biodegradation, Environmental , Culture Techniques , Oxidation-Reduction , Shewanella/classification , Shewanella/physiology
15.
J Microbiol Biotechnol ; 19(1): 37-41, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19190406

ABSTRACT

Previous studies have demonstrated that Shewanella decolorationis S12 can grow on the azo compound amaranth as the sole electron acceptor. Thus, to explore the mechanism of energy generation in this metabolism, membranous vesicles (MVs) were prepared and the mechanism of energy generation investigated. The membrane, which was fragmentized during preparation, automatically formed vesicles ranging from 37.5-112.5 nm in diameter under electron micrograph observation. Energy was conserved when coupling the azoreduction by the MVs of an azo compound or Fe(III) as the sole electron acceptor with H2, formate, or lactate as the electron donor. The amaranth reduction by the vesicles was found to be inhibited by specific respiratory inhibitors, including Cu(2+) ions, dicumarol, stigmatellin, and metyrapone, indicating that the azoreduction was indeed a respiration reaction. This finding was further confirmed by the fact that the ATP synthesis was repressed by the ATPase inhibitor N,N'-dicyclohexylcarbodiimide (DCCD). Therefore, this study offers solid evidence of a mechanism of microbial dissimilatory azoreduction on a subcell level.


Subject(s)
Amaranth Dye/metabolism , Shewanella/metabolism , Adenosine Triphosphate/biosynthesis , Anti-Bacterial Agents/pharmacology , Cell Membrane/ultrastructure , Copper/pharmacology , Dicumarol/pharmacology , Dicyclohexylcarbodiimide/metabolism , Electron Transport/drug effects , Enzyme Inhibitors/pharmacology , Ferric Compounds/metabolism , Isotopes , Metyrapone/pharmacology , Oxidation-Reduction , Polyenes/pharmacology , Reducing Agents/metabolism , Shewanella/ultrastructure , Trace Elements , Uncoupling Agents/pharmacology
16.
Appl Microbiol Biotechnol ; 80(3): 517-24, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18651140

ABSTRACT

Shewanella decolorationis S12, a representative dissimilatory azo-reducing bacterium of Shewanella genus, can grow by coupling the oxidation of hydrogen to the reduction of azo compounds as the sole electron acceptor, indicating that an uptake hydrogenase is an important component for electron transfer for azoreduction. For searching to the uptake hydrogenase in the genome of S. decolorationis, two operons, hyd and hya, were cloned and sequenced, which encode periplasmically oriented Fe-only hydrogenase and a Ni-Fe hydrogenase, respectively, according to the homologous comparison with other bacterial hydrogenases. In order to assess the roles of these two enzymes in hydrogen-dependent azoreduction and growth, hyd- and hya-deficient mutants were generated by gene replacement. Hya was found to be required for hydrogen-dependent reduction of azo compound by resting cell suspensions and to be essential for growth with hydrogen as electron donor and azo compound as electron acceptor. Hyd, in contrast, was not. These findings suggest that Hya is an essential respiratory hydrogenase of dissimilatory azoreduction in S. decolorationis.


Subject(s)
Azo Compounds/metabolism , Bacterial Proteins/metabolism , Hydrogen/metabolism , Oxidoreductases/metabolism , Shewanella/enzymology , Bacterial Proteins/genetics , Molecular Sequence Data , Mutation , Operon , Oxidation-Reduction , Oxidoreductases/genetics , Shewanella/genetics , Shewanella/metabolism
17.
J Microbiol Biotechnol ; 17(3): 428-37, 2007 Mar.
Article in English | MEDLINE | ID: mdl-18050946

ABSTRACT

The potential for humic substances to serve as terminal electron acceptors in microbial respiration and the effects of humic substances on microbial azoreduction were investigated. The dissimilatory azoreducing microorganism Shewanella decolorationis S12 was able to conserve energy to support growth from electron transport to humics coupled to the oxidation of various organic substances or H2. Batch experiments suggested that when the concentration of anthraquinone-2-sulfonate (AQS), a humics analog, was lower than 3 mmol/l, azoreduction of strain S12 was accelerated under anaerobic condition. However, there was obvious inhibition to azoreduction when the concentration of the AQS was higher than 5 mmol/l. Another humics analog, anthraquinone-2-sulfonate (AQDS), could still prominently accelerate azoreduction, even when the concentration was up to 12 mmol/l, but the rate of acceleration gradually decreased with the increasing concentration of the AQDS. Toxic experiments revealed that AQS can inhibit growth of strain S12 if the concentration past a critical one, but AQDS had no effect on the metabolism and growth of strain S12 although the concentration was up to 20 mmol/l. These results demonstrated that a low concentration of humic substances not only could serve as the terminal electron acceptors for conserving energy for growth, but also act as redox mediator shuttling electrons for the anaerobic azoreduction by S. decolorationis S12. However, a high concentration of humic substances could inhibit the bacterial azoreduction, resulting on the one hand from the toxic effect on cell metabolism and growth, and on the other hand from competion with azo dyes for electrons as electron acceptor.


Subject(s)
Azo Compounds/metabolism , Coloring Agents/metabolism , Electron Transport , Humic Substances , Shewanella/metabolism , Anaerobiosis , Azo Compounds/chemistry , Industrial Microbiology , Oxidation-Reduction , Shewanella/growth & development
18.
Huan Jing Ke Xue ; 28(6): 1397-403, 2007 Jun.
Article in Chinese | MEDLINE | ID: mdl-17674757

ABSTRACT

A broad-spectrum azo-reducing bacterial strain, AzoR-2, was isolated from a active-sludge of textile-printing wastewater treatment plant and the strain was identified and characterized. This strain was identified as Citrobacter sp. according to its morphological, physiobiochemical characteristics and analysis of its 16S rDNA and beta-lactamase gene sequence. Studies showed that strain AzoR-2 was able to reduce various azo dyes with several organic substances and H2 as electron donor and the electrons for azoreduction came from primary electron donor. The azoreduction by strain AzoR-2 was inhibited strongly by O2. The enzyme system for azoreduction of strain AzoR-2 was located on cellular membrane, suggesting that the microbial azoreduction is linked to electron transport chain. Azoreduction by strain AzoR-2 was occurred in the range of alkaline pH at the temperature range 20 - 40 degrees C with optimum pH 7.5 and 35 degrees C. Azo-reducing Citrobacter bacterium may play important roles in bioremediation of the environment contaminated by azo dyes and in the decolorization of textile-printing wastewater.


Subject(s)
Azo Compounds/metabolism , Citrobacter/isolation & purification , Coloring Agents/metabolism , Waste Disposal, Fluid/methods , Citrobacter/metabolism , Industrial Waste , Oxidation-Reduction , Textile Industry
19.
Wei Sheng Wu Xue Bao ; 47(1): 173-7, 2007 Feb.
Article in Chinese | MEDLINE | ID: mdl-17436648

ABSTRACT

The discovery of Electricigens substantially changed the meaning of Microbial Fuel Cell (MFC) and exhibited a broad prospect for application. This kind microorganism can completely oxidize organic compounds with electrode as sole electron acceptor and then transfer the electrons derived from that oxidation onto the anode of a MFC through electron transport chain. When the electrons transfer from anode to cathode, the current was generated continuously. At same time, they gain energy to support their growth from the electron transport. The biochemical metabolism process was considered as a new type microbiological respiration. Based on the new concept, MFC offered the possibility of efficient treatment waste-water and generation electricity simultaneously, which would fuel the waste-water into a profitable industry in the future. So the application of MFC in the waste-water treatment would be most promising.


Subject(s)
Bacteria/metabolism , Bioelectric Energy Sources , Electricity , Biodegradation, Environmental , Electron Transport , Oxygen Consumption , Waste Disposal, Fluid , Waste Management
20.
Wei Sheng Wu Xue Bao ; 46(4): 591-7, 2006 Aug.
Article in Chinese | MEDLINE | ID: mdl-17037061

ABSTRACT

Under anaerobic conditions, Shewanella cinicaD14(T), Shewanella baltica and Shewane-lla putrefaciens are capable of high-rate azoreduction and humus reduction. The results indicated that at low concentration ( <2 mmol/L) AQS was a accelerator for bacterial azoreduction. However, when the concentration of AQS was more than 5 mmol/L a strong inhibition was occurred. On the other hand, the concentration of AQDS as high as 12 mmol/L the inhibition of azoreduction was still not exhibited, but the effect of acceleration was gradually decreased with the concentration of AQDS increasing (1 mmol/L to 12 mmol/L). 6 azo dyes (Table 1) were tested, all of which had a similar results. These results indicated that the humic substances were not only as a redox mediator during the azoreduction, but also as the competitor for electron from respiration chain. Because the humic substances could be act as the terminal electron acceptor for bacterial anaerobic respiration. AQS and AQDS exhibiting different behaviour on the azoreduction were determined by their standard redox potentials.


Subject(s)
Azo Compounds/chemistry , Azo Compounds/metabolism , Humic Substances , Shewanella/drug effects , Shewanella/metabolism , Anaerobiosis , Anthraquinones/chemistry , Anthraquinones/metabolism , Electron Transport , Oxidation-Reduction
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