Assessing the Ability of Chloroplast and Nuclear DNA Gene Markers to Verify the Geographic Origin of Jatoba (Hymenaea courbaril L.) Timber.

Deforestation-reinforced by illegal logging-is a serious problem in many tropical regions and causes pervasive environmental and economic damage. Existing laws that intend to reduce illegal logging need efficient, fraud resistant control methods. We developed a genetic reference database for Jatoba (Hymenaea courbaril), an important, high value timber species from the Neotropics. The data set can be used for controls on declarations of wood origin. Samples from 308 Hymenaea trees from 12 locations in Brazil, Bolivia, Peru, and French Guiana have been collected and genotyped on 10 nuclear microsatellites (nSSRs), 13 chloroplast SNPs (cpSNP), and 1 chloroplast indel marker. The chloroplast gene markers have been developed using Illumina DNA sequencing. Bayesian cluster analysis divided the individuals based on the nSSRs into 8 genetic groups. Using self-assignment tests, the power of the genetic reference database to judge on declarations on the location has been tested for 3 different assignment methods. We observed a strong genetic differentiation among locations leading to high and reliable self-assignment rates for the locations between 50% to 100% (average of 88%). Although all 3 assignment methods came up with similar mean self-assignment rates, there were differences for some locations linked to the level of genetic diversity, differentiation, and heterozygosity. Our results show that the nuclear and chloroplast gene markers are effective to be used for a genetic certification system and can provide national and international authorities with a robust tool to confirm legality of timber.

Maximising Synergy among Tropical Plant Systematists, Ecologists, and Evolutionary Biologists.

Closer collaboration among ecologists, systematists, and evolutionary biologists working in tropical forests, centred on studies within long-term permanent plots, would be highly beneficial for their respective fields. With a key unifying theme of the importance of vouchered collection and precise identification of species, especially rare ones, we identify four priority areas where improving links between these communities could achieve significant progress in biodiversity and conservation science: (i) increasing the pace of species discovery; (ii) documenting species turnover across space and time; (iii) improving models of ecosystem change; and (iv) understanding the evolutionary assembly of communities and biomes.

Variation in stem mortality rates determines patterns of above-ground biomass in Amazonian forests: implications for dynamic global vegetation models.

Understanding the processes that determine above-ground biomass (AGB) in Amazonian forests is important for predicting the sensitivity of these ecosystems to environmental change and for designing and evaluating dynamic global vegetation models (DGVMs). AGB is determined by inputs from woody productivity [woody net primary productivity (NPP)] and the rate at which carbon is lost through tree mortality. Here, we test whether two direct metrics of tree mortality (the absolute rate of woody biomass loss and the rate of stem mortality) and/or woody NPP, control variation in AGB among 167 plots in intact forest across Amazonia. We then compare these relationships and the observed variation in AGB and woody NPP with the predictions of four DGVMs. The observations show that stem mortality rates, rather than absolute rates of woody biomass loss, are the most important predictor of AGB, which is consistent with the importance of stand size structure for determining spatial variation in AGB. The relationship between stem mortality rates and AGB varies among different regions of Amazonia, indicating that variation in wood density and height/diameter relationships also influences AGB. In contrast to previous findings, we find that woody NPP is not correlated with stem mortality rates and is weakly positively correlated with AGB. Across the four models, basin-wide average AGB is similar to the mean of the observations. However, the models consistently overestimate woody NPP and poorly represent the spatial patterns of both AGB and woody NPP estimated using plot data. In marked contrast to the observations, DGVMs typically show strong positive relationships between woody NPP and AGB. Resolving these differences will require incorporating forest size structure, mechanistic models of stem mortality and variation in functional composition in DGVMs.

Fast demographic traits promote high diversification rates of Amazonian trees.

The Amazon rain forest sustains the world's highest tree diversity, but it remains unclear why some clades of trees are hyperdiverse, whereas others are not. Using dated phylogenies, estimates of current species richness and trait and demographic data from a large network of forest plots, we show that fast demographic traits--short turnover times--are associated with high diversification rates across 51 clades of canopy trees. This relationship is robust to assuming that diversification rates are either constant or decline over time, and occurs in a wide range of Neotropical tree lineages. This finding reveals the crucial role of intrinsic, ecological variation among clades for understanding the origin of the remarkable diversity of Amazonian trees and forests.

Drought-mortality relationships for tropical forests.

*The rich ecology of tropical forests is intimately tied to their moisture status. Multi-site syntheses can provide a macro-scale view of these linkages and their susceptibility to changing climates. Here, we report pan-tropical and regional-scale analyses of tree vulnerability to drought. *We assembled available data on tropical forest tree stem mortality before, during, and after recent drought events, from 119 monitoring plots in 10 countries concentrated in Amazonia and Borneo. *In most sites, larger trees are disproportionately at risk. At least within Amazonia, low wood density trees are also at greater risk of drought-associated mortality, independent of size. For comparable drought intensities, trees in Borneo are more vulnerable than trees in the Amazon. There is some evidence for lagged impacts of drought, with mortality rates remaining elevated 2 yr after the meteorological event is over. *These findings indicate that repeated droughts would shift the functional composition of tropical forests toward smaller, denser-wooded trees. At very high drought intensities, the linear relationship between tree mortality and moisture stress apparently breaks down, suggesting the existence of moisture stress thresholds beyond which some tropical forests would suffer catastrophic tree mortality.

Análisis de la composición florística de los bosques de Jenaro Herrera, Loreto, Perú / Analysis of the floristic composition of the forests of Jenaro Herrera, Loreto, Peru

La composición florística de 17 parcelas (0,5 - 2 ha) de Jenaro Herrera, Loreto, Perú fue analizada utilizando el método multivariado de agrupamiento por promedio aritmético de grupos de pares no ponderados (UPGMA). Nueve grupos florísticos fueron reportados y correspondieron a los siguientes tipos de bosque descritos anteriormente en la zona: 1) bosque ribereño, un grupo; 2) bosque latifoliado de aguas negras, dos grupos; 3) bosque de arena blanca, dos grupos(más un grupo con parcela que incluye parte de otro tipo de bosque); 4) bosque de terraza, un grupo; 5) bosque de palmeras de aguas negras, un grupo; y 6) bosque de palmeras de terraza baja, un grupo. Problemas taxonómicos en el nivel de especies fueron minimizados con la remoción de las especies raras.

The floristic composition of 17 plots (0,5 - 2 ha) of Jenaro Herrera, Loreto, Peru were analyzed using the unweighted pair group method with arithmetic mean (UPGMA). Nine floristic groups were reported corresponding to the following types of forests described in the study area before: 1) riverine forest -one group, 2) black water broad leaf forest -two groups, 3) white sand forest -two groups (plus one group with a plot including part of another type of forest), 4) terrace forest -one group, 5) black water palm forest -one group, and 6) low terrace palm forest -one group. Taxonomic problems were detected in species level; however, these were minimized when rare species were removed.

Estimation of biomass and carbon stocks: the case of the Atlantic Forest / Estimativas de biomassa e estoque de carbono: o caso da Mata Atlântica

The main objective of this paper is to present and discuss the best methods to estimate live above ground biomass in the Atlantic Forest. The methods presented and conclusions are the products of a workshop entitled "Estimation of Biomass and Carbon Stocks: the Case of Atlantic Rain Forest". Aboveground biomass (AGB) in tropical forests is mainly contained in trees. Tree biomass is a function of wood volume, obtained from the diameter and height, architecture and wood density (dry weight per unit volume of fresh wood). It can be quantified by the direct (destructive) or indirect method where the biomass quantification is estimated using mathematical models. The allometric model can be site specific when elaborated to a particular ecosystem or general that can be used in different sites. For the Atlantic Forest, despite the importance of it, there are only two direct measurements of tree biomass, resulting in allometric models specific for this ecosystem. To select one or other of the available models in the literature to estimate AGB it is necessary take into account what is the main question to be answered and the ease with which it is possible to measure the independent variables in the model. Models that present more accurate estimates should be preferred. However, more simple models...

O principal objetivo deste artigo é apresentar e discutir a melhor forma para estimar a biomassa viva acima do solo (BVS) na Mata Atlântica. A biomassa viva acima do solo em florestas tropicais esta contida principalmente nas árvores. A biomassa das árvores é uma função do seu volume de madeira, obtido do diâmetro e da altura, de sua arquitetura e da densidade de sua madeira (peso seco por unidade de volume fresco). Ela pode ser quantificada pelo método direto (destrutivo) ou pelo método indireto onde a quantificação da biomassa é feita através de modelos matemáticos. Os modelos alométricos podem ser específicos para um determinado local, quando elaborado para um ecossistema particular, ou gerais, que podem ser utilizados em para estimar a biomassa em diferentes locais. Para a Mata Atlântica, a despeito de sua importância, existem somente duas medidas diretas de biomassa de árvores, que resultaram em modelos alométricos específicos para essas florestas. Para selecionar um ou outro modelo alométrico para estimar BVS, disponível na literatura, é necessário levar em conta o a questão a ser respondida e a facilidade com a qual é possível medir as variáveis independentes do modelo. Preferencialmente, deve-se utilizar modelos...