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1.
Colloids Surf B Biointerfaces ; 145: 617-625, 2016 Sep 01.
Article in English | MEDLINE | ID: mdl-27288816

ABSTRACT

Microbial adhesion to natural and synthetic materials surfaces is a key issue e.g. in food industry, sewage treatment and most importantly in the biomedical field. The current development and progress in nanoscale structuring of materials surfaces to control microbial adhesion requires an advanced understanding of the microbe-material-interaction. This study aimed to investigate the nanostructure of the microbe-material-interface and link it to microbial adhesion kinetics as function of titanium surface nanoroughness to gain new insight into controlling microbial adhesion via materials' surface nanoroughness. Adhesion of Escherichia coli and Staphylococcus aureus was statistically significantly reduced (p≤0.05) by 55.6 % and 40.5 %, respectively, on physical vapor deposited titanium thin films with a nanoroughness of 6nm and the lowest surface peak density compared to 2nm with the highest surface peak density. Cross-sectioning of the microbial cells with a focused ion beam (FIB) and SEM imaging provided for the first time direct insight into the titanium-microbe-interface. High resolution SEM micrographs gave evidence that the surface peaks are the loci of initial contact between the microbial cells and the material's surface. In a qualitative model we propose that the initial microbial adhesion on nanorough surfaces is controlled by the titanium surface peak density via nano adhesion points. This new understanding will help towards the design of materials surfaces for controlling microbial adhesion.


Subject(s)
Bacterial Adhesion/drug effects , Escherichia coli/drug effects , Nanostructures/chemistry , Staphylococcus aureus/drug effects , Titanium/pharmacology , Analysis of Variance , Escherichia coli/ultrastructure , Microscopy, Atomic Force , Nanostructures/ultrastructure , Staphylococcus aureus/ultrastructure , Surface Properties
2.
Proc Natl Acad Sci U S A ; 113(20): 5604-9, 2016 May 17.
Article in English | MEDLINE | ID: mdl-27140609

ABSTRACT

Electron tomography is an increasingly powerful method to study the detailed architecture of macromolecular complexes or cellular structures. Applied to amyloid deposits formed in a cell culture model of systemic amyloid A amyloidosis, we could determine the structural morphology of the fibrils directly in the deposit. The deposited fibrils are arranged in different networks, and depending on the relative fibril orientation, we can distinguish between fibril meshworks, fibril bundles, and amyloid stars. These networks are frequently infiltrated by vesicular lipid inclusions that may originate from the death of the amyloid-forming cells. Our data support the role of nonfibril components for constructing fibril deposits and provide structural views of different types of lipid-fibril interactions.


Subject(s)
Amyloid/chemistry , Electron Microscope Tomography/methods , Lipids/chemistry , Amyloid/ultrastructure , Animals , Cells, Cultured , Female , Lipid Bilayers/chemistry , Mice , Serum Amyloid A Protein/chemistry
3.
Angew Chem Int Ed Engl ; 55(16): 5081-4, 2016 Apr 11.
Article in English | MEDLINE | ID: mdl-26970534

ABSTRACT

N-terminal truncation and pyroglutamyl (pE) formation are naturally occurring chemical modifications of the Aß peptide in Alzheimer's disease. We show herein that these two modifications significantly reduce the fibril length and the transition midpoint of thermal unfolding of the fibrils, but they do not substantially perturb the fibrillary peptide conformation. This observation implies that the N terminus of the unmodified peptide protects Aß fibrils against mechanical stress and fragmentation and explains the high propensity of pE-modified peptides to form small and particularly toxic aggregates.


Subject(s)
Amyloid beta-Peptides/chemistry , Pyrrolidonecarboxylic Acid/chemistry , Amino Acid Sequence , Microscopy, Electron, Transmission , Sequence Homology, Amino Acid
4.
Amyloid ; 23(2): 76-85, 2016 Jun.
Article in English | MEDLINE | ID: mdl-26972581

ABSTRACT

OBJECTIVES: The detailed structure of brain-derived Aß amyloid fibrils is unknown. To approach this issue, we investigate the molecular architecture of Aß(1-40) fibrils grown in either human cerebrospinal fluid solution, in chemically simple phosphate buffer in vitro or extracted from a cell culture model of Aß amyloid plaque formation. METHODS: We have used hydrogen-deuterium exchange (HX) combined with nuclear magnetic resonance, transmission electron microscopy, seeding experiments both in vitro and in cell culture as well as several other spectroscopic measurements to compare the morphology and residue-specific conformation of these different Aß fibrils. RESULTS AND CONCLUSIONS: Our data reveal that, despite considerable variations in morphology, the spectroscopic properties and the pattern of slowly exchanging backbone amides are closely similar in the fibrils investigated. This finding implies that a fundamentally conserved molecular architecture of Aß peptide fold is common to Aß fibrils.


Subject(s)
Amyloid beta-Peptides/chemistry , Amyloid/chemistry , Models, Biological , Peptide Fragments/chemistry , Amyloid/cerebrospinal fluid , Amyloid beta-Peptides/cerebrospinal fluid , Buffers , Cell Line , Conserved Sequence , Deuterium Exchange Measurement , Humans , Nuclear Magnetic Resonance, Biomolecular , Peptide Fragments/cerebrospinal fluid , Phosphates/cerebrospinal fluid , Phosphates/chemistry , Plaque, Amyloid/chemistry , Protein Conformation , Protein Folding , Solutions
5.
Int J Med Microbiol ; 306(1): 59-68, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26679571

ABSTRACT

Allergies are an increasing issue in human health and can, eventually, cause severe anaphylactic shock. Aspergillus fumigatus and Candida albicans are leading causes of life-threatening invasive fungal infections in immunocompromised patients, but can also cause severe allergic responses in otherwise healthy individuals. The glycolytic enzyme enolase is known as a major allergen despite its function in intracellular metabolism. Therefore, its presentation on surfaces of different fungal species was investigated by using antibodies raised against recombinant enolases from A. fumigatus and C. albicans. Examination of antibody specificity revealed cross-reactivity to cell-free extracts from Aspergillus terreus, Aspergillus flavus, Aspergillus nidulans and Candida glabrata, but not against any of the three human enolases. Antibody specificity was further confirmed by hybridization with other recombinant fungal enolases, where the antibodies recognized different subsets of fungal enolases. When surface presentation of enolase was tested on intact fungal cells, a positive staining was obtained with those antibodies that also recognized the enzyme from the respective cell-free extract. This implies a general surface presentation of this glycolytic enzyme among fungal species and provides hints for its predominant recognition as an allergen. Additionally, A. fumigatus and C. albicans enolase bound to human plasminogen, which remained accessible for the plasminogen activator uPA. This implies a potential role of enolase in the invasion and dissemination process during fungal infections.


Subject(s)
Allergens/analysis , Aspergillus/enzymology , Candida/enzymology , Carrier Proteins/analysis , Membrane Proteins/analysis , Phosphopyruvate Hydratase/analysis , Animals , Antibodies, Fungal/metabolism , Cross Reactions , Epitopes/analysis , Host-Pathogen Interactions , Humans , Mice , Plasminogen/metabolism , Protein Binding , Virulence Factors/analysis
6.
J Nat Prod ; 77(12): 2658-63, 2014 Dec 26.
Article in English | MEDLINE | ID: mdl-25420175

ABSTRACT

A stereaceous basidiomycete was investigated with regard to its capacity to produce yellow pigments after physical injury of the mycelium. Two pigments were isolated from mycelial extracts, and their structures were elucidated by ESIMS and one- and two-dimensional NMR methods. The structures were identified as the previously undescribed polyenes (3Z,5E,7E,9E,11E,13Z,15E,17E)-18-methyl-19-oxoicosa-3,5,7,9,11,13,15,17-octaenoic acid (1) and (3E,5Z,7E,9E,11E,13E,15Z,17E,19E)-20-methyl-21-oxodocosa-3,5,7,9,11,13,15,17,19-nonaenoic acid (2). Stable-isotope feeding with [1-(13)C]acetate and l-[methyl-(13)C]methionine demonstrated a polyketide backbone and that the introduction of the sole methyl branch is most likely S-adenosyl-l-methionine-dependent. Dose-dependent inhibition of Drosophila melanogaster larval development was observed with both polyenes in concentrations between 12.5 and 100 µM. GI50 values for 1 and 2 against HUVEC (K-562 cells) were 71.6 and 17.4 µM (15.4 and 1.1 µM), respectively, whereas CC50 values for HeLa cells were virtually identical (44.1 and 45.1 µM).


Subject(s)
Basidiomycota/chemistry , Polyenes/metabolism , Animals , Basidiomycota/pathogenicity , Dose-Response Relationship, Drug , Drosophila melanogaster/drug effects , Electron Spin Resonance Spectroscopy , Humans , K562 Cells , Larva/drug effects , Methionine/metabolism , Molecular Structure , Pigments, Biological/biosynthesis , Pigments, Biological/chemistry , Polyenes/chemistry , S-Adenosylmethionine/pharmacology , Stereoisomerism
7.
ACS Nano ; 8(11): 11042-52, 2014 Nov 25.
Article in English | MEDLINE | ID: mdl-25337989

ABSTRACT

Amyloid oligomers are nonfibrillar polypeptide aggregates linked to diseases, such as Alzheimer's and Parkinson's. Here we show that these aggregates possess a compact, quasi-crystalline architecture that presents significant nanoscale regularity. The amyloid oligomers are dynamic assemblies and are able to release their individual subunits. The small oligomeric size and spheroid shape confer diffusible characteristics, electrophoretic mobility, and the ability to enter hydrated gel matrices or cells. We finally showed that the amyloid oligomers can be labeled with both fluorescence agents and iron oxide nanoparticles and can target macrophage cells. Oligomer amyloids may provide a new biological nanomaterial for improved targeting, drug release, and medical imaging.


Subject(s)
Amyloid/chemistry , Biopolymers/chemistry , Nanoparticles , Microscopy, Electron, Transmission , Nuclear Magnetic Resonance, Biomolecular , Protein Conformation
8.
Acta Neuropathol Commun ; 2: 43, 2014 Apr 11.
Article in English | MEDLINE | ID: mdl-24725347

ABSTRACT

INTRODUCTION: The self-assembly of Aß peptides into a range of conformationally heterogeneous amyloid states represents a fundamental event in Alzheimer's disease. Within these structures oligomeric intermediates are considered to be particularly pathogenic. To test this hypothesis we have used a conformational targeting approach where particular conformational states, such as oligomers or fibrils, are recognized in vivo by state-specific antibody fragments. RESULTS: We show that oligomer targeting with the KW1 antibody fragment, but not fibril targeting with the B10 antibody fragment, affects toxicity in Aß-expressing Drosophila melanogaster. The effect of KW1 is observed to occur selectively with flies expressing Aß(1-40) and not with those expressing Aß(1-42) or the arctic variant of Aß(1-42) This finding is consistent with the binding preference of KW1 for Aß(1-40) oligomers that has been established in vitro. Strikingly, and in contrast to the previously demonstrated in vitro ability of this antibody fragment to block oligomeric toxicity in long-term potentiation measurements, KW1 promotes toxicity in the flies rather than preventing it. This result shows the crucial importance of the environment in determining the influence of antibody binding on the nature and consequences of the protein misfolding and aggregation. CONCLUSIONS: While our data support to the pathological relevance of oligomers, they highlight the issues to be addressed when developing inhibitory strategies that aim to neutralize these states by means of antagonistic binding agents.


Subject(s)
Amyloid beta-Peptides/immunology , Amyloid beta-Peptides/metabolism , Antibodies/therapeutic use , Peptide Fragments/immunology , Peptide Fragments/metabolism , Amino Acid Sequence , Amyloid beta-Peptides/genetics , Amyloid beta-Peptides/pharmacology , Animals , Animals, Genetically Modified , Antibodies/chemistry , Antibodies/genetics , Antibodies/pharmacology , Cell Line, Tumor , Disease Models, Animal , Drosophila Proteins/genetics , Drosophila melanogaster , Eye/metabolism , Eye/ultrastructure , Hippocampus/drug effects , Hippocampus/physiology , Humans , Long-Term Potentiation/drug effects , Long-Term Potentiation/genetics , Mice , Mice, Inbred C57BL , Neuroblastoma/pathology , Neurotoxicity Syndromes/drug therapy , Neurotoxicity Syndromes/etiology , Neurotoxicity Syndromes/physiopathology , Peptide Fragments/genetics , Peptide Fragments/pharmacology , Protein Aggregation, Pathological , Protein Binding/drug effects , Protein Conformation
9.
Microb Cell Fact ; 12: 116, 2013 Nov 21.
Article in English | MEDLINE | ID: mdl-24261588

ABSTRACT

BACKGROUND: Norleucine and norvaline belong to a group of non-canonical amino acids which are synthesized as byproducts in the branched chain amino acid metabolism of Escherichia coli. The earlier observed misincorporation of these rare amino acids into recombinant proteins has attracted increasing attention due to the rising use of protein based biopharmaceuticals in clinical application. Experimental data revealed pyruvate overflow inducing conditions, which typically occur in oxygen limited zones of large-scale fermentations as a major reason leading to norvaline and norleucine synthesis during E. coli cultivation. Previous approaches to suppress misincorporation of norleucine and norvaline considered growth media supplementation with the relevant canonical isostructural compounds, but no research was performed on the impact of the overflow metabolism related trace elements molybdenum, nickel and selenium. These elements form essential parts of the formate hydrogen lyase (FHL) metalloprotein complex, which is a key enzyme of anaerobic pyruvate metabolism in E. coli and could therefore represent a crucial connection to the pyruvate accumulation associated biosynthesis of rare amino acids. RESULTS: In this study, the trace element associated response of recombinant antibody producing E. coli to oxygen limitation at high glucose concentration with a special focus on non-canonical amino acids was analysed. During fed-batch cultivation with provoked oxygen limitation and glucose excess norleucine and norvaline were only accumulated in the absence of molybdenum, nickel and selenium. In contrast, the trace element supplemented stress fermentation showed significantly reduced concentrations of these rare amino acids and the major signature fermentation product formate, supporting the correlation between a functional formate hydrogen lyase complex and low unspecific amino acid synthesis under oxygen limitation at high glucose concentration. CONCLUSIONS: The formation of norleucine and norvaline by recombinant E. coli during cultivation with provoked oxygen limitation and glucose excess can be reduced to levels at the detection limit by adding the trace elements molybdenum, selenium and nickel to the fermentation medium. Even under the metabolic burden during induction phase the physiologically available concentrations of non-canonical amino acids remained low. Since our results allow facile process changes that can be easily implemented to avoid the undesirable accumulation of norleucine and norvaline, we consider this study highly interesting for improved process development in E. coli based recombinant drug production and the future development of possible mechanisms to reduce misincorporation events into protein based biopharmaceuticals.


Subject(s)
Glucose/metabolism , Norleucine/metabolism , Oxygen/metabolism , Trace Elements/metabolism , Valine/analogs & derivatives , Amino Acids , Escherichia coli/growth & development , Escherichia coli/metabolism , Fermentation , Norleucine/biosynthesis , Valine/biosynthesis , Valine/metabolism
10.
Amino Acids ; 44(4): 1225-31, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23306451

ABSTRACT

In this study, a precise and reliable ultra-high performance liquid chromatography (UHPLC) method for the simultaneous determination of non-canonical (norvaline and norleucine) and standard amino acids (aspartic acid, glutamic acid, serine, histidine, glycine, threonine, arginine, tyrosine, methionine, valine, phenylalanine, isoleucine, leucine) in biopharmaceutical-related fermentation processes was established. After pre-column derivatization with ortho-phthaldialdehyde and 2-mercaptoethanol, the derivatives were separated on a sub-2 µm particle C18 reverse-phase column. Identification and quantification of amino acids were carried out by fluorescence detection. To test method feasibility on standard HPLC instruments, the assay was properly transferred to a core-shell particle C18 reverse-phase column. The limits of detection showed excellent sensitivity by values from 0.06 to 0.17 pmol per injection and limits of quantification between 0.19 and 0.89 pmol. In the present study, the newly established UHPLC method was applied to a recombinant antibody Escherichia coli fermentation process for the analysis of total free amino acids. We were able to specifically detect and quantify the unfavorable amino acids in such complex samples. Since we observed trace amounts of norvaline and norleucine during all fermentation phases, an obligatory process monitoring should be considered to improve quality of recombinant protein drugs in future.


Subject(s)
Antibodies/metabolism , Chromatography, High Pressure Liquid/methods , Norleucine/analysis , Valine/analogs & derivatives , Antibodies/genetics , Escherichia coli/chemistry , Escherichia coli/genetics , Fermentation , Industrial Microbiology , Norleucine/metabolism , Valine/analysis , Valine/metabolism
11.
Proc Natl Acad Sci U S A ; 109(31): 12503-8, 2012 Jul 31.
Article in English | MEDLINE | ID: mdl-22814377

ABSTRACT

Oligomers are intermediates of the ß-amyloid (Aß) peptide fibrillogenic pathway and are putative pathogenic culprits in Alzheimer's disease (AD). Here we report the biotechnological generation and biochemical characterization of an oligomer-specific antibody fragment, KW1. KW1 not only discriminates between oligomers and other Aß conformations, such as fibrils or disaggregated peptide; it also differentiates between different types of Aß oligomers, such as those formed by Aß (1-40) and Aß (1-42) peptide. This high selectivity of binding contrasts sharply with many other conformational antibodies that interact with a large number of structurally analogous but sequentially different antigens. X-ray crystallography, NMR spectroscopy, and peptide array measurements imply that KW1 recognizes oligomers through a hydrophobic and significantly aromatic surface motif that includes Aß residues 18-20. KW1-positive oligomers occur in human AD brain samples and induce synaptic dysfunctions in living brain tissues. Bivalent KW1 potently neutralizes this effect and interferes with Aß assembly. By altering a specific step of the fibrillogenic cascade, it prevents the formation of mature Aß fibrils and induces the accumulation of nonfibrillar aggregates. Our data illuminate significant mechanistic differences in oligomeric and fibril recognition and suggest the considerable potential of KW1 in future studies to detect or inhibit specific types of Aß conformers.


Subject(s)
Amyloid beta-Peptides/chemistry , Peptide Fragments/chemistry , Protein Multimerization , Amino Acid Motifs , Antibodies, Monoclonal , Crystallography, X-Ray , Humans , Nuclear Magnetic Resonance, Biomolecular , Protein Structure, Quaternary
12.
J Biotechnol ; 160(1-2): 64-71, 2012 Jul 31.
Article in English | MEDLINE | ID: mdl-22306112

ABSTRACT

The genome of the fungal model organism Aspergillus nidulans harbors nearly 30 polyketide synthase genes, yet the majority of these genes remain silent in the absence of particular stimuli. In this study, environmental conditions such as low specific microbial growth rate as well as nitrate, orthophosphate and glucose limitations were simulated under a continuous cultivation regime to induce the expression of silent polyketide synthase genes. In addition to offline and online bioprocess parameters, the physiological equilibrium was defined at the transcript level in terms of indicator gene expression. The different cultivation parameters resulted in a differential expression of two polyketide synthase genes coding for the biosynthesis of a variety of phenolic compounds, such as orsellinic acid, lecanoric acid, emodins, chrysophanol, shamixanthone, and sanghaspirodin. Further investigation of the metabolome revealed the formation of a novel prenylated benzophenone derivative designated as pre-shamixanthone. Our data indicate that employing chemostat fermentations in combination with genome mining, transcriptome analysis and metabolic profiling represents a valuable approach for triggering cryptic biosynthetic pathways.


Subject(s)
Aspergillus nidulans/genetics , Bioreactors/microbiology , Multigene Family , Polyketide Synthases/genetics , Aspergillus nidulans/enzymology , Aspergillus nidulans/metabolism , Benzophenones/metabolism , Cell Culture Techniques , Gene Expression Profiling/methods , Gene Expression Regulation, Fungal , Genome, Fungal , Metabolome/genetics , Metabolomics/methods , Polyketide Synthases/biosynthesis , Polyketide Synthases/metabolism , Polyketides/metabolism , Systems Biology , Transcriptome
14.
Biochem Biophys Res Commun ; 409(3): 385-8, 2011 Jun 10.
Article in English | MEDLINE | ID: mdl-21575606

ABSTRACT

The oligomerization of Aß peptide into amyloid fibrils is a hallmark of Alzheimer's disease. Due to its biological relevance, phosphate is the most commonly used buffer system for studying the formation of Aß and other amyloid fibrils. Investigation into the characteristics and formation of amyloid fibrils frequently relies upon material formed in vitro, predominantly in phosphate buffers. Herein, we examine the effects on the fibrillation and oligomerization mechanism of Aß peptide that occur due solely to the influence of phosphate buffer. We reveal that significant differences in amyloid fibrillation are observed due to fibrillation being initiated in phosphate or HEPES buffer (at physiological pH and temperature). Except for the differing buffer ions, all experimental parameters were kept constant. Fibril formation was assessed using fluorescently monitored kinetic studies, microscopy, X-ray fiber diffraction and infrared and nuclear magnetic resonance spectroscopies. Based on this set up, we herein reveal profound effects on the mechanism and speed of Aß fibrillation. The three histidine residues at positions 6, 13 and 14 of Aß(1-40) are instrumental in these mechanistic changes. We conclude that buffer plays a more significant role in fibril formation than has been generally acknowledged.


Subject(s)
Alzheimer Disease/metabolism , Amyloid beta-Peptides/chemistry , Amyloid/chemistry , HEPES/chemistry , Peptide Fragments/chemistry , Phosphates/chemistry , Buffers , Histidine/chemistry , Humans
15.
J Mol Biol ; 408(3): 529-40, 2011 May 06.
Article in English | MEDLINE | ID: mdl-21376731

ABSTRACT

Amyloid immunotherapy has led to the rise of antibodies, which target amyloid fibrils or structural precursors of fibrils, based on their specific conformational properties. Recently, we reported the biotechnological generation of the B10 antibody fragment, which provides conformation-specific binding to amyloid fibrils. B10 strongly interacts with fibrils from Alzheimer's ß amyloid (Aß) peptide, while disaggregated Aß peptide or Aß oligomers are not explicitly recognized. B10 also enables poly-amyloid-specific binding and recognizes amyloid fibrils derived from different types of amyloidosis or different polypeptide chains. Based on our current data, however, we find that B10 does not recognize all tested amyloid fibrils and amyloid tissue deposits. It also does not specifically interact with intrinsically unfolded polypeptide chains or globular proteins even if the latter encompass high ß-sheet content or ß-solenoid domains. By contrast, B10 binds amyloid fibrils from d-amino acid or l-amino acid peptides and non-proteinaceous biopolymers with highly regular and anionic surface properties, such as heparin and DNA. These data establish that B10 binding does not depend on an amyloid-specific or protein-specific backbone structure. Instead, it involves the recognition of a highly regular and anionic surface pattern. This specificity mechanism is conserved in nature and occurs also within a group of natural amyloid receptors from the innate immune system, the pattern recognition receptors. Our data illuminate the structural diversity of naturally occurring amyloid scaffolds and enable the discrimination of distinct fibril populations in vitro and within diseased tissues.


Subject(s)
Amyloid/chemistry , Amyloid/immunology , Amyloid/metabolism , Amyloid/ultrastructure , Brain/pathology , Histocytochemistry , Humans , Immunoglobulin Fragments/metabolism , Microscopy, Electron, Transmission , Models, Molecular , Protein Binding
16.
J Mol Biol ; 405(2): 341-8, 2011 Jan 14.
Article in English | MEDLINE | ID: mdl-21059358

ABSTRACT

Amyloid fibrils are naturally occurring polypeptide scaffolds with considerable importance for human health and disease. These supermolecular assemblies are ß-sheet rich and characterized by a high structural order. Clinical diagnosis and emerging therapeutic strategies of amyloid-dependent diseases, such as Alzheimer's, rely on the specific recognition of amyloid structures by other molecules. Recently, we generated the B10 antibody fragment, which selectively binds to Alzheimer's Aß(1-40) amyloid fibrils but does not explicitly recognize other protein conformers, such as oligomers and disaggregated Aß peptide. B10 presents poly-amyloid specific binding and interacts with fibrillar structures consisting of different polypeptide chains. To determine the molecular basis behind its specificity, we have analyzed the molecular properties of B10 with a battery of biochemical and biophysical techniques, ranging from X-ray crystallography to chemical modification studies. We find that fibril recognition depends on positively charged residues within the B10 antigen binding site. Mutation of these basic residues into alanine potently impairs fibril binding, and reduced B10-fibril interactions are also observed when the fibril carboxyl groups are covalently masked by a chemical modification approach. These data imply that the B10 conformational specificity for amyloid fibrils depends upon specific electrostatic interactions with an acidic moiety, which is common to different amyloid fibrils.


Subject(s)
Amyloid beta-Peptides/immunology , Amyloid beta-Peptides/metabolism , Amyloid/immunology , Amyloid/metabolism , Antibodies/immunology , Antibodies/metabolism , Static Electricity , Amino Acid Sequence , Amyloid/chemistry , Amyloid beta-Peptides/chemistry , Antibodies/chemistry , Complementarity Determining Regions/chemistry , Complementarity Determining Regions/metabolism , Crystallography, X-Ray , Humans , Molecular Sequence Data , Protein Binding , Protein Conformation
17.
Eukaryot Cell ; 10(1): 98-109, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21097664

ABSTRACT

The cell wall of the human-pathogenic fungus Candida albicans is a robust but also dynamic structure which mediates adaptation to changing environmental conditions during infection. Sap9 and Sap10 are cell surface-associated proteases which function in C. albicans cell wall integrity and interaction with human epithelial cells and neutrophils. In this study, we have analyzed the enzymatic properties of Sap9 and Sap10 and investigated whether these proteases cleave proteins on the fungal cell surface. We show that Sap9 and Sap10, in contrast to other aspartic proteases, exhibit a near-neutral pH optimum of proteolytic activity and prefer the processing of peptides containing basic or dibasic residues. However, both proteases also cleaved at nonbasic sites, and not all tested peptides with dibasic residues were processed. By digesting isolated cell walls with Sap9 or Sap10, we identified the covalently linked cell wall proteins (CWPs) Cht2, Ywp1, Als2, Rhd3, Rbt5, Ecm33, and Pga4 as in vitro protease substrates. Proteolytic cleavage of the chitinase Cht2 and the glucan-cross-linking protein Pir1 by Sap9 was verified using hemagglutinin (HA) epitope-tagged versions of both proteins. Deletion of the SAP9 and SAP10 genes resulted in a reduction of cell-associated chitinase activity similar to that upon deletion of CHT2, suggesting a direct influence of Sap9 and Sap10 on Cht2 function. In contrast, cell surface changes elicited by SAP9 and SAP10 deletion had no major impact on the phagocytosis and killing of C. albicans by human macrophages. We propose that Sap9 and Sap10 influence distinct cell wall functions by proteolytic cleavage of covalently linked cell wall proteins.


Subject(s)
Aspartic Acid Endopeptidases/metabolism , Candida albicans/enzymology , Cell Wall/metabolism , Fungal Proteins/metabolism , Amino Acid Sequence , Aspartic Acid Endopeptidases/chemistry , Aspartic Acid Endopeptidases/genetics , Candida albicans/pathogenicity , Chitinases/chemistry , Chitinases/metabolism , Computer Simulation , Enzyme Assays , Fungal Proteins/chemistry , Fungal Proteins/genetics , Humans , Hydrogen-Ion Concentration , Macrophages/microbiology , Macrophages/physiology , Models, Molecular , Mutation , Pepstatins/pharmacology , Phagocytosis , Proteome/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Substrate Specificity , Tumor Cells, Cultured
18.
Appl Environ Microbiol ; 76(24): 8143-9, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20952652

ABSTRACT

Filamentous fungi produce numerous natural products that constitute a consistent source of potential drug leads, yet it seems that the majority of natural products are overlooked since most biosynthesis gene clusters are silent under standard cultivation conditions. Screening secondary metabolite genes of the model fungus Aspergillus nidulans, we noted a silent gene cluster on chromosome II comprising two nonribosomal peptide synthetase (NRPS) genes, inpA and inpB, flanked by a regulatory gene that we named scpR for secondary metabolism cross-pathway regulator. The induced expression of the scpR gene using the promoter of the alcohol dehydrogenase AlcA led to the transcriptional activation of both the endogenous scpR gene and the NRPS genes. Surprisingly, metabolic profiling of the supernatant of mycelia overexpressing scpR revealed the production of the polyketide asperfuranone. Through transcriptome analysis we found that another silent secondary metabolite gene cluster located on chromosome VIII coding for asperfuranone biosynthesis was specifically induced. Quantitative reverse transcription-PCR proved the transcription not only of the corresponding polyketide synthase (PKS) biosynthesis genes, afoE and afoG, but also of their activator, afoA, under alcAp-scpR-inducing conditions. To exclude the possibility that the product of the inp cluster induced the asperfuranone gene cluster, a strain carrying a deletion of the NRPS gene inpB and, in addition, the alcAp-scpR overexpression cassette was generated. In this strain, under inducing conditions, transcripts of the biosynthesis genes of both the NRPS-containing gene cluster inp and the asperfuranone gene cluster except gene inpB were detected. Moreover, the existence of the polyketide product asperfuranone indicates that the transcription factor ScpR controls the expression of the asperfuranone biosynthesis gene cluster. This expression as well as the biosynthesis of asperfuranone was abolished after the deletion of the asperfuranone activator gene afoA, indicating that ScpR binds to the afoA promoter. To the best of our knowledge, this is the first report of regulatory cross talk between two biosynthesis gene clusters located on different chromosomes.


Subject(s)
Aspergillus nidulans/metabolism , Benzofurans/metabolism , Biosynthetic Pathways/genetics , Macrolides/metabolism , Multigene Family , Peptide Synthases/genetics , Peptide Synthases/metabolism , Aspergillus nidulans/genetics , Gene Expression Profiling , Genes, Fungal , Metabolome
19.
Appl Microbiol Biotechnol ; 88(1): 241-9, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20596706

ABSTRACT

Trisporic acid, its precursors and derivatives are used within zygomycete fungi as communication signals and sexual regulators, and also influence the production rate of the parent compound, beta-carotene. Cultivation parameters during growth and the trisporoid production phase of Blakeslea trispora were studied in two-step shake flask cultures and up-scaled fermentations. Comparison of various fermentation protocols allowed the definition of parameters governing trisporoid production. Highest yields were obtained when the initial growth phase allowed for both rapid growth and fast exhaustion of nitrogen and phosporous sources. Onset of trisporoid production is accompanied by a pH drop in the medium and triggered by nutrient limitation, nitrogen depletion being the most important factor. Supplementation of cultures with carbon at low concentration after onset of trisporoid production led to prolonged growth and higher final product accumulation. B. trispora produces trisporoids in two major series, B and C. During a first peak in trisporic acid accumulation, production of trisporic acid B exceeds that of trisporic acid C, which later accumulates at the expense of the trisporic acid B, indicating a variable regulation of the ratio between these metabolites. These data are valuable for tailoring production systems for enrichment of specific intermediates of this complex signal family.


Subject(s)
Fatty Acids, Unsaturated/metabolism , Mucorales/metabolism , Carbon/metabolism , Culture Media/chemistry , Fatty Acids, Unsaturated/chemistry , Fermentation , Hydrogen-Ion Concentration , Mucorales/growth & development , Nitrogen/metabolism , Phosphorus/metabolism , beta Carotene/metabolism
20.
Microb Cell Fact ; 9: 35, 2010 May 20.
Article in English | MEDLINE | ID: mdl-20487563

ABSTRACT

BACKGROUND: Bioprocess development of recombinant proteins is time consuming and laborious as many factors influence the accumulation of the product in the soluble and active form. Currently, in most cases the developmental line is characterised by a screening stage which is performed under batch conditions followed by the development of the fed-batch process. Performing the screening already under fed-batch conditions would limit the amount of work and guarantee that the selected favoured conditions also work in the production scale. RESULTS: Here, for the first time, high throughput multifactorial screening of a cloning library is combined with the fed-batch technique in 96-well plates, and a strategy is directly derived for scaling to bioreactor scale. At the example of a difficult to express protein, an RNase inhibitor, it is demonstrated that screening of various vector constructs and growth conditions can be performed in a coherent line by (i) applying a vector library with promoters and ribosome binding sites of different strength and various fusion partners together with (ii) an early stage use of the fed-batch technology. It is shown that the EnBase technology provides an easy solution for controlled cultivation conditions in the microwell scale. Additionally the high cell densities obtained provide material for various analyses from the small culture volumes. Crucial factors for a high yield of the target protein in the actual case were (i) the fusion partner, (ii) the use of of a mineral salt medium together with the fed-batch technique, and (iii) the preinduction growth rate. Finally, it is shown that the favorable conditions selected in the microwell plate and shake flask scales also work in the bioreactor. CONCLUSIONS: Cultivation media and culture conditions have a major impact on the success of a screening procedure. Therefore the application of controlled cultivation conditions is pivotal. The consequent use of fed-batch conditions from the first screening phase not only shortens the developmental line by granting that the selected conditions are relevant for the scale up, but in our case also standard batch cultures failed to select the right clone or conditions at all.


Subject(s)
Escherichia coli/cytology , Industrial Microbiology/methods , Microarray Analysis/methods , Bacteriological Techniques , Bioreactors , Clone Cells , Culture Media , Pilot Projects
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