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1.
J Affect Disord ; 310: 106-115, 2022 08 01.
Article in English | MEDLINE | ID: mdl-35525507

ABSTRACT

BACKGROUND: Remote sensing for the measurement and management of long-term conditions such as Major Depressive Disorder (MDD) is becoming more prevalent. User-engagement is essential to yield any benefits. We tested three hypotheses examining associations between clinical characteristics, perceptions of remote sensing, and objective user engagement metrics. METHODS: The Remote Assessment of Disease and Relapse - Major Depressive Disorder (RADAR-MDD) study is a multicentre longitudinal observational cohort study in people with recurrent MDD. Participants wore a FitBit and completed app-based assessments every two weeks for a median of 18 months. Multivariable random effects regression models pooling data across timepoints were used to examine associations between variables. RESULTS: A total of 547 participants (87.8% of the total sample) were included in the current analysis. Higher levels of anxiety were associated with lower levels of perceived technology ease of use; increased functional disability was associated with small differences in perceptions of technology usefulness and usability. Participants who reported higher system ease of use, usefulness, and acceptability subsequently completed more app-based questionnaires and tended to wear their FitBit activity tracker for longer. All effect sizes were small and unlikely to be of practical significance. LIMITATIONS: Symptoms of depression, anxiety, functional disability, and perceptions of system usability are measured at the same time. These therefore represent cross-sectional associations rather than predictions of future perceptions. CONCLUSIONS: These findings suggest that perceived usability and actual use of remote measurement technologies in people with MDD are robust across differences in severity of depression, anxiety, and functional impairment.


Subject(s)
Depressive Disorder, Major , Anxiety Disorders , Cross-Sectional Studies , Depressive Disorder, Major/diagnosis , Humans , Recurrence , Remote Sensing Technology
2.
Intern Med J ; 45(5): 497-509, 2015 May.
Article in English | MEDLINE | ID: mdl-25764311

ABSTRACT

BACKGROUND/AIMS: We aimed to assess differences in patient management, and outcomes, of Australian and New Zealand patients admitted with a suspected or confirmed acute coronary syndrome (ACS). METHODS: We used comprehensive data from the binational Australia and New Zealand ACS 'SNAPSHOT' audit, acquired on individual patients admitted between 00.00 h on 14 May 2012 to 24.00 h on 27 May 2012. RESULTS: There were 4387 patient admissions, 3381 (77%) in Australia and 1006 (23%) in New Zealand; Australian patients were slightly younger (67 vs 69 years, P = 0.0044). Of the 2356 patients with confirmed ACS, Australian patients were at a lower cardiovascular risk with a lower median Global Registry Acute Coronary Events score (147 vs 154 P = 0.0008), but as likely to receive an invasive coronary angiogram (58% vs 54%, P = 0.082), or revascularisation with percutaneous coronary intervention (32% vs 31%, P = 0.92) or coronary artery bypass graft surgery (7.0% vs 5.6%, P = 0.32). Of the 1937 non-segment elevation myocardial infarction/unstable angina pectoris (NSTEMI/UAP) patients, Australian patients had a shorter time to angiography (46 h vs 67 h, P < 0.0001). However, at discharge, Australian NSTEMI/UAP survivors were less likely to receive aspirin (84% vs 89%, P = 0.0079, a second anti-platelet agent (57% vs 63%, P = 0.050) or a beta blocker (67% vs 77%, P = 0.0002). In-hospital death rates were not different (2.7% vs 3.2%, P = 0.55) between Australia and New Zealand. CONCLUSIONS: Overall more similarities were seen, than differences, in the management of suspected or confirmed ACS patients between Australia and New Zealand. However, in several management areas, both countries could improve the service delivery to this high-risk patient group.


Subject(s)
Acute Coronary Syndrome/mortality , Coronary Angiography/statistics & numerical data , Coronary Artery Bypass/mortality , Health Services Accessibility/statistics & numerical data , Hospital Mortality , Acute Coronary Syndrome/diagnosis , Acute Coronary Syndrome/therapy , Aged , Australia/epidemiology , Coronary Artery Bypass/statistics & numerical data , Female , Humans , Male , Medical Audit , Middle Aged , New Zealand/epidemiology , Outcome Assessment, Health Care , Patient Admission , Patient Discharge , Survival Rate
3.
Intern Med J ; 42(10): 1096-103, 2012 Oct.
Article in English | MEDLINE | ID: mdl-21883780

ABSTRACT

AIMS: We sought to assess a broad array of possible precipitants of acute coronary syndromes (ACS) and evaluate their association with detectable inflammatory activation. METHODS AND RESULTS: Within a case-crossover design, using a standardised questionnaire, interviews among 348 ST-elevation myocardial infarction (44%) or high-risk non-ST-elevation ACS patients (56%), explored potential precipitants, including: infection (INF)-temperature >38°C and/or respiratory tract, urinary or skin infection; inflammation (INFL)-exacerbation of inflammatory conditions; exercise (EX)-moderate to heavy exercise; fast food (FF)-consumption of a meal purchased from a fast food company. Risk and control periods were: weekly over 8 weeks for INF and INFL; 24 hourly over 4 days for FF and 4 hourly over 48 h for EX. C-reactive protein (CRP) levels were assessed at admission. These precipitants were identified in 203/348 (58.3%) patients. An increased temporal risk was observed for: INF (0-7 days vs 7-8 weeks odds ratio (OR): 7.5, confidence interval (CI): 1.7-67.6, P = 0.002); INFL (0-7 days vs 7-8 weeks OR: 14.0, CI: 2.13-591.9, P = 0.001); EX (0-4 h vs 24-28 h OR: 2.2, CI: 1.3-3.5, P = 0.001) and FF (0-24 h vs 72-96 h OR: 5.67, CI: 1.6-30.2, P = 0.003). CRP levels were significantly elevated among patients reporting infective and inflammatory potential precipitants, but not among those reporting fast food consumption and unaccustomed moderate-heavy exercise. CONCLUSION: Infection, inflammatory conditions, moderate-heavy exercise and potentially fast food consumption appear to precipitate high-risk ACS. Increased inflammation as measured by CRP was not consistently detected despite the identification of an ACS precipitant. Strategies that target improved overall health may also lead to fewer ACS events through a reduction in triggers.


Subject(s)
Acute Coronary Syndrome/epidemiology , Acute Coronary Syndrome/metabolism , C-Reactive Protein/metabolism , Hospitalization/trends , Inflammation Mediators/metabolism , Acute Coronary Syndrome/pathology , Aged , Biomarkers/blood , Cross-Over Studies , Female , Humans , Inflammation Mediators/physiology , Male , Middle Aged , Precipitating Factors , Retrospective Studies , Risk Factors
4.
Bioresour Technol ; 97(2): 283-91, 2006 Jan.
Article in English | MEDLINE | ID: mdl-16171685

ABSTRACT

The kinetics of Cd2+, Cu2+ and Zn2+ adsorption onto pure and thioglycolic acid treated cassava tuber bark wastes (CTBW) were investigated using a batch sorption technique at 30 degrees C. Kinetic data suggested that the adsorption process was exothermic, the rate limiting sorption step was physisorption and adsorption rates could be best described by a pseudo-second order model. Rate coefficients were determined to range between 1.39x10(-2)min(-1) and 5.94x10(-2)min(-1), 1.46x10(-3)min(-1) and 5.76x10(-3)min(-1) and 0.69x10(-3)min(-1) and 5.8x10(-3)min(-1) for Cd2+, Cu2+ and Zn2+, respectively. The results from these studies indicated that the sorption process is fast and stable. The adsorption equilibria were evaluated using the Langmuir equation and the monolayer sorption capacity was found to range between 5.88-26.3mg/g, 33.3-90.9 mg/g and 22.2-83.3mg/g for Cd2+, Cu2+ and Zn2+, respectively. Negative values of DeltaG(ads)(0) indicated that the adsorption process was spontaneous and exothermic in nature.


Subject(s)
Cadmium/chemistry , Copper/chemistry , Manihot/chemistry , Plant Bark/chemistry , Plant Tubers/chemistry , Zinc/chemistry , Adsorption , Kinetics , Solutions/chemistry , Thermodynamics , Time Factors , Water
5.
Biotechnol Lett ; 26(13): 1095-9, 2004 Jul.
Article in English | MEDLINE | ID: mdl-15218386

ABSTRACT

Biodegradation of solution-cast starch films by Bacillus subtilis was monitored using a quartz crystal microbalance (QCM). A starch film was formed on the crystal by solution casting and exposed to the Bacillus subtilis culture in a bioreactor. The high sensitivity of the QCM could monitor small weight changes of the starch films on the crystal in the initial stages of biodegradation by secreted exo-enzymes of the bacterium. The feasibility of this approach as a means of quantification and characterisation of biodegradability of different polymeric materials by selected organisms is discussed.


Subject(s)
Bacillus subtilis/metabolism , Starch/metabolism , Biodegradation, Environmental , Bioreactors , Feasibility Studies , Sensitivity and Specificity
6.
Water Res ; 37(20): 4913-23, 2003 Dec.
Article in English | MEDLINE | ID: mdl-14604637

ABSTRACT

The sorption of two divalent metal ions, Cd(II) and Zn(II), onto untreated and differentially acid-treated cassava waste biomass over a wide range of reaction conditions was studied at 30 degrees C. The metal ion removal from the spent biomass was also measured. The batch experiments show that pH 4.5-5.5 was the best range for the sorption of the metal ions for untreated and acid-treated biomass. Time-dependent experiments for the metal ions showed that for the two metals examined, binding to the cassava waste biomass was rapid and occurred within 30 min and completed within 1h. High sorption capacities were observed for the two metals. The binding capacity experiments revealed the following amounts of metal ions bound per gram of biomass: 86.68 mg/g Cd, 55.82 mg/g Zn and 647.48 mg/g Cd, 559.74 mg/g Zn for untreated and acid-treated biomass, respectively. It was further found that the rate of sorption was particle-diffusion controlled, and the sorption rate coefficients were determined to be 2.30 x 10(-1)min(-1) (Cd(2+)), 4.0 x 10(-3)min(-1) (Zn(2+)) and 1.09 x 10(-1)min(-1) (Cd(2+)), 3.67 x 10(-2)min(-1) (Zn(2+)) for 0.5 and 1.00 M differential acid treatment, respectively. Desorption studies showed that acid treatment inhibited effective recovery of metal ions already bound to the biomass as a result of stronger sulfhydryl-metal bonds formed. Less than 25% of both metals were desorbed as concentration of acid treating reagent increases. However, over 60% Cd and 40% Zn were recovered from untreated biomass during the desorption study. The results from these studies indicated that both untreated and acid-treated cassava waste biomass could be employed in the removal of toxic and valuable metals from industrial effluents.


Subject(s)
Cadmium/isolation & purification , Water Pollutants/isolation & purification , Water Purification/methods , Zinc/isolation & purification , Biodegradation, Environmental , Biomass , Cadmium/chemistry , Hydrogen-Ion Concentration , Manihot/chemistry , Zinc/chemistry
7.
Bioresour Technol ; 90(3): 345-8, 2003 Dec.
Article in English | MEDLINE | ID: mdl-14575960

ABSTRACT

The use of different chemically modified cassava waste biomass for the enhancement of the adsorption of three metal ions Cd, Cu and Zn from aqueous solution is reported in this paper. Treating with different concentrations of thioglycollic acid modified the cassava waste biomass. The sorption rates of the three metals were 0.2303 min(-1) (Cd(2+)), 0.0051 min(-1) (Cu(2+)), 0.0040 min(-1) (Zn(2+)) and 0.109 min(-1) (Cd(2+)), 0.0069 min(-1) (Cu(2+)), 0.0367 min(-1) (Zn(2+)) for 0.5 and 1.00 M chemically modified levels, respectively. The adsorption rates were quite rapid and within 20-30 min of mixing, about 60-80% of these ions were removed from the solutions by the biomass and that chemically modifying the binding groups in the biomass enhanced its adsorption capacity towards the three metals. The results further showed that increased concentration of modifying reagent led to increased incorporation, or availability of more binding groups, in the biomass matrix, resulting in improved adsorptivity of the cassava waste biomass. The binding capacity study showed that the cassava waste, which is a serious environmental nuisance, due to foul odour released during decomposition, has the ability to adsorb trace metals from solutions.


Subject(s)
Manihot/chemistry , Metals, Heavy/chemistry , Waste Management , Water Purification/methods , Adsorption , Sulfhydryl Compounds/chemistry
8.
Environ Monit Assess ; 78(3): 309-26, 2002 Sep.
Article in English | MEDLINE | ID: mdl-12374394

ABSTRACT

The distribution of trace metals in sediments of the lower reaches of the New Calabar River, Nigeria was evaluated together with the partitioning of their chemical species between five geochemical phases. Samplings were made in five zones at the lower reaches of the New Calaber River. All the trace metals were determined by AAS after selective chemical extractions and concentrations given in microg gm(-1) (dry weight basis). The average total concentrations found for trace metals in the sediment were ( mean +/- rsd.) Pb: 41.6 +/- 0.29, Zn: 31.60 +/- 0.42, Cd: 12.80 +/- 0.92, Co: 92 +/- 0.25, Cu: 25.5 +/- 0.65 and Ni: 3.2 +/- 0.25. Maxima and minima concentrations are inconsistent with previous studies in other rivers of this region. Spatial distribution revealed that the sources of trace metals into the river appeared to be of non-point. Five contamination indices were applied in studying the partitioning of the trace metals in the sediment. These indices provided bases for ascertaining the potential environmental risk of trace metals in the river system. The results denote high partition levels in the more mobile and more dangerous phases.


Subject(s)
Geologic Sediments/chemistry , Metals, Heavy/analysis , Trace Elements/analysis , Environmental Monitoring , Nigeria , Risk Factors
9.
Exp Hematol ; 29(8): 981-92, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11495704

ABSTRACT

OBJECTIVE: The identification of cell-surface antigens whose expression is limited to primitive hematopoietic progenitor cells (HPC) is of major value in the identification, isolation, and characterization of candidate stem cells in human hemopoietic tissues. Based on the observation that bone marrow stromal cells and primitive HPC share several cell-surface antigens, we sought to generate monoclonal antibodies to HPC by immunization with cultured human stromal cells. METHODS: BALB/c mouse were immunized with human bone marrow (BM)-derived stromal cells. Splenocytes isolated from immunized mice were fused with the NS-1 murine myeloma cell line and resulting hybridomas selected in HAT medium, then screened for reactivity against stromal cells, peripheral blood (PB), and BM cells. RESULTS: A monoclonal antibody (MAb), BB9, was identified based on its binding to stromal cells, a minor subpopulation of mononuclear cells in adult human BM, and corresponding lack of reactivity with leukocytes in PB. BB9 bound to a minor subpopulation of BM CD34(+) cells characterized by high-level CD34 antigen and Thy-1 expression, low-absent expression of CD38, low retention of Rhodamine 123, and quiescent cycle status as evidenced by lack of labeling with Ki67. CD34(+)BB9(+) cells, in contrast to CD34(+)BB9(-) cells, demonstrated a capacity to sustain hematopoiesis in pre-CFU culture stimulated by the combination of IL-3, IL-6, G-CSF, and SCF. BB9 also demonstrated binding to CD34(+) cells from mobilized PB. CONCLUSION: Collectively, these data therefore demonstrate that MAb BB9 identifies an antigen, which is selectively expressed by hierarchically primitive human HPC and also by stromal cells.


Subject(s)
Antibodies, Monoclonal , Bone Marrow Cells/cytology , Hematopoietic Stem Cells/cytology , Leukocytes/cytology , Membrane Glycoproteins/analysis , Stromal Cells/cytology , Animals , Antibody Specificity , Antigens, CD/analysis , Antigens, CD34/analysis , Breast Neoplasms , Cell Line , Cell Separation/methods , Cryopreservation , Female , Flow Cytometry , HL-60 Cells , Hematopoietic Stem Cell Mobilization , Humans , Hybridomas , Jurkat Cells , K562 Cells , Membrane Glycoproteins/immunology , Mice , Mice, Inbred BALB C , Multiple Myeloma , Tumor Cells, Cultured
10.
Br J Haematol ; 109(4): 751-8, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10929025

ABSTRACT

Fifty-two patients with poor prognosis carcinoma of the breast underwent peripheral blood stem cell (PBSC) mobilization using five different regimens. The yields of primitive haemopoietic progenitors were quantified by a recently described pre-colony-forming unit (pre-CFU) assay using limiting dilution analysis (LDA). Results of days 14 and 35 pre-CFU were also correlated with conventional CD34+ cell enumeration, CFU-GM (granulocyte-macrophage) and long-term culture-initiating cell (LTCIC) assays. The yield of pre-CFUs with the combination of granulocyte colony-stimulating factor (G-CSF) and stem cell factor (SCF) was significantly higher than with G-CSF alone, cyclophosphamide (Cyclo) and granulocyte-monocyte colony-stimulating factor (GM-CSF), interleukin (IL)-3 and GM-CSF, or Cyclo alone. No significant correlation between neutrophil engraftment and pre-CFU could be demonstrated. Furthermore, CFU-GM was shown to bear a stronger correlation with pre-CFU and LTCIC than CD34+ cell measurement; thus, CFU-GM remains a useful biological tool for haemopoietic stem cell assay. We conclude that the combination of G-CSF and SCF mobilizes the highest number of pre-CFUs as measured by functional pre-CFU assay, which provides an alternative measurement of primitive haemopoietic progenitors to the LTCIC assay.


Subject(s)
Breast Neoplasms/therapy , Granulocyte Colony-Stimulating Factor/administration & dosage , Hematopoietic Stem Cell Mobilization/methods , Stem Cell Factor/administration & dosage , Antigens, CD34 , Cells, Cultured , Colony-Forming Units Assay , Cyclophosphamide/administration & dosage , Female , Granulocyte-Macrophage Colony-Stimulating Factor/administration & dosage , Hematopoietic Stem Cell Transplantation , Humans , Immunosuppressive Agents/administration & dosage , Interleukin-3/administration & dosage , Interleukin-6/administration & dosage , Lymphocyte Count , Time Factors
11.
N Z Med J ; 111(1067): 200-3, 1998 Jun 12.
Article in English | MEDLINE | ID: mdl-9673632

ABSTRACT

AIM: To report on the changing use of slow acting antirheumatic drugs in the treatment of rheumatoid arthritis by contrasting prescribing patterns in 1990 and 1995. METHOD: Data were extracted from the case notes of 103 outpatients with rheumatoid arthritis. Results were compared with those obtained in 1990 in a survey of 81 patients using identical methods. RESULTS: There was a significant increase in the use of methotrexate between 1990 and 1995, and a marked decrease in the use of auranofin. A new feature was the use of drugs in combination. Methotrexate was the most effective agent and auranofin least effective (p = 0.02). The agent with the highest average toxicity score was D-penicillamine. The long term tolerability of methotrexate was superior, with a median time for remaining on therapy 6.4 times longer than that of the other slow acting antirheumatic drugs (p = 0.01). CONCLUSIONS: Our results suggest that identified trends in the altered use of slow acting antirheumatic drugs for treatment of rheumatoid arthritis are rationally based on the increased use of the most effective agents and decreased use of those with greater toxicity and lesser efficacy.


Subject(s)
Antirheumatic Agents/administration & dosage , Arthritis, Rheumatoid/drug therapy , Adult , Aged , Ambulatory Care/trends , Antirheumatic Agents/adverse effects , Auranofin/administration & dosage , Auranofin/adverse effects , Cohort Studies , Delayed-Action Preparations , Drug Utilization/trends , Female , Humans , Male , Methotrexate/administration & dosage , Methotrexate/adverse effects , Middle Aged , New Zealand , Retrospective Studies , Treatment Outcome
12.
Blood ; 90(6): 2260-72, 1997 Sep 15.
Article in English | MEDLINE | ID: mdl-9310477

ABSTRACT

The ligand for flt-3 (FLT3L) exhibits striking structural homology with stem cell factor (SCF) and monocyte colony-stimulating factor (M-CSF) and also acts in synergy with a range of other hematopoietic growth factors (HGF). In this study, we show that FLT3L responsive hematopoietic progenitor cells (HPC) are CD34+CD38-, rhodamine 123dull, and hydroperoxycyclophosphamide (4-HC) resistant. To investigate the basis for the capacity of FLT3L to augment the de novo generation of myeloid progenitors from CD34+CD38- cells, single bone marrow CD34+CD38- cells were sorted into Terasaki wells containing serum-free medium supplemented with interleukin-3 (IL-3), IL-6, granulocyte colony-stimulating factor (G-CSF), SCF (4 HGF) +/- FLT3L. Under these conditions, FLT3L recruited approximately twofold more CD34+CD38- cells into division than 4 HGF alone. The enhanced proliferative response to FLT3L was evident by day 3 and was maintained at all subsequent time points examined. In accord with these findings, we also show that transduction of CD34+CD38- cells with the LAPSN retrovirus is enhanced by FLT3L. The results of these experiments therefore indicate that increased recruitment of primitive HPC into cell cycle underlies the ex vivo expansion potential of FLT3L and also its ability to improve retroviral transduction of HPC.


Subject(s)
Antigens, CD , Erythropoiesis , Hematopoiesis , Hematopoietic Stem Cells/cytology , Membrane Proteins/physiology , Proto-Oncogene Proteins/physiology , Receptor Protein-Tyrosine Kinases/physiology , ADP-ribosyl Cyclase , ADP-ribosyl Cyclase 1 , Adult , Antigens, CD34/analysis , Antigens, Differentiation/analysis , Bone Marrow Cells , Cell Cycle , Cell Separation , Cells, Cultured , Flow Cytometry , Hematopoietic Cell Growth Factors/physiology , Hematopoietic Stem Cells/physiology , Humans , Immunophenotyping , Membrane Glycoproteins , NAD+ Nucleosidase/analysis , Retroviridae/genetics , Transduction, Genetic , fms-Like Tyrosine Kinase 3
13.
J Bacteriol ; 179(9): 2835-9, 1997 May.
Article in English | MEDLINE | ID: mdl-9139896

ABSTRACT

G x C-->A x T transitions within T-C or C-C bipyrimidine sequences are by far the most frequent class of mutation induced by 254-nm UV irradiation in most genes and species investigated, but the reason for the high degree of mutability and specificity at these sites is uncertain. Some data implicate the deamination of cytosine to uracil as a possible cause, but other results appear to indicate that the rate of deamination is too low for this to be significant in Escherichia coli. If deamination is not the cause, the high degree of mutability must presumably reflect the inherent properties of T-C and C-C dimers. We investigated this question by transfecting excision-deficient and excision-proficient strains of E. coli with single-stranded vectors that carried a site-specific cis-syn T-C cyclobutane dimer and by analyzing the nucleotide sequences of replicated vector products. We found that replication past the T-C dimer, like replication past its T-T and U-U counterparts, is in fact >95% accurate and that the frequencies of bypass are also very similar for these photoproducts. Since the T-C dimer appears to be only weakly mutagenic, the high frequency of UV-induced mutations at T-C sites presumably depends on some other process, such as deamination, although the mechanism remains to be established.


Subject(s)
Cyclobutanes , Escherichia coli/genetics , Ultraviolet Rays , Bacteriophage M13 , Base Composition , Base Sequence , Escherichia coli/radiation effects , Genes, Bacterial , Genetic Vectors , Guanine , Humans , Mutagenesis , Oligodeoxyribonucleotides , Point Mutation
14.
J Mol Biol ; 235(2): 465-71, 1994 Jan 14.
Article in English | MEDLINE | ID: mdl-8289275

ABSTRACT

The thymine-cytosine pyrimidine-pyrimidone (6-4) adduct has variously been predicted to be among the most and among the least mutagenic of the ultraviolet light photoproducts. We have therefore investigated the frequency and accuracy of DNA replication past this lesion, using a single-stranded M13mp7-based vector with a uniquely located example of this lesion transfected into SOS-induced and uninduced cells of a uvr A6 strain of Escherichia coli. Both the UVC T-C (6-4) adduct and its Dewar valence (UVB) photoisomer were studied. Random samples from non-selective collections of progeny phage were sequenced to determine the nature of the replication events that occurred at or near the site of template damage under SOS conditions. The UVC (6-4) adduct was found to be much less mutagenic than its T-T counterpart, but still much more mutagenic than a cyclobutane dimer; 34% (71 out of 206) of all bypass events yielded mutations, of which all were targeted and 80% (57 out of 71) were 3' C-->T transitions. The Dewar valence photoisomer exhibited reduced specificity and enhanced mutagenicity; 79% (183 out of 233) of the phage progeny were mutants, of which all but one were targeted and 45% (83 out of 183) were 3' C-->T transitions. For the most part, these results are consistent with a model postulating base-pairing between the pyrimidinone (of either the C or T variety) and guanine, via hydrogen bonds at N-3 and O-2 in the UVC, but not the Dewar, isomer. The occurrence of the 3' C-->T transitions, not predicted by this model, shows however that the absence of a methyl group at C-5 also has a significant influence on mutation induction. Both isomers were efficient blocks to replication; less than 1% of these vectors could be replicated in uninduced cells. Following SOS induction the frequency of bypass increased to 24.5% and 12.5% for the UVC and the Dewar isomers, respectively.


Subject(s)
DNA Damage , DNA Replication/genetics , Pyrimidines , Pyrimidinones , Base Sequence , Cytosine/radiation effects , DNA Mutational Analysis , DNA Replication/radiation effects , Models, Genetic , Molecular Sequence Data , Pyrimidines/radiation effects , Pyrimidinones/radiation effects , SOS Response, Genetics , Thymine/radiation effects , Ultraviolet Rays
15.
Mutat Res ; 299(3-4): 157-63, 1993 May.
Article in English | MEDLINE | ID: mdl-7683084

ABSTRACT

Data from experiments with single-stranded vectors that carry a site-specific cyclobutane dimer, pyrimidine (6-4) pyrimidone adduct, or abasic lesion, replicated in either E. coli or, in some cases, bakers' yeast, Saccharomyces cerevisiae, are used to examine two questions: (i) what factors are responsible for the lesion's mutagenicity? and (ii) what are the relative contributions of different photoproducts to the spectrum of UV-induced mutations? With respect to the first question, we suggest that the structure of the mutagen-modified template itself largely determines the kinds of mutations induced, but the relative frequencies of these mutations, the error frequency, and the bypass frequency are strongly dependent on the particular organism studied. With respect to the second question, we suggest that cyclobutane dimers may be responsible for most of the mutations in slowly replicating genomes because of the deamination of cytosine, and that the T-T, and to a lesser extent the T-C, (6-4) adducts play a greater role in the UV mutagenesis of quickly replicating viruses, such as M13 and lambda phage.


Subject(s)
DNA Damage , Escherichia coli/genetics , Mutagenesis , Pyrimidine Dimers , Saccharomyces cerevisiae/genetics , Ultraviolet Rays , Bacteriophage M13/genetics , Bacteriophage M13/radiation effects , Bacteriophage lambda/genetics , Bacteriophage lambda/radiation effects , DNA, Bacterial/radiation effects , DNA, Fungal/radiation effects , Escherichia coli/radiation effects , Saccharomyces cerevisiae/radiation effects
16.
J Bacteriol ; 173(24): 7996-9, 1991 Dec.
Article in English | MEDLINE | ID: mdl-1744057

ABSTRACT

Base substitutions account for 90% of all forward mutations sequenced in unmodified M13lacI DNA grown in both UV-irradiated and nonirradiated hosts. The principal effect of SOS induction was an increase in the contribution of transversions, in particular A.T----T.A events.


Subject(s)
Bacteriophages/genetics , Mutagenesis , SOS Response, Genetics , Base Sequence , DNA, Viral , Molecular Sequence Data
17.
Mol Gen Genet ; 227(1): 160-4, 1991 May.
Article in English | MEDLINE | ID: mdl-2046657

ABSTRACT

A novel forward mutational system, based on the acquisition of an Iq-d dominant phenotype from an initial Iq- recessive state, was used to identify second-site frameshift mutation [+/- 1(+/- 3n) events] within the N-terminal region of the lacI gene of Escherichia coli. The DNA sequences are described of forty-six spontaneous and twenty 9-aminoacridine(9-AA)-induced second site mutations. Although -1 frameshift events dominate both spectra, the nature and site specificity of these events clearly distinguish two mutational distributions. The spontaneous distribution contains two -(A:T) frameshift hotspots; one within a monotonic A5 run (9 occurrences), the other at a 5'-CACAACAAC-3' sequence (12 occurrences). In contrast 17 of the 20 mutations recovered after 9-AA treatment involve the loss of a G:C pair, 14 of which occur at a single site (5'-CGGGC-3'). The striking specificity of the observed mutational hotspots is of interest since this open genetic target contains similar sequences which were infrequently recovered.


Subject(s)
Aminacrine/pharmacology , Escherichia coli/genetics , Frameshift Mutation , Genes, Bacterial , Mutagenesis , Base Sequence , Codon/genetics , DNA, Bacterial/genetics , Escherichia coli/drug effects , Genes, Bacterial/drug effects , Genetic Complementation Test , Genotype , Molecular Sequence Data , Protein Biosynthesis
18.
Mol Carcinog ; 4(3): 180-8, 1991.
Article in English | MEDLINE | ID: mdl-2064723

ABSTRACT

The host-mediated assay (HMA) was used to determine the spectra of mutations induced in the lacl gene of Escherichia coli cells recovered from the livers of Swiss mice exposed to the carcinogens 1,2-dimethylhydrazine (SDMH), azoxymethane (AOM), and methylazoxymethanolacetate (MAMA). These spectra were further compared with changes induced by dimethylnitrosamine (DMNA) in the HMA methodology. A total of 177 independent lacl mutations arising in the HMA following exposure to SDMH, AOM, and MAMA were analyzed. Single-base substitutions accounted for 97% of all mutations analyzed. The vast majority of the single-base substitutions consisted of G:C----A:T transitions (94% of all mutations). The remaining mutations consisted of A:T----G:C transitions (3% of all mutations) while non-base substitutions accounted for only 3% of the total mutagenesis. The latter mutations consisted of one frameshift mutation and four lacO deletions. The distribution of G:C----A:T transitions induced by the three chemicals in the first 200 bp of the lacl gene was not random, but rather clustered at sites where a target guanine was flanked at the 5' site by a purine residue.


Subject(s)
Carcinogens, Environmental , DNA, Bacterial/drug effects , Escherichia coli/genetics , Genes, Bacterial/drug effects , Liver/microbiology , 1,2-Dimethylhydrazine , Alkylating Agents/toxicity , Animals , Azoxymethane/toxicity , Base Sequence/drug effects , DNA Mutational Analysis , Dimethylhydrazines/toxicity , Drug Resistance, Microbial , Liver/drug effects , Methylazoxymethanol Acetate/toxicity , Mice , Mice, Inbred Strains , Molecular Sequence Data
19.
Environ Mol Mutagen ; 15(2): 107-22, 1990.
Article in English | MEDLINE | ID: mdl-2407530

ABSTRACT

Alkylating treatments predominantly induce G: C = greater than A:T transitions, consistent with the predicted significance of the miscoding potential of the O6-alG lesion. However, the frequency and distribution of these events induced by any one compound may be diagnostic. SN1 agents that act via an alkyldiazonium cation, such as the N-nitroso compounds, preferentially generate G: C = greater than A:T transitions at 5'-RG-3' sites, while the more SN2 alkylsulfates and alkylalkane-sulfonates do not. The precise nature of this site bias and the possibility of strand bias are target dependent. The extent of this site bias and the contribution of other base substitutions are substituent size dependent. A similar 5'-RT-3' effect is seen for A:T = greater than G:C transitions, presumably directed by O4-alT lesions. The 5'-RG-3' effect, at least, likely reflects a deposition specificity arising from some aspect of helix geometry, although it may be further exaggerated by alkylation-specific repair. Excision repair appears to preferentially reduce the occurrence of ethylation-induced G:C = greater than A:T and A:T = greater than G:C transitions at sites flanked by A:T base pairs. This may be due to an enhancement of the helical distortion imposed by damage at such positions. A similar effect is not seen for methylation-induced mutations and in the case of propyl adducts, the influence of excision repair on the ultimate distribution of mutation cannot be as easily defined with respect to neighbouring sequence.


Subject(s)
Alkylating Agents/pharmacology , DNA Repair , DNA/drug effects , Mutation , Base Composition , Base Sequence , DNA/genetics , DNA, Bacterial/drug effects , DNA, Bacterial/genetics , Escherichia coli/drug effects , Escherichia coli/genetics , Escherichia coli/radiation effects , Molecular Sequence Data , Structure-Activity Relationship , Ultraviolet Rays
20.
Mutagenesis ; 4(3): 230-4, 1989 May.
Article in English | MEDLINE | ID: mdl-2659941

ABSTRACT

The mutational specificity of the monofunctional alkylating agent dimethylsulphate has been determined through the DNA sequence characterization of 121 lacI-d mutations of Escherichia coli. The predominant mutation induced was the G:C----A:T transition (75%). Transversions constituted 20% of all mutation with the greatest contribution being that of G:C----T:A events (12%). Runs of G:C base pairs were the preferred sites of frameshift mutation. One 6-bp sequence (5'-CCCGCG-3') appeared to be highly susceptible to all classes of mutation and events within this sequence accounted for 33% of all mutations characterized. Although the distribution of G:C----A:T mutations appeared non-random, the site-specificity observed was quite different from that reported for SN1 alkylating agents. The results of this study highlight the differences between the consequences of SN1 and SN2 alkylation pathways.


Subject(s)
Alkylating Agents/toxicity , DNA/drug effects , Genes, Bacterial/drug effects , Mutagens , Sulfuric Acid Esters/toxicity , Sulfuric Acids/toxicity , Base Sequence , Escherichia coli/drug effects , Escherichia coli/genetics , Molecular Sequence Data
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