A Review on Machine Learning for EEG Signal Processing in Bioengineering.

Electroencephalography (EEG) has been a staple method for identifying certain health conditions in patients since its discovery. Due to the many different types of classifiers available to use, the analysis methods are also equally numerous. In this review, we will be examining specifically machine learning methods that have been developed for EEG analysis with bioengineering applications. We reviewed literature from 1988 to 2018 to capture previous and current classification methods for EEG in multiple applications. From this information, we are able to determine the overall effectiveness of each machine learning method as well as the key characteristics. We have found that all the primary methods used in machine learning have been applied in some form in EEG classification. This ranges from Naive-Bayes to Decision Tree/Random Forest, to Support Vector Machine (SVM). Supervised learning methods are on average of higher accuracy than their unsupervised counterparts. This includes SVM and KNN. While each of the methods individually is limited in their accuracy in their respective applications, there is hope that the combination of methods when implemented properly has a higher overall classification accuracy. This paper provides a comprehensive overview of Machine Learning applications used in EEG analysis. It also gives an overview of each of the methods and general applications that each is best suited to.

Deep Learning for Autism Diagnosis and Facial Analysis in Children.

In this paper, we introduce a deep learning model to classify children as either healthy or potentially having autism with 94.6% accuracy using Deep Learning. Patients with autism struggle with social skills, repetitive behaviors, and communication, both verbal and non-verbal. Although the disease is considered to be genetic, the highest rates of accurate diagnosis occur when the child is tested on behavioral characteristics and facial features. Patients have a common pattern of distinct facial deformities, allowing researchers to analyze only an image of the child to determine if the child has the disease. While there are other techniques and models used for facial analysis and autism classification on their own, our proposal bridges these two ideas allowing classification in a cheaper, more efficient method. Our deep learning model uses MobileNet and two dense layers to perform feature extraction and image classification. The model is trained and tested using 3,014 images, evenly split between children with autism and children without it; 90% of the data is used for training and 10% is used for testing. Based on our accuracy, we propose that the diagnosis of autism can be done effectively using only a picture. Additionally, there may be other diseases that are similarly diagnosable.

Multimodal data analysis of epileptic EEG and rs-fMRI via deep learning and edge computing.

BACKGROUND AND OBJECTIVE: Multimodal data analysis and large-scale computational capability is entering medicine in an accelerative fashion and has begun to influence investigational work in a variety of disciplines. It is also informing us of therapeutic interventions that will come about with such development. Epilepsy is a chronic brain disorder in which functional changes may precede structural ones and which may be detectable using existing modalities. METHODS: Functional connectivity analysis using electroencephalography (EEG) and resting state-functional magnetic resonance imaging (rs-fMRI) has provided such meaningful input in cases of epilepsy. By leveraging the potential of autonomic edge computing in epilepsy, we develop and deploy both noninvasive and invasive methods for monitoring, evaluation, and regulation of the epileptic brain. First, an autonomic edge computing framework is proposed for the processing of big data as part of a decision support system for surgical candidacy. Second, a multimodal data analysis using independently acquired EEG and rs-fMRI is presented for estimation and prediction of the epileptogenic network. Third, an unsupervised feature extraction model is developed for EEG analysis and seizure prediction based on a Convolutional deep learning (CNN) structure for distinguishing preictal (pre-seizure) state from non-preictal periods by support vector machine (SVM) classifier. RESULTS: Experimental and simulation results from actual patient data validate the effectiveness of the proposed methods. CONCLUSIONS: The combination of rs-fMRI and EEG/iEEG can reveal more information about dynamic functional connectivity. However, simultaneous fMRI and EEG data acquisition present challenges. We have proposed system models for leveraging and processing independently acquired fMRI and EEG data.

Random ensemble learning for EEG classification.

Real-time detection of seizure activity in epilepsy patients is critical in averting seizure activity and improving patients' quality of life. Accurate evaluation, presurgical assessment, seizure prevention, and emergency alerts all depend on the rapid detection of seizure onset. A new method of feature selection and classification for rapid and precise seizure detection is discussed wherein informative components of electroencephalogram (EEG)-derived data are extracted and an automatic method is presented using infinite independent component analysis (I-ICA) to select independent features. The feature space is divided into subspaces via random selection and multichannel support vector machines (SVMs) are used to classify these subspaces. The result of each classifier is then combined by majority voting to establish the final output. In addition, a random subspace ensemble using a combination of SVM, multilayer perceptron (MLP) neural network and an extended k-nearest neighbors (k-NN), called extended nearest neighbor (ENN), is developed for the EEG and electrocorticography (ECoG) big data problem. To evaluate the solution, a benchmark ECoG of eight patients with temporal and extratemporal epilepsy was implemented in a distributed computing framework as a multitier cloud-computing architecture. Using leave-one-out cross-validation, the accuracy, sensitivity, specificity, and both false positive and false negative ratios of the proposed method were found to be 0.97, 0.98, 0.96, 0.04, and 0.02, respectively. Application of the solution to cases under investigation with ECoG has also been effected to demonstrate its utility.

Comparative performance evaluation of automated segmentation methods of hippocampus from magnetic resonance images of temporal lobe epilepsy patients.

PURPOSE: Segmentation of the hippocampus from magnetic resonance (MR) images is a key task in the evaluation of mesial temporal lobe epilepsy (mTLE) patients. Several automated algorithms have been proposed although manual segmentation remains the benchmark. Choosing a reliable algorithm is problematic since structural definition pertaining to multiple edges, missing and fuzzy boundaries, and shape changes varies among mTLE subjects. Lack of statistical references and guidance for quantifying the reliability and reproducibility of automated techniques has further detracted from automated approaches. The purpose of this study was to develop a systematic and statistical approach using a large dataset for the evaluation of automated methods and establish a method that would achieve results better approximating those attained by manual tracing in the epileptogenic hippocampus. METHODS: A template database of 195 (81 males, 114 females; age range 32-67 yr, mean 49.16 yr) MR images of mTLE patients was used in this study. Hippocampal segmentation was accomplished manually and by two well-known tools (FreeSurfer and hammer) and two previously published methods developed at their institution [Automatic brain structure segmentation (ABSS) and LocalInfo]. To establish which method was better performing for mTLE cases, several voxel-based, distance-based, and volume-based performance metrics were considered. Statistical validations of the results using automated techniques were compared with the results of benchmark manual segmentation. Extracted metrics were analyzed to find the method that provided a more similar result relative to the benchmark. RESULTS: Among the four automated methods, ABSS generated the most accurate results. For this method, the Dice coefficient was 5.13%, 14.10%, and 16.67% higher, Hausdorff was 22.65%, 86.73%, and 69.58% lower, precision was 4.94%, -4.94%, and 12.35% higher, and the root mean square (RMS) was 19.05%, 61.90%, and 65.08% lower than LocalInfo, FreeSurfer, and hammer, respectively. The Bland-Altman similarity analysis revealed a low bias for the ABSS and LocalInfo techniques compared to the others. CONCLUSIONS: The ABSS method for automated hippocampal segmentation outperformed other methods, best approximating what could be achieved by manual tracing. This study also shows that four categories of input data can cause automated segmentation methods to fail. They include incomplete studies, artifact, low signal-to-noise ratio, and inhomogeneity. Different scanner platforms and pulse sequences were considered as means by which to improve reliability of the automated methods. Other modifications were specially devised to enhance a particular method assessed in this study.

Support Vector Machine with nonlinear-kernel optimization for lateralization of epileptogenic hippocampus in MR images.

Surgical treatment is suggested for seizure control in medically intractable epilepsy patients. Detailed pre-surgical evaluation and lateralization using Magnetic Resonance Images (MRI) is expected to result in a successful surgical outcome. In this study, an optimized pattern recognition approach is proposed for lateralization of mesial Temporal Lobe Epilepsy (mTLE) patients using asymmetry of imaging indices of hippocampus. T1-weighted and Fluid-Attenuated Inversion Recovery (FLAIR) images of 76 symptomatic mTLE patients are considered. First, hippocampus is segmented using automatic and manual segmentation methods; then, volumetric and intensity features are extracted from the MR images. A nonlinear Support Vector Machine (SVM) with optimized Gaussian Radial Basis Function (GRBF) kernel is used to classify the imaging features. Using leave-one-out cross validation, this method results in a correct lateralization rate of 82%, a probability of detection for the left side of 0.90 (with false alarm probability of 0.04) and a probability of detection for the right side of 0.69 (with zero false alarm probability). The lateralization results are compared to linear SVM, multi-layer perceptron Artificial Neural Network (ANN), and volumetry and FLAIR asymmetry analysis. This lateralization method is suggested for pre-surgical evaluation using MRI before surgical treatment in mTLE patients. It achieves a more correct lateralization rate and fewer false positives.

Statistical validation of automatic methods for hippocampus segmentation in MR images of epileptic patients.

Hippocampus segmentation is a key step in the evaluation of mesial Temporal Lobe Epilepsy (mTLE) by MR images. Several automated segmentation methods have been introduced for medical image segmentation. Because of multiple edges, missing boundaries, and shape changing along its longitudinal axis, manual outlining still remains the benchmark for hippocampus segmentation, which however, is impractical for large datasets due to time constraints. In this study, four automatic methods, namely FreeSurfer, Hammer, Automatic Brain Structure Segmentation (ABSS), and LocalInfo segmentation, are evaluated to find the most accurate and applicable method that resembles the bench-mark of hippocampus. Results from these four methods are compared against those obtained using manual segmentation for T1-weighted images of 157 symptomatic mTLE patients. For performance evaluation of automatic segmentation, Dice coefficient, Hausdorff distance, Precision, and Root Mean Square (RMS) distance are extracted and compared. Among these four automated methods, ABSS generates the most accurate results and the reproducibility is more similar to expert manual outlining by statistical validation. By considering p-value<;0.05, the results of performance measurement for ABSS reveal that, Dice is 4%, 13%, and 17% higher, Hausdorff is 23%, 87%, and 70% lower, precision is 5%, -5%, and 12% higher, and RMS is 19%, 62%, and 65% lower compared to LocalInfo, FreeSurfer, and Hammer, respectively.

Lateralization of temporal lobe epilepsy by imaging-based response-driven multinomial multivariate models.

We have developed response-driven multinomial models, based on multivariate imaging features, to lateralize the epileptogenicity in temporal lobe epilepsy (TLE) patients. To this end, volumetrics and statistical quantities of FLAIR intensity and normalized ictal-interictal SPECT intensity on left and right hippocampi were extracted from preoperative images of forty-five retrospective TLE patients with surgical outcome of Engel class l. Using multinomial logistic function regression, the parameters of various univariate and multivariate models were estimated. Among univariate response models, the response model with SPECT attributes and response model with mean FLAIR attributes achieved the lowest fit deviance (65.1±0.2 and 65.5±0.3, respectively). They resulted in the highest probability of detection (0.82) and lowest probability of false alarm (0.02) for the epileptogenic side. The multivariate response model with incorporating all volumetrics, mean and standard deviation FLAIR, and SPECT attributes achieved a significantly lower fit deviance than other response models (11.9±0.1, p <; 0.001). It reached probability of detection of 1 with no false alarms. We were able to correctly lateralize the fifteen TLE patients who had undergone phase II intracranial monitoring. Therefore, the phase II intracranial monitoring might have been avoided for this set of patients. Based on this lateralization response model, the side of epileptogenicity was also detected for all thirty patients who had preceded to resection with only phase I of EEG monitoring. In conclusion, the proposed multinomial multivariate response-driven model for lateralization of epileptogenicity in TLE patients can help in decision-making prior to surgical resection and may reduce the need for implantation of intracranial monitoring electrodes.

Three cuts method for identification of COPD.

Two main forms of COPD (Chronic Obstructive Pulmonary Disease) refer to a group of lung diseases that block airflow and cause a huge degree of human suffering. A new method for identifying and estimating the severity of COPD from three-dimensional (3-D) pulmonary X-ray CT images would be helpful for evaluation of treatment effects and early diagnosing is presented in this paper. This method has five main steps. Firstly, corresponding positions of lungs in inspiration and expiration are found based on anatomical structures. Secondly, lung regions are segmented from the CT images by active contours. Next, the left and right lungs are separated using a sequence of morphological operations. Then, parenchyma variations of three main cuts which selected by a feed-forward neural network are found based on the inspiratory and expiratory states. Finally, a pattern classifier is used to decide about the disease and its severity. Twenty patients with air-trapping problems and twelve normal adults were enrolled in this study. Based on the results, a mathematical model was developed to relate variations of lung volumes to severity of disease. The sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV) and the accuracy of our method for right regions were %81.6, %80.5, %87.5, %72.5 and %81.3 respectively. And these parameters for left regions were %90, %83.3, %90, %83.3 and %87.5 respectively. The proposed method may assist radiologists in detection of Asthma and COPD as a computer aided diagnosis (CAD) system.

Detection and Severity Scoring of Chronic Obstructive Pulmonary Disease Using Volumetric Analysis of Lung CT Images.

BACKGROUND: Chronic obstructive pulmonary disease (COPD) is a devastating disease.While there is no cure for COPD and the lung damage associated with this disease cannot be reversed, it is still very important to diagnose it as early as possible. OBJECTIVES: In this paper, we propose a novel method based on the measurement of air trapping in the lungs from CT images to detect COPD and to evaluate its severity. PATIENTS AND METHODS: Twenty-five patients and twelve normal adults were included in this study. The proposed method found volumetric changes of the lungs from inspiration to expiration. To this end, trachea CT images at full inspiration and expiration were compared and changes in the areas and volumes of the lungs between inspiration and expiration were used to define quantitative measures (features). Using these features,the subjects were classified into two groups of normal and COPD patients using a Bayesian classifier. In addition, t-tests were applied to evaluate discrimination powers of the features for this classification. RESULTS: For the cases studied, the proposed method estimated air trapping in the lungs from CT images without human intervention. Based on the results, a mathematical model was developed to relate variations of lung volumes to the severity of the disease. CONCLUSIONS: As a computer aided diagnosis (CAD) system, the proposed method may assist radiologists in the detection of COPD. It quantifies air trapping in the lungs and thus may assist them with the scoring of the disease by quantifying the severity of the disease.