Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 19 de 19
Filter
1.
Int Immunopharmacol ; 134: 112160, 2024 Jun 15.
Article in English | MEDLINE | ID: mdl-38710117

ABSTRACT

INTRODUCTION: Cholera is a severe gastrointestinal disease that manifests with rapid onset of diarrhea, vomiting, and high mortality rates. Due to its widespread occurrence in impoverished communities with poor water sanitation, there is an urgent demand for a cost-effective and highly efficient vaccine. Multi-epitope vaccines containing dominant immunological epitopes and adjuvant compounds have demonstrated potential in boosting the immune response. MATERIAL AND METHODS: B and T epitopes of OMPU, OMPW, TCPA, CTXA, and CTXB proteins were predicted using bioinformatics methods. Subsequently, highly antigenic multi-epitopes that are non-allergenic and non-toxic were synthesized. These multi-epitopes were then cloned into the pCOMB phagemid. A plasmid M13KO7ΔpIII containing all helper phage proteins except pIII was created to produce the recombinant phage. Female Balb/c mice were divided into three groups and immunized accordingly. The mice received the helper phage, recombinant phage or PBS via gavage feeding thrice within two weeks. Serum samples were collected before and after immunization for the ELISA test as well as evaluating immune system induction through ELISpot testing of spleen lymphocytes. RESULTS: The titer of the recombinant phage was determined to be 1011 PFU/ml. The presence of the recombinant phage was confirmed through differences in optical density between sample and control groups in the ELISA phage technique, as well as by observing transduction activity, which demonstrated successful production of a recombinant phage displaying the Vibrio multi-epitope on M13 phage pIII. ELISA results revealed significant differences in phage antibodies before and after inoculation, particularly notable in the negative control mice. Mice treated with multi-epitope phages exhibited antibodies against Vibrio cholerae lysate. Additionally, ELISpot results indicated activation of cellular immunity in mice receiving both Vibrio and helper phage. CONCLUSION: This study emphasizes the potential of multi-epitope on phage to enhance both cellular and humoral immunity in mice, demonstrating how phages can be used as adjuvants to stimulate mucosal immunity and act as promising candidates for oral vaccination.


Subject(s)
Antibodies, Bacterial , Cholera Vaccines , Cholera , Immunity, Cellular , Immunity, Humoral , Mice, Inbred BALB C , Vibrio cholerae , Animals , Vibrio cholerae/immunology , Female , Cholera/prevention & control , Cholera/immunology , Cholera Vaccines/immunology , Cholera Vaccines/administration & dosage , Administration, Oral , Mice , Antibodies, Bacterial/blood , Epitopes, T-Lymphocyte/immunology , Epitopes, T-Lymphocyte/genetics , Immunization , Epitopes, B-Lymphocyte/immunology , Epitopes, B-Lymphocyte/genetics , Humans , Bacteriophages/immunology , Antigens, Bacterial/immunology , Antigens, Bacterial/genetics
2.
Int Health ; 2024 Feb 16.
Article in English | MEDLINE | ID: mdl-38366720

ABSTRACT

BACKGROUND: The prevalence of obesity and the diversity of available treatments makes the development of a national obesity registry desirable. To do this, it is essential to design a minimal dataset to meet the needs of a registry. This review aims to identify the essential elements of a successful obesity registry. METHODS: We conducted a systematic literature review adhering to the Preferred Reporting Items for Systematic Review and Meta-Analysis recommendations. Google Scholar, Scopus and PubMed databases and Google sites were searched to identify articles containing obesity or overweight registries or datasets of obesity. We included English articles up to January 2023. RESULTS: A total of 82 articles were identified. Data collection of all registries was carried out via a web-based system. According to the included datasets, the important features were as follows: demographics, anthropometrics, medical history, lifestyle assessment, nutritional assessment, weight history, clinical information, medication history, family medical history, prenatal history, quality-of-life assessment and eating disorders. CONCLUSIONS: In this study, the essential features in the obesity registry dataset were demographics, anthropometrics, medical history, lifestyle assessment, nutritional assessment, weight history and clinical analysis items.

3.
BMC Infect Dis ; 23(1): 897, 2023 Dec 21.
Article in English | MEDLINE | ID: mdl-38129798

ABSTRACT

BACKGROUND AND AIM: Coronavirus disease (COVID-19) is an infectious disease that can spread very rapidly with important public health impacts. The prediction of the important factors related to the patient's infectious diseases is helpful to health care workers. The aim of this research was to select the critical feature of the relationship between demographic, biochemical, and hematological characteristics, in patients with and without COVID-19 infection. METHOD: A total of 13,170 participants in the age range of 35-65 years were recruited. Decision Tree (DT), Logistic Regression (LR), and Bootstrap Forest (BF) techniques were fitted into data. Three models were considered in this study, in model I, the biochemical features, in model II, the hematological features, and in model II, both biochemical and homological features were studied. RESULTS: In Model I, the BF, DT, and LR algorithms identified creatine phosphokinase (CPK), blood urea nitrogen (BUN), fasting blood glucose (FBG), total bilirubin, body mass index (BMI), sex, and age, as important predictors for COVID-19. In Model II, our BF, DT, and LR algorithms identified BMI, sex, mean platelet volume (MPV), and age as important predictors. In Model III, our BF, DT, and LR algorithms identified CPK, BMI, MPV, BUN, FBG, sex, creatinine (Cr), age, and total bilirubin as important predictors. CONCLUSION: The proposed BF, DT, and LR models appear to be able to predict and classify infected and non-infected people based on CPK, BUN, BMI, MPV, FBG, Sex, Cr, and Age which had a high association with COVID-19.


Subject(s)
COVID-19 , Humans , Adult , Middle Aged , Aged , SARS-CoV-2 , Algorithms , Data Mining/methods , Bilirubin
4.
Ann Clin Microbiol Antimicrob ; 21(1): 1, 2022 Jan 07.
Article in English | MEDLINE | ID: mdl-34996464

ABSTRACT

BACKGROUND: Widespread misuse of antibiotics caused bacterial resistance increasingly become a serious threat. Bacteriophage therapy promises alternative treatment strategies for combatting drug-resistant bacterial infections. In this study, we isolated and characterized a novel, potent lytic bacteriophage against multi-drug resistant (MDR) Acinetobacter baumannii and described the lytic capability and endolysin activity of the phage to evaluate the potential in phage therapy. METHODS: A novel phage, pIsf-AB02, was isolated from hospital sewage. The morphological analysis, its host range, growth characteristics, stability under various conditions, genomic restriction pattern were systematically investigated. The protein pattern of the phage was analyzed, and the endolysin activity of the phage was determined under the non-denaturing condition on SDS-PAGE. The optimal lytic titer of phage was assessed by co-culture of the phage with clinical MDR A. baumannii isolates. Finally, HeLa cells were used to examine the safety of the phage. RESULTS: The morphological analysis revealed that the pIsf-AB02 phage displays morphology resembling the Myoviridae family. It can quickly destroy 56.3% (27/48) of clinical MDR A. baumannii isolates. This virulent phage could decrease the bacterial host cells (from 108 CFU/ml to 103 CFU/ml) in 30 min. The optimum stability of the phage was observed at 37 °C. pH 7 is the most suitable condition to maintain phage stability. The 15 kDa protein encoded by pIsf-AB02 was detected to have endolysin activity. pIsf-AB02 did not show cytotoxicity to HeLa cells, and it can save HeLa cells from A. baumannii infection. CONCLUSION: In this study, we isolated a novel lytic MDR A. baumannii bacteriophage, pIsf-AB02. This phage showed suitable stability at different temperatures and pHs, and demonstrated potent in vitro endolysin activity. pIsf-AB02 may be a good candidate as a therapeutic agent to control nosocomial infections caused by MDR A. baumannii.


Subject(s)
Acinetobacter baumannii , Bacteriophages , Drug Resistance, Multiple, Bacterial , Acinetobacter Infections/drug therapy , Acinetobacter baumannii/drug effects , HeLa Cells , Humans
5.
Health Inf Manag ; 51(3): 149-158, 2022 Sep.
Article in English | MEDLINE | ID: mdl-33845621

ABSTRACT

BACKGROUND: The quality of data in electronic health records (EHRs) depends on adherence of clinicians to principles of diagnosis documentation. OBJECTIVE: A concept mapping (CM) approach was used to extract factors related to quality of clinicians' documentation that govern EHR data quality. METHOD: Influential factors extracted from brainstorming sessions were sorted by individual participants, followed by a quantitative analysis using multidimensional scaling and cluster analysis to categorise sorted factors. Finally, a questionnaire was used to elicit the importance-feasibility of the extracted factors. Results were visualised by cluster maps and Go-Zone plots. RESULT: Factors were classified into seven clusters: "knowledge about International Classification of Diseases and clinical coding," "need for facilitators and guidelines," "explaining the importance of the issue and defining responsibilities," "cooperation of other personnel," "codify legal requirements," "workload" and "clinical obstacles," as ranked by importance. CONCLUSION: To enhance the quality of EHR data, a collaboration between physicians, nurses, managers and EHR developers is required. CM is an acceptable approach to meet this objective. Our findings highlight the significance of clinical coding knowledge, awareness about its importance and applicability and use of well-structured information systems. In combination, these three factors can have a strong positive impact on the quality of EHR data. IMPLICATIONS: A list of solutions is provided for policymakers, and two interventions suggested, based on the findings of this study, including the adoption of EHRs that incorporate documentation guidelines. We further propose updated clinical training programs and a monitoring and feedback mechanism to facilitate the EHR documentation process.


Subject(s)
Documentation , Physicians , Documentation/methods , Electronic Health Records , Humans , Surveys and Questionnaires , Workload
6.
Arch Iran Med ; 24(5): 397-404, 2021 05 01.
Article in English | MEDLINE | ID: mdl-34196205

ABSTRACT

BACKGROUND: The WHO and UNICEF have suggested pasteurized donor milk (PDM) as the best alternative for infants who do not receive enough milk from their mothers. Objective: This study aimed to assess the short-term outcomes of launching the first mother's milk bank in North-West of Iran. METHODS: The present retrospective study included 366 premature infants (181 pre-launch and 185 post-launch) who were hospitalized in Al-Zahra Hospital of Tabriz, Iran. The study included infants with birth weight ˂2000 g and/or gestation age ˂32 weeks who were born before and after the launch of mother's milk bank. Frequency of necrotizing enterocolitis (NEC), retinopathy of prematurity (ROP), late onset sepsis (LOS) and mortality rate were compared. Data were analyzed using SPSS 23 with the chi-square test, Fisher exact test, independent t test, and logistic regression test. RESULTS: In total, NEC grade ≥2 was reported in 9 cases; 8 cases (4.41%) in pre-launch and one case (0.54%) in post-launch (adjusted OR=0.091; 95% CI=0.010 to 0.849, P=0.035). ROP was reported in 21 cases in two groups. Nineteen cases (10.5%) belonged to the pre-launch group and 2 cases (3.7%) to the post-launch group (adjusted OR=0.105; 95% CI=0.022 to 0.488, P=0.004). LOS was also found in 17 cases (9.39%) in the pre-launch group and 4 cases (2.16%) in the post-launch period, suggesting a significant difference between the two groups (adjusted OR=0.297; 95%CI=0.089 to 0.995, P=0.049). There was no significant difference in mortality of infants during hospitalization between the two groups (P=0.789); however, it was decreased from 15 to 8. CONCLUSION: Launching the human milk bank significantly improved the outcomes of premature infants.


Subject(s)
Milk Banks , Female , Humans , Infant , Infant, Newborn , Infant, Very Low Birth Weight , Intensive Care Units, Neonatal , Milk, Human , Mothers , Retrospective Studies
7.
Int J Health Plann Manage ; 36(5): 1666-1684, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34036611

ABSTRACT

OBJECTIVE: The most important challenge in utilizing medical record codes is the quality of coding data. The present study aims to investigate factors affecting the quality of diagnosis coding from different aspects covering different stakeholders in a multi-dimensional approach. METHODS: First, we used Conventional Content Analysis to maximally gather all effective factors. As such, semi-structured interviews were conducted with medical record coders (N = 32) at the referral hospitals in Mashhad, Iran. Second, 86 hospital staff members from 25 provinces were surveyed using a web-based questionnaire. Finally, a focus group discussion was conducted among coders (N = 18) in different hospitals across the country. RESULTS: In general, the barriers to quality of inpatient record coding can be classified into three categories: (I) physician-related, (II) coder-related, and (III) managerial, financial and administrative factors. CONCLUSION: A triangulation view (related to coders, physicians as well as managerial, financial and administrative dimensions) could be used to identify the barriers affecting the quality of diagnosis coding data. The results of this study may help policymakers in development and implementation of appropriate strategies and effective interventions to improve the quality of clinical coding.


Subject(s)
Clinical Coding , Medical Records , Focus Groups , Hospitals , Humans , Qualitative Research
8.
Res Pharm Sci ; 15(2): 182-190, 2020 Apr.
Article in English | MEDLINE | ID: mdl-32582358

ABSTRACT

BACKGROUND AND PURPOSE: The study was launched to use zinc finger nuclease (ZFN) technology to disrupt the cholera toxin gene (ctxA) for inhibiting CT toxin production in Vibrio cholera (V. cholera). EXPERIMENTAL APPROACH: An engineered ZFN was designed to target the catalytic site of the ctxA gene. The coding sequence of ZFN was cloned to pKD46, pTZ57R T/A vector, and E2-crimson plasmid and transformed to Escherichia coli (E. coli) Top10 and V. cholera. The efficiency of ZFN was evaluated by colony counting. FINDINGS/RESULTS: No expression was observed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and western blotting in transformed E. coli. The ctxA gene sequencing did not show any mutation. Polymerase chain reaction on pKD46-ZFN plasmid had negative results. Transformation of E. coli Top10 with T/A vectors containing whole ZFN sequence led to 7 colonies all of which contained bacteria with self-ligated vector. Transformation with left array ZFN led to 24 colonies of which 6 contained bacteria with self-ligated vector and 18 of them contained bacteria with vector/left array. Transformation of V. cholera with E2-crimson vectors containing whole ZFN did not produce any colonies. Transformation with left array vectors led to 17 colonies containing bacteria with vector/left array. Left array protein band was captured using western blot assay. CONCLUSIONS AND IMPLICATIONS: ZFN might have off target on bacterial genome causing lethal double-strand DNA break due to lack of non-homologous end joining (NHEJ) mechanism. It is recommended to develop ZFNs against bacterial genes, engineered packaging host with NHEJ repair system is essential.

9.
Breastfeed Med ; 15(5): 341-346, 2020 05.
Article in English | MEDLINE | ID: mdl-32091932

ABSTRACT

Objective: Human milk (HM) is the most necessary and complete food for infants and their survival. It is a dynamic system influenced by different factors such as the sex of the infant. The study of the factors affecting the composition of mother's milk can provide us better insight into the nutritional needs of infants with different sex and improve the nutrition of babies who do not have access to HM. This study aimed to study the effects of infant sex on mother's milk composition. Methods: Sixty-one mother's milk samples were collected from mothers with female or male infants and divided into two (32 sons, 29 daughters) groups. The samples were analyzed by the Lacto-Scan milk analyzer and the obtained data were compared between the groups. Results: The results showed that the mean fat content in the milk samples of mothers with female infants (daughters group) (3.42 ± 1.80%) was significantly (p = 0.029) higher than that in mothers with male infants (sons group) (2.53 ± 1.18%). However, the sons group had higher (p = 0.024) levels of salts (0.76 ± 0.14%) compared with the daughters group (0.67 ± 0.18%). There was no significant (p > 0.05) difference in other indices between the groups. Conclusions: The sex of the infant is one of the important factors affecting the composition of mother's milk. The difference in the composition of mother's milk may reflect the differences in metabolic substrate needed for optimal growth and development in female and male infants.


Subject(s)
Breast Feeding , Milk Proteins , Milk, Human/metabolism , Female , Humans , Infant , Infant Nutritional Physiological Phenomena , Male , Milk Proteins/metabolism , Mothers , Nutritional Status , Sex Factors
10.
Int J Med Inform ; 132: 103976, 2019 12.
Article in English | MEDLINE | ID: mdl-31606554

ABSTRACT

INTRODUCTION: There is increasing demand for access to medical information via patients' portals. However, one of the challenges towards widespread utilisation of such service is maintaining the security of those portals. Recent reports show an alarming increase in cyber-attacks using crawlers. These software programs crawl web pages and are capable of executing various commands such as attacking web servers, cracking passwords, harvesting users' personal information, and testing the vulnerability of servers. The aim of this research is to develop a new effective model for detecting malicious crawlers based on their navigational behavior using machine-learning techniques. METHOD: In this research, different methods of crawler detection were investigated. Log files of a sample of compromised web sites were analysed and the best features for the detection of crawlers were extracted. Then after testing and comparing several machine learning algorithms including Support Vector Machine (SVM), Bayesian Network and Decision Tree, the best model was developed using the most appropriate features and its accuracy was evaluated. RESULTS: Our analysis showed the SVM-based models can yield higher accuracy (f-measure = 0.97) comparing to Bayesian Network (f-measure = 0.88) and Decision Tree (f-measure = 0.95) and artificial neural network (ANN) (f-measure = 0.87)for detecting malicious crawlers. However, extracting proper features can increase the performance of the SVM (f-measure = 0.98), the Bayesian network (f-measure = 0.94) and the Decision Tree (f-measure = 0.96) and ANN (f-measure = 0.92). CONCLUSION: Security concerns are among the potential barriers to widespread utilisation of patient portals. Machine learning algorithms can be accurately used to detect malicious crawlers and enhance the security of sensitive patients' information. Selecting appropriate features for the development of these algorithms can remarkably increase their accuracy.


Subject(s)
Bayes Theorem , Computer Security/standards , Internet/standards , Machine Learning , Patient Portals/standards , Algorithms , Decision Trees , Humans , Neural Networks, Computer , Software , Support Vector Machine
11.
Acta Microbiol Immunol Hung ; 66(4): 485-497, 2019 Dec 01.
Article in English | MEDLINE | ID: mdl-31146533

ABSTRACT

Human bocavirus (HBoV) was first characterized in nasopharyngeal aspirates from young children with acute respiratory infections. It is prevalent among children with acute wheezing. This study was carried out in order to analyze the infection frequency and coinfection rates of HBoV with respiratory syncytial virus (RSV) and to perform phylogenetic analysis of HBoV in samples of children with acute respiratory infection in Isfahan, Iran. During the time period 2016-2017, altogether 75 respiratory samples from children hospitalized with acute respiratory infection were collected. The samples were first screened for RSV by direct immunofluorescence method and then subjected to detect HBoV DNA by PCR. Genotyping of HBoV-positive samples was conducted by direct sequencing of PCR products using NP and VP1/VP2 genes. Out of 75 respiratory samples, 20 (26.7%) and 10 (13.3%) were positive for RSV and HBoV, respectively. The coinfection rate was 40% (p = 0.048). Considering the seasonal distribution, winter has the highest extent outbreak (p = 0.036). Sequence analysis of positive samples exhibits that all of the isolated HBoV were related to genotype 1 (HBoV-1) with minimal sequence variations. Increasing frequency of HBoV suggests that the virus is related to acute respiratory infection in children. A single genetic lineage of HBoV1 seems to be the major genotype in Iran.


Subject(s)
Human bocavirus/genetics , Parvoviridae Infections/epidemiology , Phylogeny , Respiratory Tract Infections/virology , Acute Disease/epidemiology , Child, Preschool , Coinfection/epidemiology , Coinfection/virology , Cross-Sectional Studies , Female , Genotype , Human bocavirus/classification , Humans , Infant , Iran/epidemiology , Male , Prevalence , Respiratory Syncytial Virus Infections/epidemiology , Respiratory Tract Infections/epidemiology , Seasons
12.
Stud Health Technol Inform ; 258: 100-104, 2019.
Article in English | MEDLINE | ID: mdl-30942723

ABSTRACT

PACS as a medical imaging technology is an information system that provides quick and convenient access to the medical images, as well as the quick and easy exchange of images and electronic reports among specialists in different departments. The objective of the study was to evaluate the PACS from the point of view of users in hospitals affiliated to Mashhad University of Medical Sciences. The study population consisted of the PACS' users (radiologists and the radiology technologists) in the radiology departments (103 staff). Data were collected through a questionnaire that was designed based on previous studies and published literature. From the views of users, quality of information of PACS had the highest average (Mean = 3.57±1.02), while quality of services had the lowest average (Mean = 2.99±0.19). About the quality of information, the highest and lowest averages were dedicated to information security (Mean = 4±0.69) and quality of pictures (Mean = 3.28±0.87), respectively. Generally, the findings of study indicate that there are problems in different parts of PACS quality in Iran and according to the high cost of purchasing, implementation, maintenance, and updating the PACS in hospitals, proper selection and use of software and hardware as well as proper maintenance of the system may lead to not only return on investment but also provision of telemedicine.


Subject(s)
Developing Countries , Radiology Information Systems , Humans , Iran , Software , Surveys and Questionnaires
13.
ARYA Atheroscler ; 14(2): 53-57, 2018 Mar.
Article in English | MEDLINE | ID: mdl-30108636

ABSTRACT

BACKGROUND: Atherosclerosis and periodontitis are both chronic inflammatory diseases. Although a strong relationship between the two has already been established, the underlying mechanism is unknown. The present study was conducted aiming to detect the deoxyribonucleic acid (DNA) of Aggregatibacter actinomycetemcomitans (A.a), Campylobacter rectus (C.r), and Porphyromonas gingivalis (P.g) in subgingival and atherosclerotic plaques of patients with both chronic periodontitis and cardiovascular disease (CVD). METHODS: In this cross sectional study, patients with coronary artery disease (CAD) and moderate to severe periodontitis which were scheduled for coronary artery bypass grafting (CABG) were enrolled in the study. The subgingival plaques were collected before surgery. All samples were examined for the detection of selected periopathogens using polymerase chain reaction (PCR). RESULTS: The subgingival and atherosclerotic plaque samples of 23 patients were examined. The DNA of P.g, A.a, and C.r were found to be positive in 43.47%, 43.47%, and 78.26% of subgingival plaques, and 13.04%, 17.39%, and 8.69% of atherosclerotic plaques, respectively. In all cases, the bacterial species found in atherosclerotic plaques were also found in the subgingival plaques of the same patient. CONCLUSION: This study demonstrated the presence of periopathogens in atherosclerotic plaques of patients with chronic periodontitis. More studies are required to ascertain the exact role of these periopathogens in atherosclerotic plaque formation.

14.
Curr Alzheimer Res ; 14(9): 1000-1007, 2017.
Article in English | MEDLINE | ID: mdl-28356048

ABSTRACT

OBJECTIVE: Accumulating evidence suggests that the eye can be used in the assessment of early on-set Alzheimer's disease (AD). The eye offers a natural window to the brain through the retina. The retina and brain share common developmental origins and patho-physiological origins and mechanisms, having been sequestered from it during early development, but retaining its connections with the brain via the optic nerve. Therefore, it is well understood that neurological abnormalities have a direct profound impact on the retina. Recent studies suggest an array of physiological and pathological changes in the retina in dementia and specifically in AD. There are also reports on imaging the two hallmark proteins of the disease, extracellular amyloid beta peptides and intracellular hyper phosphorylated tau protein, as a proxy to neuroimaging. RESULTS: In this review, we summarise retinal structural, functional and vascular changes reported to be associated with AD. We also review techniques employed to image these two major hall mark proteins of AD and their relevance for early detection of AD.


Subject(s)
Alzheimer Disease/diagnosis , Alzheimer Disease/pathology , Retina/pathology , Alzheimer Disease/physiopathology , Animals , Humans , Prognosis , Retina/diagnostic imaging , Retina/physiopathology
15.
Eye Contact Lens ; 42(2): 115-9, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26629957

ABSTRACT

OBJECTIVE: To study on antibiotic susceptibility and identify coagulase-negative Staphylococcus (CoNS) species based on tuf gene sequencing from keratitis followed by using soft contact lenses in Isfahan, Iran, 2013. METHODS: This study examined 77 keratitis cases. The samples were cultured and the isolation of CoNS was done by phenotypic tests, and in vitro sensitivity testing was done by Kirby-Bauer disk diffusion susceptibility method. RESULTS: Thirty-eight of isolates were conveniently identified as CoNS. In this study, 27 (71.1%), 21 (55.3%), and 16 (42.1%) were resistant to penicillin, erythromycin, and tetracycline, respectively. One hundred percent of isolates were sensitive to gentamicin, and 36 (94.7%) and 33 (86.8%) of isolates were sensitive to chloramphenicol and ciprofloxacin, respectively. Also, resistances to cefoxitin were 7 (18.4%). Analysis of tuf gene proved to be discriminative and sensitive in which all the isolates were identified with 99.0% similarity to reference strains, and Staphylococcus epidermidis had the highest prevalence among other species. CONCLUSIONS: Results of this study showed that CoNS are the most common agents causing contact lens-associated microbial keratitis, and the tuf gene sequencing analysis is a reliable method for distinguishing CoNS species. Also gentamycin, chloramphenicol, and ciprofloxacin are more effective than the other antibacterial agents against these types of bacteria.


Subject(s)
Anti-Bacterial Agents/pharmacology , Contact Lenses, Hydrophilic/adverse effects , Keratitis/microbiology , Peptide Elongation Factor Tu/genetics , Staphylococcal Infections/microbiology , Staphylococcus , Adult , DNA, Bacterial/genetics , Drug Resistance, Microbial , Female , Genotype , Humans , Keratitis/epidemiology , Keratitis/etiology , Male , Microbial Sensitivity Tests , Middle Aged , Polymerase Chain Reaction/methods , Prevalence , Staphylococcal Infections/epidemiology , Staphylococcal Infections/etiology , Staphylococcus/drug effects , Staphylococcus/genetics , Staphylococcus/isolation & purification , Young Adult
16.
Adv Biomed Res ; 4: 87, 2015.
Article in English | MEDLINE | ID: mdl-26015913

ABSTRACT

BACKGROUND: Since 2003, the incidence of community associated Clostridium difficile infection (CA-CDI) has increased; different types of food have been supposed to be the vectors of C. difficile strains. The purpose of this study is to investigate the occurrence of C. difficile strains in ready-to-eat salads distributed in food services. MATERIALS AND METHODS: A total of 106 ready-made salad specimens were sampled from different restaurants and food services located in Isfahan, in the center of Iran. Positive isolates of C. difficile were identified and confirmed for the existence of three genes including tpi, tcdA and tcdB by multiplex PCR. RESULTS: A total of six (5.66%) samples were positive for C. difficile strains. Of which, one strain (16.6%) was positive for A and B toxins. CONCLUSION: The existence of toxigenic C. difficile in ready-made salads could be a caution for public health. Further investigation is required to assess the relationship between the isolated strains in our study and those from diarrheic patients through molecular typing.

17.
Int Sch Res Notices ; 2014: 185272, 2014.
Article in English | MEDLINE | ID: mdl-27350987

ABSTRACT

Background. Staphylococcus aureus (S. aureus) is one of the most common pathogens that cause hospital- and community-acquired infections in the world. The use of molecular typing methods is essential for determining the origin of the strains, their clonal relations, and also in epidemiological investigations. The purpose of this study was to determine the prevalence of antibiotic resistant S. aureus isolates and using spa, agr, and SCCmec typing to determine the dominant types in Iran. Material and Method. Fifty isolates of S. aureus were collected from January to May 2010. S. aureus identification was performed by biochemical tests. Disk diffusion method was employed to assess the sensitivity of S. aureus strains to antibiotics and then genetic analysis of bacteria was performed using SCCmec, agr, and spa typing. Results. S. aureus resistance to tetracycline, cefoxitin, clindamycin, ciprofloxacin, gentamicin, Cot: cotrimoxazole, levofloxacin, rifampin, and vancomycin were found to be 36%, 18%, 12%, 12%, 22%, 6%, 6%, and 0%, respectively. The results of this study showed that 16% of the isolates were resistant to methicillin (MRSA) and the majority of isolates were SSC mec type IV. In addition spa and agr typing revealed agr typeI and spa type t7688 to be the most predominant. Conclusion. In this study, spa typing showed 100% reliability and the t7688 spa type had a frequency of 26% compared to the frequency of 0.0% in the Ridom SpaServer. The frequency of t304 spa type was higher than the global average.

18.
ISRN Dent ; 2012: 695151, 2012.
Article in English | MEDLINE | ID: mdl-22900196

ABSTRACT

Introduction. The aim of this study was to investigate the effect of three different types of disinfectant agents on alginate impression material after 5 and 10 minutes. Method and Materials. In this in vitro experimental study, 66 circular samples of alginate impression material were contaminated with Staphylococcus aureus, Pseudomonas aeruginosa, and Candida albicans fungus. Except for control samples, all of them were disinfected with sodium hypochlorite 0.525, Deconex, and Epimax by way of spraying. Afterwards, they were kept in plastic bags with humid rolled cotton for 5 and 10 minutes. The number of colonies was counted after 24 and 48 hours for bacteria and after 72 hours for fungus. Statistical Mann-Whitney test was used for data analysis (α = 0.05). Results. After 5 minutes, Epimax showed the highest disinfection action on Staphylococcus aureus as it completely eradicated the bacteria. The disinfection capacity of different agents can be increased as time elapses except for Pseudomonas aeruginosa which was eradicated completely in both 5 and 10 minutes. Conclusion. This study revealed that alginate can be effectively disinfected by three types of disinfecting agents by spraying method, although Epimax showed the highest disinfection action after 10 minutes compared to other agents.

19.
Ann Lab Med ; 32(1): 87-90, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22259785

ABSTRACT

We herein report a case in which the recently characterized species Mycobacterium monacense was isolated from the sputum of an Iranian patient. This case represents the first isolation of M. monacense from Iran. The isolate was identified by conventional and molecular techniques. Our findings show that M. monacense infection is not restricted to developed countries.


Subject(s)
Lung Diseases/microbiology , Mycobacterium Infections/microbiology , Mycobacterium/genetics , Bacterial Proteins/genetics , Chaperonin 60/genetics , Chronic Disease , Female , Humans , Iran , Lung Diseases/diagnosis , Middle Aged , Mycobacterium/classification , Mycobacterium/isolation & purification , Mycobacterium Infections/pathology , Polymerase Chain Reaction , RNA, Ribosomal, 16S/genetics , Sputum/microbiology
SELECTION OF CITATIONS
SEARCH DETAIL
...