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1.
J Exp Bot ; 62(3): 1201-16, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21047983

ABSTRACT

Genes that enable crops to limit Na(+) accumulation in shoot tissues represent potential sources of salinity tolerance for breeding. In barley, the HvNax4 locus lowered shoot Na(+) content by between 12% and 59% (g(-1) DW), or not at all, depending on the growth conditions in hydroponics and a range of soil types, indicating a strong influence of environment on expression. HvNax4 was fine-mapped on the long arm of barley chromosome 1H. Corresponding intervals of ∼200 kb, containing a total of 34 predicted genes, were defined in the sequenced rice and Brachypodium genomes. HvCBL4, a close barley homologue of the SOS3 salinity tolerance gene of Arabidopsis, co-segregated with HvNax4. No difference in HvCBL4 mRNA expression was detected between the mapping parents. However, genomic and cDNA sequences of the HvCBL4 alleles were obtained, revealing a single Ala111Thr amino acid substitution difference in the encoded proteins. The known crystal structure of SOS3 was used as a template to obtain molecular models of the barley proteins, resulting in structures very similar to that of SOS3. The position in SOS3 corresponding to the barley substitution does not participate directly in Ca(2+) binding, post-translational modifications or interaction with the SOS2 signalling partner. However, Thr111 but not Ala111 forms a predicted hydrogen bond with a neighbouring α-helix, which has potential implications for the overall structure and function of the barley protein. HvCBL4 therefore represents a candidate for HvNax4 that warrants further investigation.


Subject(s)
Hordeum/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Quantitative Trait Loci , Sodium/metabolism , Amino Acid Sequence , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Biological Transport , Chromosome Mapping , Hordeum/chemistry , Hordeum/genetics , Molecular Conformation , Molecular Sequence Data , Plant Proteins/chemistry , Sequence Alignment
2.
Structure ; 9(11): 1005-16, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11709165

ABSTRACT

BACKGROUND: Barley beta-D-glucan glucohydrolases represent family 3 glycoside hydrolases that catalyze the hydrolytic removal of nonreducing glucosyl residues from beta-D-glucans and beta-D-glucooligosaccharides. After hydrolysis is completed, glucose remains bound in the active site. RESULTS: When conduritol B epoxide and 2', 4'-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside are diffused into enzyme crystals, they displace the bound glucose and form covalent glycosyl-enzyme complexes through the Odelta1 of D285, which is thereby identified as the catalytic nucleophile. A nonhydrolyzable S-glycosyl analog, 4(I), 4(III), 4(V)-S-trithiocellohexaose, also diffuses into the active site, and a S-cellobioside moiety positions itself at the -1 and +1 subsites. The glycosidic S atom of the S-cellobioside moiety forms a short contact (2.75 A) with the Oepsilon2 of E491, which is likely to be the catalytic acid/base. The glucopyranosyl residues of the S-cellobioside moiety are not distorted from the low-energy 4C(1) conformation, but the glucopyranosyl ring at the +1 subsite is rotated and translated about the linkage. CONCLUSIONS: X-ray crystallography is used to define the three key intermediates during catalysis by beta-D-glucan glucohydrolase. Before a new hydrolytic event begins, the bound product (glucose) from the previous catalytic reaction is displaced by the incoming substrate, and a new enzyme-substrate complex is formed. The second stage of the hydrolytic pathway involves glycosidic bond cleavage, which proceeds through a double-displacement reaction mechanism. The crystallographic analysis of the S-cellobioside-enzyme complex with quantum mechanical modeling suggests that the complex might mimic the oxonium intermediate rather than the enzyme-substrate complex.


Subject(s)
Glucosidases/chemistry , Glucosidases/metabolism , Hordeum/enzymology , Inositol/analogs & derivatives , Catalytic Domain , Crystallography, X-Ray , Cyclohexanols/chemistry , Cyclohexanols/metabolism , Fluorodeoxyglucose F18/chemistry , Fluorodeoxyglucose F18/metabolism , Glucose/chemistry , Glucose/metabolism , Glucosidases/antagonists & inhibitors , Hydrolysis , Inositol/pharmacology , Models, Chemical , Models, Molecular , Peptide Mapping , Quantum Theory
3.
Plant Mol Biol ; 47(1-2): 73-91, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11554481

ABSTRACT

(1-->3),(1-->4)-beta-D-Glucans represent an important component of cell walls in the Poaceae family of higher plants. A number of glycoside endo- and exohydrolases is required for the depolymerization of (1-->3),(1-->4)-beta-D-glucans in germinated grain or for the partial hydrolysis of the polysaccharide in elongating vegetative tissues. The enzymes include (1-->3),(1-->4)-beta-D-glucan endohydrolases (EC 3.2.1.73), which are classified as family 17 glycoside hydrolases, (1-->4)-beta-D-glucan glucohydrolases (family 1) and beta-D-glucan exohydrolases (family 3). Kinetic analyses of hydrolytic reactions enable the definition of action patterns, the thermodynamics of substrate binding, and the construction of subsite maps. Mechanism-based inhibitors and substrate analogues have been used to study the spatial orientation of the substrate in the active sites of the enzymes, at the atomic level. The inhibitors and substrate analogues also allow us to define the catalytic mechanisms of the enzymes and to identify catalytic amino acid residues. Three-dimensional structures of (1-->3),(1-->4)-beta-D-glucan endohydrolases, (1-->4)-beta-D-glucan glucohydrolases and beta-D-glucan exohydrolases are available or can be reliably modelled from the crystal structures of related enzymes. Substrate analogues have been diffused into crystals for solving of the three-dimensional structures of enzyme-substrate complexes. This information provides valuable insights into potential biological roles of the enzymes in the degradation of the barley (1-->3),(1-->4)-beta-D-glucans during endosperm mobilization and in cell elongation.


Subject(s)
Glucan Endo-1,3-beta-D-Glucosidase/metabolism , Plants/enzymology , beta-Glucosidase/metabolism , Cell Wall/metabolism , Glucan 1,4-beta-Glucosidase , Glucan Endo-1,3-beta-D-Glucosidase/chemistry , Glucans/metabolism , Molecular Conformation , Plants/metabolism , Structure-Activity Relationship , beta-Glucosidase/chemistry
4.
Eur J Biochem ; 268(15): 4190-9, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11488912

ABSTRACT

The specificity and kinetics of the interaction between the pathogenesis-related group of thaumatin-like proteins (PR5) in higher plants and (1,3)-beta-D-glucans have been investigated. Two thaumatin-like proteins with 60% amino-acid sequence identity were purified from extracts of germinated barley grain, and were designated HvPR5b and HvPR5c. Purified HvPR5c interacted with insoluble (1,3)-beta-D-glucans, but not with cellulose, pustulan, xylan, chitin or a yeast mannoprotein. Tight binding was observed with unbranched and unsubstituted (1,3)-beta-D-glucans, and weaker binding was seen if (1,6)-beta-linked branch points or beta-glucosyl substituents were present in the substrate. The HvPR5b protein interacted weakly with insoluble (1,3)-beta-D-glucans and did not bind to any of the other polysaccharides tested. This indicated that only specific barley PR5 isoforms interact tightly with (1,3)-beta-D-glucans. The complete primary structures of HvPR5b and HvPR5c were determined and used to construct molecular models of HvPR5b and HvPR5c, based on known three-dimensional structures of related thaumatin-like proteins. The models were examined for features that may be associated with (1,3)-beta-D-glucan binding, and a potential (1,3)-beta-D-glucan-binding region was located on the surface of HvPR5c. No obvious structural features that would prevent binding of (1,3)-beta-D-glucan to HvPR5b were identified, but several of the amino acids in HvPR5c that are likely to interact with (1,3)-beta-D-glucans are not present in HvPR5b.


Subject(s)
Glucans/chemistry , Hordeum/chemistry , Plant Proteins/chemistry , Sweetening Agents , beta-Glucans , Adsorption , Amino Acid Sequence , Binding Sites , DNA, Complementary/metabolism , Glucans/metabolism , Hydrogen-Ion Concentration , Kinetics , Models, Molecular , Molecular Sequence Data , Plant Proteins/metabolism , Polysaccharides/chemistry , Protein Binding , Protein Structure, Secondary , Sequence Homology, Amino Acid , Time Factors
5.
Biochem J ; 356(Pt 1): 181-9, 2001 May 15.
Article in English | MEDLINE | ID: mdl-11336650

ABSTRACT

A family 51 arabinoxylan arabinofuranohydrolase, designated AXAH-I, has been purified from extracts of 7-day-old barley (Hordeum vulgare L.) seedlings by fractional precipitation with (NH(4))(2)SO(4) and ion-exchange chromatography. The enzyme has an apparent molecular mass of 65 kDa and releases L-arabinose from cereal cell wall arabinoxylans with a pH optimum of 4.3, a catalytic rate constant (k(cat)) of 6.9 s(-1) and a catalytic efficiency factor (k(cat)/K(m)) of 0.76 (ml x s(-1) x mg(-1)). Whereas the hydrolysis of alpha-L-arabinofuranosyl residues linked to C(O)3 of backbone (1-->4)-beta-xylosyl residues proceeds at the fastest rate, alpha-L-arabinofuranosyl residues on doubly substituted xylosyl residues are also hydrolysed, at lower rates. A near full-length cDNA encoding barley AXAH-I indicates that the mature enzyme consists of 626 amino acid residues and has a calculated pI of 4.8. A second cDNA, which is 81% identical with that encoding AXAH-I, encodes another barley AXAH, which has been designated AXAH-II. The barley AXAHs are likely to have key roles in wall metabolism in cereals and other members of the Poaceae. Thus the enzymes could participate in the modification of the fine structure of arabinoxylan during wall deposition, maturation or expansion, or in wall turnover and the hydrolysis of arabinoxylans in germinated grain.


Subject(s)
Glycoside Hydrolases/genetics , Hordeum/enzymology , Amino Acid Sequence , DNA, Complementary/genetics , Evolution, Molecular , Glycoside Hydrolases/classification , Glycoside Hydrolases/isolation & purification , Glycoside Hydrolases/metabolism , Isoenzymes/genetics , Isoenzymes/metabolism , Kinetics , Molecular Sequence Data , Sequence Analysis, Protein , Sequence Homology, Amino Acid , Substrate Specificity
7.
Proteins ; 41(2): 257-69, 2000 Nov 01.
Article in English | MEDLINE | ID: mdl-10966578

ABSTRACT

There are approximately 100 known members of the family 3 group of glycoside hydrolases, most of which are classified as beta-glucosidases and originate from microorganisms. The only family 3 glycoside hydrolase for which a three-dimensional structure is available is a beta-glucan exohydrolase from barley. The structural coordinates of the barley enzyme is used here to model representatives from distinct phylogenetic clusters within the family. The majority of family 3 hydrolases have an NH(2)-terminal (alpha/beta)(8) barrel connected by a short linker to a second domain, which adopts an (alpha/beta)(6) sandwich fold. In two bacterial beta-glucosidases, the order of the domains is reversed. The catalytic nucleophile, equivalent to D285 of the barley beta-glucan exohydrolase, is absolutely conserved across the family. It is located on domain 1, in a shallow site pocket near the interface of the domains. The likely catalytic acid in the barley enzyme, E491, is on domain 2. Although similarly positioned acidic residues are present in closely related members of the family, the equivalent amino acid in more distantly related members is either too far from the active site or absent. In the latter cases, the role of catalytic acid is probably assumed by other acidic amino acids from domain 1.


Subject(s)
Glycoside Hydrolases/chemistry , Amino Acid Sequence , Catalytic Domain , Cellulase/chemistry , Cellulose 1,4-beta-Cellobiosidase , Conserved Sequence , Evolution, Molecular , Models, Molecular , Molecular Sequence Data , Phylogeny , Sequence Alignment , beta-Glucosidase/chemistry
8.
Structure ; 7(2): 179-90, 1999 Feb 15.
Article in English | MEDLINE | ID: mdl-10368285

ABSTRACT

BACKGROUND: Cell walls of the starchy endosperm and young vegetative tissues of barley (Hordeum vulgare) contain high levels of (1-->3,1-->4)-beta-D-glucans. The (1-->3,1-->4)-beta-D-glucans are hydrolysed during wall degradation in germinated grain and during wall loosening in elongating coleoptiles. These key processes of plant development are mediated by several polysaccharide endohydrolases and exohydrolases. RESULTS: . The three-dimensional structure of barley beta-D-glucan exohydrolase isoenzyme ExoI has been determined by X-ray crystallography. This is the first reported structure of a family 3 glycosyl hydrolase. The enzyme is a two-domain, globular protein of 605 amino acid residues and is N-glycosylated at three sites. The first 357 residues constitute an (alpha/beta)8 TIM-barrel domain. The second domain consists of residues 374-559 arranged in a six-stranded beta sandwich, which contains a beta sheet of five parallel beta strands and one antiparallel beta strand, with three alpha helices on either side of the sheet. A glucose moiety is observed in a pocket at the interface of the two domains, where Asp285 and Glu491 are believed to be involved in catalysis. CONCLUSIONS: The pocket at the interface of the two domains is probably the active site of the enzyme. Because amino acid residues that line this active-site pocket arise from both domains, activity could be regulated through the spatial disposition of the domains. Furthermore, there are sites on the second domain that may bind carbohydrate, as suggested by previously published kinetic data indicating that, in addition to the catalytic site, the enzyme has a second binding site specific for (1-->3, 1-->4)-beta-D-glucans.


Subject(s)
Glucans/metabolism , Hordeum/enzymology , beta-Glucans , beta-Glucosidase/chemistry , Amino Acid Sequence , Binding Sites , Carbohydrate Sequence , Crystallography, X-Ray , Glucan 1,3-beta-Glucosidase , Glucose/chemistry , Glycosylation , Isoenzymes/chemistry , Models, Molecular , Molecular Sequence Data , Oligosaccharides/chemistry , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary
9.
Plant Physiol ; 119(3): 859-71, 1999 Mar.
Article in English | MEDLINE | ID: mdl-10069825

ABSTRACT

The single gene encoding limit dextrinase (pullulan 6-glucanohydrolase; EC 3.2.1.41) in barley (Hordeum vulgare) has 26 introns that range in size from 93 to 822 base pairs. The mature polypeptide encoded by the gene has 884 amino acid residues and a calculated molecular mass of 97,417 D. Limit dextrinase mRNA is abundant in gibberellic acid-treated aleurone layers and in germinated grain. Gibberellic acid response elements were found in the promoter region of the gene. These observations suggest that the enzyme participates in starch hydrolysis during endosperm mobilization in germinated grain. The mRNA encoding the enzyme is present at lower levels in the developing endosperm of immature grain, a location consistent with a role for limit dextrinase in starch synthesis. Enzyme activity was also detected in developing grain. The limit dextrinase has a presequence typical of transit peptides that target nascent polypeptides to amyloplasts, but this would not be expected to direct secretion of the mature enzyme from aleurone cells in germinated grain. It remains to be discovered how the enzyme is released from the aleurone and whether another enzyme, possibly of the isoamylase group, might be equally important for starch hydrolysis in germinated grain.


Subject(s)
Genes, Plant , Glycoside Hydrolases/genetics , Hordeum/enzymology , Hordeum/genetics , Amino Acid Sequence , Base Sequence , DNA Primers/genetics , DNA, Complementary/genetics , DNA, Complementary/isolation & purification , DNA, Plant/genetics , DNA, Plant/isolation & purification , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Plant , Germination , Glycoside Hydrolases/chemistry , Glycoside Hydrolases/metabolism , Hordeum/growth & development , Introns , Molecular Sequence Data , Phylogeny , Promoter Regions, Genetic , Reverse Transcriptase Polymerase Chain Reaction , Seeds/enzymology , Seeds/growth & development , Sequence Homology, Amino Acid
10.
Acta Crystallogr D Biol Crystallogr ; 54(Pt 4): 687-9, 1998 Jul 01.
Article in English | MEDLINE | ID: mdl-9761876

ABSTRACT

Crystals of a beta-glucan exohydrolase purified from extracts of young barley seedlings have been obtained by vapour diffusion in the presence of ammonium sulfate and polyethylene glycol. The enzyme exhibits broad substrate specificity against (1,3)-, (1,3;1,4)- and (1,3;1,6)-beta-glucans, and related oligosaccharides. Crystal dimensions of up to 0.8 x 0.4 x 0.6 mm have been observed. The crystals belong to the tetragonal space group P41212 or P43212. Cell parameters are a = b = 102.1 and c = 184.5 A, and there appear to be eight molecules in the asymmetric unit. The crystals diffract to at least 2.2 A resolution using X-rays from a rotating-anode generator.


Subject(s)
Hordeum/enzymology , Isoenzymes/chemistry , Plant Proteins/chemistry , beta-Glucosidase/chemistry , Crystallization , Crystallography, X-Ray , Glucan 1,3-beta-Glucosidase , Isoenzymes/isolation & purification , Plant Proteins/isolation & purification , Protein Conformation , beta-Glucosidase/isolation & purification
11.
J Biol Chem ; 273(18): 11134-43, 1998 May 01.
Article in English | MEDLINE | ID: mdl-9556600

ABSTRACT

A beta-glucosidase, designated isoenzyme betaII, from germinated barley (Hordeum vulgare L.) hydrolyzes aryl-beta-glucosides and shares a high level of amino acid sequence similarity with beta-glucosidases of diverse origin. It releases glucose from the non-reducing termini of cellodextrins with catalytic efficiency factors, kcat/Km, that increase approximately 9-fold as the degree of polymerization of these substrates increases from 2 to 6. Thus, the enzyme has a specificity and action pattern characteristic of both beta-glucosidases (EC 3.2.1.21) and the polysaccharide exohydrolase, (1,4)-beta-glucan glucohydrolase (EC 3.2.1.74). At high concentrations (100 mM) of 4-nitrophenyl beta-glucoside, beta-glucosidase isoenzyme betaII catalyzes glycosyl transfer reactions, which generate 4-nitrophenyl-beta-laminaribioside, -cellobioside, and -gentiobioside. Subsite mapping with cellooligosaccharides indicates that the barley beta-glucosidase isoenzyme betaII has six substrate-binding subsites, each of which binds an individual beta-glucosyl residue. Amino acid residues Glu181 and Glu391 are identified as the probable catalytic acid and catalytic nucleophile, respectively. The enzyme is a family 1 glycoside hydrolase that is likely to adopt a (beta/alpha)8 barrel fold and in which the catalytic amino acid residues appear to be located at the bottom of a funnel-shaped pocket in the enzyme.


Subject(s)
Hordeum/enzymology , beta-Glucosidase/metabolism , Amino Acid Sequence , Catalysis , Crystallography, X-Ray , Glucan 1,4-beta-Glucosidase , Kinetics , Models, Chemical , Molecular Sequence Data , Peptide Mapping , Substrate Specificity , beta-Glucosidase/chemistry
12.
Int J Biol Macromol ; 21(1-2): 67-72, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9283018

ABSTRACT

Cell wall degradation is an important event during endosperm mobilization in the germinated barley grain. A battery of polysaccharide and oligosaccharide hydrolases is required for the complete depolymerization of the arabinoxylans and (1 --> 3,1 --> 4)-beta-glucans which comprise in excess of 90% by weight of these walls. The (1 --> 3,1 --> 4)-beta-glucan endohydrolases release oligosaccharides from their substrate and are probably of central importance for the initial solubilization of the (1 --> 3,1 --> 4)-beta-glucans, but beta-glucan exohydrolases and beta-glucosidases may be important additional enzymes for the conversion of released oligosaccharides to glucose. The latter enzymes have recently been purified from germinated barley and characterized. There is an increasing body of evidence to support the notion that the (1 --> 3,1 --> 4)-beta-glucan endohydrolases from germinated barley evolved from the pathogenesis-related (1 --> 3)-beta-glucanases which are widely distributed in plants and which hydrolyse polysaccharides that are abundant in fungal cell walls. Arabinoxylan depolymerization is also mediated by a family of enzymes, but these are less well characterized. (1 --> 4)-beta-Xylan endohydrolases have been purified and the corresponding cDNAs and genes isolated. While the presence of (1 --> 4)-beta-xylan exohydrolases and alpha-L-arabinofuranosidases has been reported many times, the enzymes have not yet been studied in detail. Here, recent advances in the enzymology and physiology of cell wall degradation in the germinated barley grain are briefly reviewed.


Subject(s)
Fungi/enzymology , Glycoside Hydrolases/chemistry , Glycoside Hydrolases/physiology , Hordeum/enzymology , Plants/enzymology , beta-Glucans , Carbohydrate Sequence , Cell Wall/metabolism , Evolution, Molecular , Fungi/metabolism , Glucans/metabolism , Hydrolysis , Molecular Sequence Data , Plant Development , Xylans/metabolism
13.
Carbohydr Res ; 297(4): 365-74, 1997 Feb 14.
Article in English | MEDLINE | ID: mdl-9076936

ABSTRACT

A (1-->3)-beta-glucanase with an apparent M(r) of 29,000 and an isoelectric point of 4.0 has been purified 2000-fold from extracts of rice bran, using fractional precipitation with ammonium sulfate, anion exchange chromatography, size-exclusion chromatography, chromatofocussing, and hydrophobic interaction chromatography. The enzyme can be classified with the EC 3.2.1.39 group, because it releases laminarabiose and higher laminara-oligosaccharides from linear (1-->3)-beta-D-glucans with an action pattern that is typical of (1-->3)-beta-D-glucan endohydrolases. However, the introduction of substituents or branching in the (1-->3)-beta-D-glucan substrates causes a marked decrease in the rate of hydrolysis. Thus, substituted or branched (1-->3)-beta-D-glucans of the kind commonly found in fungal cell walls are less susceptible to hydrolysis than essentially linear (1-->3)-beta-D-glucans. Kinetic analyses indicate an apparent Km of 42 microM, a kcat constant of 67 s-1, and a pH optimum of 5.0 during hydrolysis of the (1-->3)-beta-D-glucan, laminaran, from Laminaria digitata. The first 60 NH2-terminal amino acid residues of the purified rice (1-->3)-beta-glucanase contain blocks of amino acids that are conserved in other cereal (1-->3)-beta-glucanases. Although the precise tissue location and function of the enzyme in rice bran are not known, it is likely that it is concentrated in the aleurone layer and that it plays a preemptive role in the protection of ungerminated grain against pathogen attack.


Subject(s)
Glucan Endo-1,3-beta-D-Glucosidase/isolation & purification , Glucan Endo-1,3-beta-D-Glucosidase/metabolism , Oryza/enzymology , Carbohydrate Conformation , Carbohydrate Sequence , Chromatography, Gel , Chromatography, Ion Exchange , Chromatography, Thin Layer , Conserved Sequence , Disaccharides/metabolism , Electrophoresis, Polyacrylamide Gel , Enzyme Stability , Glucan Endo-1,3-beta-D-Glucosidase/chemistry , Glucans/metabolism , Hydrogen-Ion Concentration , Hydrolysis , Kinetics , Molecular Sequence Data , Polysaccharides/metabolism , Sequence Alignment , Sequence Analysis , Temperature
14.
J Biol Chem ; 271(9): 5277-86, 1996 Mar 01.
Article in English | MEDLINE | ID: mdl-8617814

ABSTRACT

Two beta-glucan exohydrolases of apparent molecular masses 69,000 and 71,000 Da have been purified from extracts of 8-day germinated barley grains and are designated isoenzymes ExoI and ExoII, respectively. The sequences of their first 52 NH2-terminal amino acids show 64% positional identity. Both enzymes hydrolyze the (1,3)-beta-glucan, laminarin, but also hydrolyze (1,3;1,4)-beta-glucan and 4-nitrophenyl beta-D-glucoside. The complete sequence of 602 amino acid residues of the mature beta-glucan exohydrolase isoenzyme ExoII has been deduced by nucleotide sequence analysis of a near full-length cDNA. Two other enzymes of apparent molecular mass 62,000 Da, designated betaI and betaII, were also purified from the extracts. Their amino acid sequences are similar to enzymes classified as beta-glucosidases and although they hydrolyze 4-nitrophenyl beta-glucoside, their substrate specificities and action patterns are more typical of polysaccharide exohydrolases of the (1,4)-beta-glucan glucohydrolase type. Both the beta-glucan exohydrolase isoenzyme ExoI and the beta-glucosidase isoenzyme betaII release single glucosyl residues from the nonreducing ends of substrates and proton-NMR shows that anomeric configurations are retained during hydrolysis by both classes of enzyme. These results raise general questions regarding the distinction between polysaccharide exohydrolases and glucosidases, together with more specific questions regarding the functional roles of the two classes of enzyme in germinating barley grain.


Subject(s)
Glycoside Hydrolases/isolation & purification , Glycoside Hydrolases/metabolism , Hordeum/enzymology , beta-Glucosidase/isolation & purification , beta-Glucosidase/metabolism , Amino Acid Sequence , Base Sequence , Carbohydrate Sequence , Cellulose 1,4-beta-Cellobiosidase , Chromatography, DEAE-Cellulose , Chromatography, Gel , Chromatography, Ion Exchange , Chromatography, Thin Layer , Cloning, Molecular , DNA, Complementary , Gene Library , Glycoside Hydrolases/chemistry , Isoenzymes/chemistry , Isoenzymes/isolation & purification , Isoenzymes/metabolism , Kinetics , Magnetic Resonance Spectroscopy , Molecular Sequence Data , Oligodeoxyribonucleotides , Oligosaccharides/chemistry , Oligosaccharides/metabolism , Peptide Fragments/chemistry , Peptide Fragments/isolation & purification , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Substrate Specificity , beta-Glucosidase/chemistry
15.
J Biol Chem ; 270(24): 14556-63, 1995 Jun 16.
Article in English | MEDLINE | ID: mdl-7782319

ABSTRACT

Oligo-1,3-beta-glucosides with degrees of polymerization of 2-9 were labeled at their reducing terminal residues by catalytic tritiation. These substrates were used in detailed kinetic and thermodynamic analyses to examine substrate binding in 1,3-beta-D-glucan glucanohydrolase (EC 3.2.1.39) isoenzymes GI, GII, and GIII from young seedlings of barley (Hordeum vulgare). Bond-cleavage frequencies, together with the kinetic parameter kcat/Km, have been calculated as a function of substrate chain length to define the number of subsites that accommodate individual beta-glucosyl residues and to estimate binding energies at each subsite. Each isoenzyme has eight beta-glucosyl-binding subsites. The catalytic amino acids are located between the third and fourth subsite from the nonreducing terminus of the substrate. Negative binding energies in subsites adjacent to the hydrolyzed glycosidic linkage suggest that some substrate distortion may occur in this region during binding and that the resultant strain induced in the substrate might facilitate hydrolytic cleavage. If the 1,3-beta-glucanases exert their function as pathogenesis-related proteins by hydrolyzing the branched or substituted 1,3;1,6-beta-glucans of fungal walls, it is clear that relatively extended regions of the cell wall polysaccharide must fit into the substrate-binding cleft of the enzyme.


Subject(s)
Amino Acids/metabolism , Hordeum/enzymology , beta-Glucosidase/metabolism , Catalysis , Glucan 1,3-beta-Glucosidase , Hordeum/microbiology , Hydrolysis , Kinetics , Models, Molecular , Substrate Specificity , Thermodynamics , beta-Glucosidase/chemistry
17.
Biochem J ; 289 ( Pt 2): 453-61, 1993 Jan 15.
Article in English | MEDLINE | ID: mdl-8424790

ABSTRACT

Three (1-->3)-beta-D-glucan glucanohydrolase (EC 3.2.1.39) isoenzymes GI, GII and GIII were purified from young leaves of barley (Hordeum vulgare) using (NH4)2SO4 fractional precipitation, ion-exchange chromatography, chromatofocusing and gel-filtration chromatography. The three (1-->3)-beta-D-glucanases are monomeric proteins of apparent M(r)32,000 with pI values in the range 8.8-10.3. N-terminal amino-acid-sequence analyses confirmed that the three isoenzymes represent the products of separate genes. Isoenzymes GI and GII are less stable at elevated temperatures and are active over a narrower pH range than is isoenzyme GIII, which is a glycoprotein containing 20-30 mol of hexose equivalents/mol of enzyme. The preferred substrate for the enzymes is laminarin from the brown alga Laminaria digitata, an essentially linear (1-->3)-beta-D-glucan with a low degree of glucosyl substitution at 0-6 and a degree of polymerization of approx. 25. The three enzymes are classified as endohydrolases, because they yield (1-->3)-beta-D-oligoglucosides with degrees of polymerization of 3-8 in the initial stages of hydrolysis of laminarin. Kinetic analyses indicate apparent Km values in the range 172-208 microM, kcat. constants of 36-155 s-1 and pH optima of 4.8. Substrate specificity studies show that the three isoenzymes hydrolyse substituted (1-->3)-beta-D-glucans with degrees of polymerization of 25-31 and various high-M(r), substituted and side-branched fungal (1-->3;1-->6)-beta-D-glucans. However, the isoenzymes differ in their rates of hydrolysis of a (1-->3;1-->6)-beta-D-glucan from baker's yeast and their specific activities against laminarin vary significantly. The enzymes do not hydrolyse (1-->3;1-->4)-beta-D-glucans, (1-->6)-beta-D-glucan, CM-cellulose, insoluble (1-->3)-beta-D-glucans or aryl beta-D-glycosides.


Subject(s)
Hordeum/enzymology , Isoenzymes/isolation & purification , Isoenzymes/metabolism , beta-Glucosidase/isolation & purification , beta-Glucosidase/metabolism , Amino Acid Sequence , Carbohydrate Conformation , Carbohydrate Sequence , Chromatography, DEAE-Cellulose , Chromatography, Gel , Chromatography, Ion Exchange , Enzyme Stability , Glucan 1,3-beta-Glucosidase , Kinetics , Molecular Sequence Data , Molecular Weight , Substrate Specificity , Thermodynamics
18.
J Gen Microbiol ; 137(3): 541-7, 1991 Mar.
Article in English | MEDLINE | ID: mdl-2033377

ABSTRACT

Synthetic heterodisaccharides composed of glucose and xylose were tested as inducers of cellulose- and xylan-degrading enzymes in Aspergillus terreus, and the inducing abilities were compared with those of sophorose and xylobiose or their positional isomers. Measurement of secreted and cell-associated enzyme activities revealed that the heterodisaccharides induced the synthesis of the cellulolytic and xylanolytic enzymes, 2-O-beta-D-glucopyranosyl D-xylose (Glcbeta 1-2Xyl) being the most powerful inducer. Sophorose and 2-O-beta-D-xylopyranosyl D-Xylose (Xylbeta 1-2Xyl), or their positional isomers, selectively induced the synthesis of cellulases and beta-xylanases, respectively. An analysis of the extracellular enzymes (which were separated by isoelectric focusing followed by detection using chromogenic and fluorogenic substrates) showed that Glcbeta 1-2Xyl initiated the synthesis of specific endo-1,4-beta-glucanases and specific endo-1,4-beta-xylanases identical to those produced separately in response to sophorose or Xylbeta 1-2Xyl. Glcbeta 1-2Xyl also induced specific endo-1,4-beta-glucanases that hydrolysed 4-methylumbelliferyl beta-lactoside at the agluconic bond. The results strengthen the concept of separate regulatory control of the synthesis of cullulases and beta-xylanases. The results also suggest that mixed disaccharides, composed of glucose and xylose moieties, which may occur in nature, could play an important role in regulating the synthesis of wood-degrading enzymes.


Subject(s)
Aspergillus/enzymology , Cellulose/metabolism , Disaccharides/metabolism , Glucose/metabolism , Glycoside Hydrolases/metabolism , Xylans/metabolism , Xylose/metabolism , Carbohydrate Sequence , Cellulase/metabolism , Enzyme Activation , Molecular Sequence Data , Xylan Endo-1,3-beta-Xylosidase
19.
Folia Microbiol (Praha) ; 32(3): 216-25, 1987.
Article in English | MEDLINE | ID: mdl-3114105

ABSTRACT

Phenylhydrazonopropanedinitrile, a model uncoupler of oxidative phosphorylation, was used in studies of metabolic and physiological consequences of uncoupling at the cellular level in Candida albicans. Concentrations stimulating respiration induce a faster glucose consumption at a practically unchanged respiratory coefficient. The extracellular production of acids is also without significant changes. When applying higher concentrations of the uncoupler respiration was inhibited, similarly to glucose consumption and acid production. This fact is due to nonspecific interactions of the alkylation type with mercapto groups of functional proteins. Phenylhydrazonopropanedinitrile influences energy-generating processes resulting in slowing down or interruption of biosynthetic processes and occasionally even growth of Candida albicans.


Subject(s)
Candida albicans/drug effects , Carbonyl Cyanide m-Chlorophenyl Hydrazone/pharmacology , Nitriles/pharmacology , Oxidative Phosphorylation/drug effects , Oxygen Consumption/drug effects , Uncoupling Agents/pharmacology , Candida albicans/growth & development , Candida albicans/metabolism , Carbon Dioxide/metabolism , Carbonyl Cyanide m-Chlorophenyl Hydrazone/analogs & derivatives , Glucose/metabolism , Hydrogen-Ion Concentration
20.
Z Allg Mikrobiol ; 23(5): 303-12, 1983.
Article in English | MEDLINE | ID: mdl-6353783

ABSTRACT

Growth of Candida albicans on artificial D-glucose derivatives (amino-, methyl-, acylglycosides and N-acetyl-D-glucosamine derivatives) was examined with the aim to find new inducers of the mycelial growth form. For representatives of particular groups (alpha-D-glucopyranosylamine, D-glucose and N-acetyl-D-glucosamine) some physiological (growth, doubling time, specific growth rate, oxygen uptake and CO2 production, respiration quotients), biochemical (dry weight yield, protein content, ethanol production), and morphological parameters (length-width quotient, volume, percentage of budding cells) of cultures in different growth phases were determined with regard to the type and concentration of carbon source. The results obtained may be valuable for studies of the structure-utilization relationships of carbohydrate derivatives as well as for the elucidation of yeast-mycelial transition in Candida albicans induced by unphysiological hexoses degradable intracellularly.


Subject(s)
Candida albicans/growth & development , Glucose/analogs & derivatives , Culture Media , Glucose/metabolism
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