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1.
Anal Methods ; 2024 Jun 03.
Article in English | MEDLINE | ID: mdl-38828983

ABSTRACT

The pollutant o-aminophenol (o-AP) presents considerable risk to environmental safety, and its detection is therefore critical. Although various optical and electrochemical methods have been proposed for the detection of o-AP, there are a limited number of detection methods based on photoelectrochemical (PEC) sensors. In this study, a sensitive visible-light-driven PEC sensor was developed for o-AP detection in water. A conjugated microporous polymer (CMP)-coated graphene heterostructure (CMP-rGO) was synthesized and used to develop a PEC sensor. Under optimal conditions, the proposed sensor exhibited a high sensitivity of 0.03 µM with a wide linear range of 0.0034-37.6 µM. The PEC sensor also displayed acceptable repeatability and reproducibility, good long-term stability, and excellent recovery (98-102%). In addition, the binding patterns of CMP to o-AP and o-AP analog molecules were analyzed by molecular docking. Therefore, this study provides a new and feasible PEC sensor-based detection scheme for o-AP detection.

2.
J Transl Med ; 22(1): 546, 2024 Jun 07.
Article in English | MEDLINE | ID: mdl-38849907

ABSTRACT

BACKGROUND: The pathogenesis of thyroid-associated orbitopathy (TAO) remains incompletely understand. The interaction between immunocytes and orbital fibroblasts (OFs) play a critical role in orbital inflammatory and fibrosis. Accumulating reports indicate that a significant portion of plasma exosomes (Pla-Exos) are derived from immune cells; however, their impact upon OFs function is unclear. METHODS: OFs were primary cultured from inactive TAO patients. Exosomes isolated from plasma samples of patients with active TAO and healthy controls (HCs) were utilized for functional and RNA cargo analysis. Functional analysis in thymocyte differentiation antigen-1+ (Thy-1+) OFs measured expression of inflammatory and fibrotic markers (mRNAs and proteins) and cell activity in response to Pla-Exos. RNA cargo analysis was performed by RNA sequencing and RT-qPCR. Thy-1+ OFs were transfected with miR-144-3p mimics/inhibitors to evaluate its regulation of inflammation, fibrosis, and proliferation. RESULTS: Pla-Exos derived from active TAO patients (Pla-ExosTAO-A) induced stronger production of inflammatory cytokines and hyaluronic acid (HA) in Thy-1+ OFs while inhibiting their proliferation. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis and single sample gene set enrichment analysis (ssGSEA) suggested that the difference in mRNA expression levels between Pla-ExosTAO-A and Pla-ExosHC was closely related to immune cells. Differential expression analysis revealed that 62 upregulated and 45 downregulated miRNAs in Pla-ExosTAO-A, with the elevation of miR-144-3p in both Pla-Exos and PBMCs in active TAO group. KEGG analysis revealed that the target genes of differentially expressed miRNA and miR-144-3p enriched in immune-related signaling pathways. Overexpression of the miR-144-3p mimic significantly upregulated the secretion of inflammatory cytokines and HA in Thy-1+ OFs while inhibiting their proliferation. CONCLUSION: Pla-Exos derived from patients with active TAO were immune-active, which may be a long-term stimulus casual for inflammatory and fibrotic progression of TAO. Our finding suggests that Pla-Exos could be used as biomarkers or treatment targets in TAO patients.


Subject(s)
Exosomes , Fibroblasts , Fibrosis , Graves Ophthalmopathy , Inflammation , MicroRNAs , Orbit , Humans , Exosomes/metabolism , Graves Ophthalmopathy/pathology , Graves Ophthalmopathy/blood , Graves Ophthalmopathy/genetics , MicroRNAs/genetics , MicroRNAs/metabolism , MicroRNAs/blood , Fibroblasts/metabolism , Fibroblasts/pathology , Orbit/pathology , Inflammation/pathology , Female , Male , Cell Proliferation , Middle Aged , Adult , Hyaluronic Acid/blood , Hyaluronic Acid/metabolism , Cytokines/metabolism , Thy-1 Antigens/metabolism
3.
Sci Rep ; 14(1): 10330, 2024 05 06.
Article in English | MEDLINE | ID: mdl-38710804

ABSTRACT

Climate change has significantly influenced the growth and distribution of plant species, particularly those with a narrow ecological niche. Understanding climate change impacts on the distribution and spatial pattern of endangered species can improve conservation strategies. The MaxEnt model is widely applied to predict species distribution and environmental tolerance based on occurrence data. This study investigated the suitable habitats of the endangered Ormosia microphylla in China and evaluated the importance of bioclimatic factors in shaping its distribution. Occurrence data and environmental variables were gleaned to construct the MaxEnt model, and the resulting suitable habitat maps were evaluated for accuracy. The results showed that the MaxEnt model had an excellent simulation quality (AUC = 0.962). The major environmental factors predicting the current distribution of O. microphylla were the mean diurnal range (bio2) and precipitation of the driest month (bio14). The current core potential distribution areas were concentrated in Guangxi, Fujian, Guizhou, Guangdong, and Hunan provinces in south China, demonstrating significant differences in their distribution areas. Our findings contribute to developing effective conservation and management measures for O. microphylla, addressing the critical need for reliable prediction of unfavorable impacts on the potential suitable habitats of the endangered species.


Subject(s)
Conservation of Natural Resources , Ecosystem , Endangered Species , China , Conservation of Natural Resources/methods , Climate Change , Trees
4.
Int Ophthalmol ; 43(12): 4443-4450, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37875682

ABSTRACT

PURPOSE: To determine the accuracy of manual compass measurement and trigonometric determination of proptosis (MCMATDP). METHODS: This agreement study included 120 eyes without eye diseases or injury of 60 patients who visited the ophthalmic clinic of Peking University Shenzhen Hospital from February 2020 to June 2020. The absolute values of proptosis were measured by MCMATDP and computed tomography (CT). The differences between the two methods were shown by Bland-Altman plot. RESULTS: The cohort comprised 25 males and 35 females (average age 38.3 years). The absolute value of proptosis measured by CT was correlated with the MCMATDP. Further analysis showed that a 95% limit of agreement (LoA) was - 0.53 to 0.60 mm in the right eye and - 0.46 to 0.55 mm in the left eye between CT and MCMATDP. In addition, the 95% LoA was - 0.49 to 0.60 mm in both eyes between the two methods. All points were < 5% in Bland-Altman plots. CONCLUSIONS: Compared to CT, MCMATDP is rather consistent in proptosis measurement. The new method is feasible in clinical practice when measuring proptosis. With the development of non-contact intelligent measurement software and the continuous improvement in measurement accuracy, a non-invasive, simple, and inexpensive measurement mode is true based on the theory of MCMATDP.


Subject(s)
Exophthalmos , Male , Female , Humans , Adult , Exophthalmos/diagnosis , Eye , Tomography, X-Ray Computed/methods , Software
5.
Oxid Med Cell Longev ; 2023: 8003821, 2023.
Article in English | MEDLINE | ID: mdl-37077657

ABSTRACT

Diseases in the nervous system are common in the human body. People have to suffer a great burden due to huge economic costs and poor prognosis of the diseases. Many treatment modalities are now available that can make recovery better. Managing nutritional factors is also helpful for such diseases. The basic fibroblast growth factor (bFGF) is one of the major nutritional factors, which plays a crucial role in organogenesis and tissue homeostasis. It plays a role in cell proliferation, migration, and differentiation, thereby regulating angiogenesis and wound healing and repair of the muscle, bone, and nerve. The study on how to improve the stability of bFGF to increase the treatment effect for different diseases has garnered tremendous attention. Biomaterials are the popular methods to improve the stability of bFGF because they are safe for the living body as they are biocompatible. Biomaterials can be loaded with bFGF and delivered locally to achieve the goal of sustained bFGF release. In the present review, we report different types of biomaterials that are used for bFGF delivery for nerve repair and briefly report how the introduced bFGF can function in the nervous system. We aim to provide summative guidance for future studies about nerve injury using bFGF.


Subject(s)
Biocompatible Materials , Fibroblast Growth Factor 2 , Humans , Biocompatible Materials/therapeutic use , Fibroblast Growth Factor 2/pharmacology , Fibroblast Growth Factor 2/therapeutic use , Cell Proliferation , Cell Differentiation
6.
Oxid Med Cell Longev ; 2023: 8994901, 2023.
Article in English | MEDLINE | ID: mdl-36713034

ABSTRACT

Uveal melanoma (UM) is an aggressive intraocular malignant tumour that is closely related to autophagic dysfunction. We aimed to identify autophagy-related long noncoding RNAs (lncRNAs) to elucidate the molecular mechanism of UM. Here, we show that LINC01278 is a new potential biomarker with clinical prognostic value in UM through bioinformatics analysis. Application of an autophagy inhibitor (3-MA) and an autophagy agonist (MG-132) indicated that LINC01278 can inhibit UM cell proliferation, migration, and invasion by inducing autophagy. A xenograft nude mouse model was used to examine the tumorigenesis of UM cells in vivo. Mechanistically, LINC01278 can inhibit the mTOR signalling pathway to activate autophagy, as shown by experiments with an mTOR agonist (MHY1485) and mTOR inhibitor (rapamycin) treatment. Our findings indicate that LINC01278 functions as a tumour suppressor by inhibiting the mTOR signalling pathway to induce autophagy. Targeting the LINC01278-mTOR axis might be a novel and promising therapeutic approach for UM.


Subject(s)
Melanoma , RNA, Long Noncoding , Signal Transduction , TOR Serine-Threonine Kinases , Uveal Neoplasms , Animals , Humans , Mice , Autophagy , Cell Line, Tumor , Cell Proliferation , Cell Transformation, Neoplastic , TOR Serine-Threonine Kinases/metabolism , RNA, Long Noncoding/genetics , Uveal Neoplasms/genetics , Uveal Neoplasms/pathology , Melanoma/genetics , Melanoma/pathology
7.
Cell Death Dis ; 14(1): 55, 2023 01 23.
Article in English | MEDLINE | ID: mdl-36690663

ABSTRACT

Autophagy dysfunction is one of the common causes of tumor formation and plays an important role in uveal melanoma (UM). However, little is known about the regulatory mechanisms of autophagy in UM. Here, we show that PTK6 can promote the proliferation, migration, and invasion of UM cells by inhibiting autophagy. SOCS3 can inhibit the proliferation, migration, and invasion of UM cells. Overexpression of SOCS3 can partially rescue the PTK6-induced promotion of UM cell proliferation, migration, and invasion. Mechanistically, PTK6 can bind to SOCS3, and SOCS3 can downregulate the expression of PTK6. Furthermore, PTK6 can upregulate the phosphorylation of mTOR to inhibit autophagy. Taken together, our findings demonstrate the functions of PTK6 and SOCS3 in UM cells and targeting the SOCS3-PTK6 signaling axis might be a novel and promising therapeutic strategy for patients with UM.


Subject(s)
Apoptosis , Cell Transformation, Neoplastic , Humans , Phosphorylation , Cell Line, Tumor , Cell Proliferation , Carcinogenesis , TOR Serine-Threonine Kinases/metabolism , Autophagy , Cell Movement , Neoplasm Proteins/metabolism , Protein-Tyrosine Kinases/metabolism
8.
Int J Mol Sci ; 23(5)2022 Mar 01.
Article in English | MEDLINE | ID: mdl-35269871

ABSTRACT

The spontaneous depurination of genomic DNA occurs frequently and generates apurinic/pyrimidinic (AP) site damage that is mutagenic or lethal to cells. Error-prone DNA polymerases are specifically responsible for the translesion synthesis (TLS) of specific DNA damage, such as AP site damage, generally with relatively low fidelity. The Y-family DNA polymerases are the main error-prone DNA polymerases, and they employ three mechanisms to perform TLS, including template-skipping, dNTP-stabilized misalignment, and misincorporation-misalignment. The bypass mechanism of the dinB homolog (Dbh), an archaeal Y-family DNA polymerase from Sulfolobus acidocaldarius, is unclear and needs to be confirmed. In this study, we show that the Dbh primarily uses template skipping accompanied by dNTP-stabilized misalignment to bypass AP site analogs, and the incorporation of the first nucleotide across the AP site is the most difficult. Furthermore, based on the reported crystal structures, we confirmed that three conserved residues (Y249, R333, and I295) in the little finger (LF) domain and residue K78 in the palm subdomain of the catalytic core domain are very important for TLS. These results deepen our understanding of how archaeal Y-family DNA polymerases deal with intracellular AP site damage and provide a biochemical basis for elucidating the intracellular function of these polymerases.


Subject(s)
DNA Polymerase beta , Sulfolobus acidocaldarius , DNA Damage , DNA Polymerase beta/metabolism , DNA Repair , DNA Replication , DNA-Directed DNA Polymerase/metabolism , Sulfolobus acidocaldarius/genetics
9.
Eur J Ophthalmol ; 32(5): 2907-2912, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35089079

ABSTRACT

PURPOSE: To compare the plasma immune globulin and complement levels in different sorts of glaucoma to assess its association. METHODS: Cohort study. Plasma samples were collected from 226 normal controls and 236 glaucoma patients included 92 with acute primary angle-closure glaucoma (APACG), 76 with chronic primary angle-closure glaucoma (CPACG), 68 with primary open-angle glaucoma (POAG). 163 glaucoma patients with high intraocular pressure(IOP) was classified as a subgroup. Six indexes were analyzed: C3, C4, CH50, IgA, IgG, and IgM. RESULTS: There was a significant difference in C4, IgA, IgG, and IgM between patients with high IOP and normal controls groups(P < 0.01). TheC4 (0.27 ± 0.69 g/L), IgA (3.11 ± 1.04 g/L), IgG (12.07 ± 1.92 g/L) and IgM (1.17 ± 0.49 g/L) were higher(P < 0.05) in the high IOP groups compared with the normal controls (C4:0.25 ± 0.07 g/L, IgA: 2.54 ± 1.07 g/L, IgG: 11.21 ± 2.22 g/L, IgM:0.99 ± 0.41 g/L). There was a significant difference in age, C3, IgA, IgG, and IgM among the normal control, APACG, CPACG, and POAG. The C3 level in the APACG group (1.14 ± 0.16 g/L) was higher than normal group (1.06 ± 0.18 g/L). The IgA level was lower(P < 0.05) in the normal group (2.54 ± 1.07 g/L) compared with APACG (3.16 ± 0.97 g/L) and POAG group (2.91 ± 1.11 g/L). The IgG level of normal controls (11.21 ± 2.22 g/L) was lower (P < 0.05) than APACG group (12.15 ± 2.02 g/L) and CPACG group (11.95 ± 2.28 g/L). The IgM level was lower(P < 0.05) in the normal group (0.99 ± 0.41 g/L) compared with the APACG (1.24 ± 0.66 g/L) and CPACG group (1.17 ± 0.45 g/L). CONCLUSIONS: The levels of the plasma expression of C3, IgA, IgG, IgM may be useful for discriminating the glaucoma patients and for assessing the progress of glaucoma in different sorts.


Subject(s)
Glaucoma, Angle-Closure , Glaucoma, Open-Angle , Glaucoma , Acute Disease , Cohort Studies , Glaucoma, Open-Angle/diagnosis , Humans , Immunoglobulin A , Immunoglobulin G , Immunoglobulin M , Intraocular Pressure
10.
PLoS One ; 16(1): e0245459, 2021.
Article in English | MEDLINE | ID: mdl-33465119

ABSTRACT

BACKGROUND: Although previously published meta-analyses have compared the surgical effects between the methods of Idiopathic epiretinal membrane (iERM) removal with or without ILM peeling, they did not reach an agreement. PURPOSE: We aimed to provide more evidence for the treatment of iERM and whether additional ILM peeling was better or not by analyzing more updated studies and randomized control trials (RCTs). METHOD: The search was conducted in Pubmed, Embase, Cochrane Library, Web of Science and Open Grey without language limitation and the studies included were from inception to December 2019. All studies of iERM with or without ILM peeling showed at least one of outcomes, such as best-corrected visual acuity (BCVA), central macular thickness (CMT) and recurrence of ERM. The pooled results between above groups were showed by the mean differences (MDs) and risk ratios (RR) with corresponding 95% confidence intervals (CIs). RESULT: In total, 1645 eyes of five randomized controlled trials (RCTs) and fifteen retrospective studies were included. The short-term (<12 months) BCVA improvement in both groups showed no significant difference (MD = -0.01; 95% CI = -0.02 to 0.01; P = 0.36). However, the BCVA improvement was significantly better in ILM peeling eyes than in those without ILM peeling when considering the risk bias (MD = -0.04; 95% CI = -0.07 to -0.01; P = 0.008). The short-term (<12 months) CMT had a higher reduction in non ILM peeling group (MD = -9.02; 95% CI = -12.51 to -5.54; P < 0.00001) and the recurrence of ERM in ILM peeling group was lower (P < 0.00001). The long-term (≥12months) BCVA improvement ((MD = -0.00; 95% CI = -0.03 to 0.03; P = 0.97) and reduction of long-term (≥12months) CMT (MD = -1.14; 95% CI = -7.14 to -4.86; P = 0.71) were similar in both groups. CONCLUSION: By considering the risk of bias, we should determine whether ILM peeling is beneficial for short-term changes in BCVA in patients with iERM. Nevertheless, further studies are needed to confirm this. iERM removal without ILM peeling can improve the short-term decrease in CMT and ILM peeling decreases the recurrence of ERM, but the long-term changes in BCVA and CMT are similar with or without ILM peeling. There is a need for a true large scale randomized trial that will also include microperimetry and other functional measures.


Subject(s)
Epiretinal Membrane/surgery , Epiretinal Membrane/pathology , Humans , Macula Lutea/pathology , Ophthalmologic Surgical Procedures/methods , Recurrence , Visual Acuity
11.
Plast Reconstr Surg ; 147(1): 69-75, 2021 01 01.
Article in English | MEDLINE | ID: mdl-33370052

ABSTRACT

BACKGROUND: Worldwide application of hyaluronic acid has brought about severe complications, including central retinal arterial occlusion, which leads to a deleterious effect on vision. The current study explored the efficacy of superselective arterial hyaluronidase thrombolysis in rabbit retinal artery occlusion induced by hyaluronic acid. METHODS: Occlusion of the internal/external ophthalmic artery in New Zealand White rabbits was induced with superselective injection of hyaluronic acid. Superselective subtraction angiography and fundus examination were conducted to confirm and evaluate the artery embolism. After 30 minutes of embolism, hyaluronidase was injected in the occluded artery through superselective arterial intubation. RESULTS: Compared with preoperative and contralateral eyes, the postoperative eyes showed the symptoms of central retinal arterial occlusion and embolization, confirmed by digital subtraction angiography. After intraarterial hyaluronidase thrombolysis, the embolization failed to dissolve as shown on funduscopic and angiographic examinations. CONCLUSIONS: Superselective ophthalmic artery intervention could accurately and successfully establish the animal models of retinal artery occlusion induced by hyaluronic acid. The precise occlusion site of the retinal artery and complete embolism were confirmed by ophthalmologic examinations. Intraarterial hyaluronidase thrombolysis might not be an effective method to treat retinal artery occlusion induced by hyaluronic acid.


Subject(s)
Cosmetic Techniques/adverse effects , Dermal Fillers/adverse effects , Hyaluronoglucosaminidase/administration & dosage , Retinal Artery Occlusion/drug therapy , Thrombolytic Therapy/methods , Angiography, Digital Subtraction , Animals , Dermal Fillers/administration & dosage , Disease Models, Animal , Humans , Hyaluronic Acid/administration & dosage , Hyaluronic Acid/adverse effects , Injections, Intra-Arterial , Injections, Subcutaneous/adverse effects , Ophthalmic Artery/diagnostic imaging , Ophthalmic Artery/drug effects , Rabbits , Retinal Artery Occlusion/chemically induced , Retinal Artery Occlusion/diagnosis , Thrombolytic Therapy/adverse effects , Treatment Outcome , Urokinase-Type Plasminogen Activator
12.
Eur J Ophthalmol ; 31(2): 397-404, 2021 Mar.
Article in English | MEDLINE | ID: mdl-31986913

ABSTRACT

PURPOSE: We propose a new method to analyze the feasibility of calculating proptosis on the basis of simple Pythagorean theorem. METHOD: This is a non-inferiority trial, and the registration number is ChiCTR1900026490. The absolute value of proptosis of two eyes of patients without eye injury or diseases visiting our clinic from December 2017 to June 2019 was measured by computed tomography, Hertel exophthalmometer, and by simple Pythagorean theorem. With the application of MedCalc software version 19.0.4, the differences between these methods in two eyes were showed by Bland and Altman plot. RESULTS: A 95% limit of agreement between computed tomography and Hertel exophthalmometer is -0.7 to 0.62 mm in right eye proptosis. A total of 4.44% (4/90) points were outside 95% limit of agreement. Similarly, the same method was used to compare the proptosis between computed tomography and other ways. We also compared the proptosis measured by homolateral and heterolateral simple Pythagorean theorem method in order to find out the consistence between them. The points in all Bland and Altman plots were lower than 5%, which means that the results of comparison between any two methods had a good consistency in the measurement of proptosis of both eyes. CONCLUSION: Pythagorean theorem can be applied to evaluate proptosis and has a good consistency comparing with computed tomography and the Hertel exophthalmometer. The method can be used for measuring proptosis of unilateral orbital, maxillofacial trauma, and dysplasia accurately. It is practical in clinical use of proptosis assessment because of its accuracy, reliability, and simplicity.


Subject(s)
Anatomy, Regional , Exophthalmos/diagnostic imaging , Mathematics , Tomography, X-Ray Computed/methods , Adult , Feasibility Studies , Female , Humans , Male , Middle Aged , Reproducibility of Results , Young Adult
13.
Eur J Ophthalmol ; 31(4): 1606-1617, 2021 Jul.
Article in English | MEDLINE | ID: mdl-33176497

ABSTRACT

Diabetic retinopathy (DR), which is known as a severe complication of type 2 diabetes mellitus, can cause varying degrees of damage to visual acuity. The pathogenesis of DR is multifactorial and not fully understood. Many previous research studies have revealed that an aberrant level of some long non-coding RNAs (lncRNAs) may accelerate the development of DR. These lncRNAs are regulatory factors and research related to them is always underway. In this review, we will update several types of lncRNAs based on the previous studies which are related to the development of DR and discuss its potential mechanisms of action and connections. Generally, the review will help us know more about lncRNAs and provide directions for future research related to DR.


Subject(s)
Diabetes Mellitus, Type 2 , Diabetic Retinopathy , RNA, Long Noncoding , Diabetes Mellitus, Type 2/complications , Diabetes Mellitus, Type 2/genetics , Diabetic Retinopathy/genetics , Humans , RNA, Long Noncoding/genetics , Visual Acuity
14.
Aging (Albany NY) ; 12(14): 14620-14632, 2020 07 18.
Article in English | MEDLINE | ID: mdl-32681792

ABSTRACT

BACKGROUND: Kidney renal clear cell carcinoma (KIRC) is one of the most prevalent malignancies with high incidence and mortality. The circadian clock, which is also involved in the regulation of the immune system and tumor microenvironment, is an internal timing system that allows organisms to adjust biological processes and behaviors according to geophysical time. RESULT: A wide range of circadian clock genes are epigenetically altered in KIRC, and associated with the overall survival and disease-free survival of patients. SNV analysis revealed missense mutation and splice site to be the most common variant types of circadian clock genes in KIRC. Several circadian clock genes were involved in the regulation of some cancer-related hallmark pathways, including apoptosis and cell cycle pathway. Further, immune infiltrates analysis not only revealed that the expression of circadian clock genes is associated with immune cell infiltrates, but also that somatic copy-number alteration of circadian clock genes could inhibit the immune infiltrates. Moreover, enrichment analysis implied that the circadian clock genes could regulate transcription factor activity and circadian rhythm in KIRC. CONCLUSION: Our results demonstrate the potential of chrono-immunotherapy as a candidate option for the management of KIRC. METHOD: Multi-omics analysis was performed to comprehensively determine the roles of core circadian clock genes in KIRC.


Subject(s)
Adenocarcinoma, Clear Cell/genetics , Carcinoma, Renal Cell/genetics , Circadian Rhythm Signaling Peptides and Proteins/genetics , Kidney Neoplasms/genetics , Tumor Microenvironment/genetics , Adenocarcinoma, Clear Cell/immunology , Adenocarcinoma, Clear Cell/pathology , Alternative Splicing , Apoptosis/genetics , Biomarkers, Tumor , Carcinoma, Renal Cell/immunology , Carcinoma, Renal Cell/pathology , Circadian Rhythm , Disease-Free Survival , Epigenesis, Genetic , Gene Dosage , Genes, cdc/genetics , Genetic Variation , Humans , Kidney Neoplasms/pathology , Mutation, Missense , Prognosis , Survival Analysis , Tumor Microenvironment/immunology
15.
Genomics ; 112(6): 4100-4114, 2020 11.
Article in English | MEDLINE | ID: mdl-32640276

ABSTRACT

Renal cell carcinoma is one of the most common malignancies with high morbidity and mortality. STAT proteins play a significant role in cell biological behavior and immune response associated with cancer progression. In our study, the datasets analyzed for the expression and potential functions can be found in several bioinformatics analysis tools. We found that STAT1/2/4/6 were upregulated in RCC while STAT3/5B were downregulated. The expression of STAT2/4/5B were significantly associated with the pathological stage of RCC patients. RCC patients with high expression of STAT2/4 and low/medium expression of STAT5B had a poor overall survival. The function of STATs and the neighboring genes mainly enriched in JAK-STAT signaling pathway and NOD-like receptor signaling pathway. Several transcription factor, kinase, and miRNA targets were identified. Close correlations were obtained between immune cell infiltration and STATs in RCC. Our results have provided novel insights for the selection of immunotherapeutic targets and prognostic biomarkers.


Subject(s)
Carcinoma, Renal Cell/genetics , Kidney Neoplasms/genetics , STAT Transcription Factors/genetics , Carcinoma, Renal Cell/mortality , Carcinoma, Renal Cell/pathology , Carcinoma, Renal Cell/therapy , Computational Biology , Data Mining , Drug Resistance, Neoplasm , Gene Expression Regulation, Neoplastic , Humans , Kidney Neoplasms/mortality , Kidney Neoplasms/pathology , Kidney Neoplasms/therapy , Lymphocytes, Tumor-Infiltrating , MicroRNAs/genetics , MicroRNAs/metabolism , Prognosis , Protein Interaction Mapping , Protein Kinases/genetics , RNA, Messenger/metabolism , STAT Transcription Factors/metabolism , Signal Transduction , Transcription Factors/genetics
16.
PLoS One ; 15(6): e0234016, 2020.
Article in English | MEDLINE | ID: mdl-32480401

ABSTRACT

PURPOSE: We propose a new method to calculate proptosis by using the simple Heron's formula and analyze its feasibility. METHOD: It was a none-inferiority trial. The registration number was ChiCTR1900026490. The absolute value of proptosis in 120 eyes, 60 patients without eye injury or diseases, was measured by computed tomography (CT) and simple Heron's formula. We did regression analysis and analyzed the differences between the two methods with Medcalc software version 19.0.4. The result was showed by Passing-Bablok regression analysis diagram and Bland and Altman plot. RESULTS: The Passing-Bablok showed that the result of proptosis measured by CT and simple Heron's formula showed good positive correlation. A 95% limit of agreement in proptosis between CT and Heron's formula method was -0.46 to 0.54 mm in right eye and -0.45 to 0.46 mm in left eye. 1.66% (1/60) point was outside 95% LoA in both eyes. Moreover, a 95% limit of agreement between CT and Heron's formula method was -0.42 to 0.56 mm in difference of both eyes. 3.33% (2/60) points were outside 95% LoA. The points in all Bland and Altman plots were lower than 5%. It means that the results of comparison between the two methods had a good consistency in the measurement of proptosis. CONCLUSIONS: Heron's formula could be applied to calculate proptosis and has a good consistency compared with computed tomography (CT). This method is practical in proptosis assessment because of its accuracy, reliability and simplicity.


Subject(s)
Anthropometry/methods , Exophthalmos/diagnosis , Adult , Anthropometry/instrumentation , Eye/diagnostic imaging , Feasibility Studies , Female , Humans , Male , Middle Aged , Reproducibility of Results , Tomography, X-Ray Computed , Young Adult
18.
BMC Ophthalmol ; 20(1): 127, 2020 Apr 03.
Article in English | MEDLINE | ID: mdl-32245437

ABSTRACT

BACKGROUND: To report a case of conjunctival sac fistula after cosmetic lateral canthoplasty which is rare. CASE PRESENTATION: A young women who underwent bilateral canthoplasty appeared with lacrimation of the right eye. We found there was a skin fistula with transparent tears at 2 mm lateral to the right canthus ligament and the liquid containing fluorescein was seen to overflow at the fistula after using fluorescein sodium eye drops. The number 7 lacrimal duct probe was visible under the temporal conjunctiva when exploring the fistula, and the fistula was about 4 mm. The patient was diagnosed with conjunctival sac fistula and fistula excision was performed. The patient did not tear abnormally after observation 3 months later and the incision healed well. CONCLUSIONS: The case report illustrates an uncommon post-lateral canthoplasty complication. We suggested that surgeons who perform this kind of surgery should ask about epiphora and look for conjunctival sac fistula at follow-up assessment.


Subject(s)
Conjunctival Diseases/etiology , Cutaneous Fistula/etiology , Eyelids/surgery , Surgery, Plastic/adverse effects , Conjunctival Diseases/diagnosis , Conjunctival Diseases/surgery , Cutaneous Fistula/diagnosis , Cutaneous Fistula/surgery , Female , Fluorescein/administration & dosage , Fluorescent Dyes/administration & dosage , Humans , Lacrimal Apparatus Diseases/etiology , Suture Techniques , Young Adult
19.
Front Microbiol ; 11: 386, 2020.
Article in English | MEDLINE | ID: mdl-32265858

ABSTRACT

Effectors secreted by the type III protein secretion system (T3SS) of rhizobia are host-specific determinants of the nodule symbiosis. Here, we have characterized NopD, a putative type III effector of Bradyrhizobium sp. XS1150. NopD was found to possess a functional N-terminal secretion signal sequence that could replace that of the NopL effector secreted by Sinorhizobium sp. NGR234. Recombinant NopD and the C-terminal domain of NopD alone can process small ubiquitin-related modifier (SUMO) proteins and cleave SUMO-conjugated proteins. Activity was abolished in a NopD variant with a cysteine-to-alanine substitution in the catalytic core (NopD-C972A). NopD recognizes specific plant SUMO proteins (AtSUMO1 and AtSUMO2 of Arabidopsis thaliana; GmSUMO of Glycine max; PvSUMO of Phaseolus vulgaris). Subcellular localization analysis with A. thaliana protoplasts showed that NopD accumulates in nuclear bodies. NopD, but not NopD-C972A, induces cell death when expressed in Nicotiana tabacum. Likewise, inoculation tests with constructed mutant strains of XS1150 indicated that nodulation of Tephrosia vogelii is negatively affected by the protease activity of NopD. In conclusion, our findings show that NopD is a symbiosis-related protein that can process specific SUMO proteins and desumoylate SUMO-conjugated proteins.

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