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1.
Injury ; 44(4): 481-7, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23199758

ABSTRACT

UNLABELLED: The aim of our study is to analyse the results of our surgical technique for the treatment of proximal humeral fractures and fracture dislocations using locking plates in conjunction with calcium sulphate bone-substitute augmentation and tuberosity repair using high-strength sutures. We used the extended deltoid-splitting approach for fracture patterns involving displacement of both lesser and greater tuberosities and for fracture-dislocations. Optimal surgical management of proximal humeral fractures remains controversial. Locking plates have become a popular method of fixation. However, failure of fixation may occur if they are used as the sole method of fixation in comminuted fractures, especially in osteopenic bone. METHODS: We retrospectively analysed 22 proximal humeral fractures in 21 patients; 10 were male and 11 female with an average age of 64.6 years (range 37-77). Average follow-up was 24 months. Eleven of these fractures were exposed by the extended deltoid-splitting approach. Fractures were classified according to Neer and Hertel systems. Preoperative radiographs and computed tomography (CT) scans in three- and four-part fractures were done to assess the displacement and medial calcar length for predicting the humeral head vascularity. According to the Neer classification, there were five two-part, six three-part, five four-part fractures and six fracture-dislocations (two anterior and four posterior). Results were assessed clinically with disabilities of the arm, shoulder and hand (DASH) scores, modified Constant and Murley scores and serial postoperative radiographs. RESULTS: The mean DASH score was 16.18 and the modified Constant and Murley score was 64.04 at the last follow-up. Eighteen out of twenty-two cases achieved good clinical outcome. All the fractures united with no evidence of infection, failure of fixation, malunion, tuberosity failure, avascular necrosis or adverse reaction to calcium sulphate bone substitute. There was no evidence of axillary nerve injury. Four patients had a longer recovery period due to stiffness, associated wrist fracture and elbow dislocation. The CaSO4 bone substitute was replaced by normal appearing trabecular bone texture at an average of 6 months in all patients. CONCLUSION: In our experience, we have found the use of locking plates, calcium sulphate bone substitute and tuberosity repair with high-strength sutures to be a safe and reliable method of internal fixation for complex proximal humeral fractures and fracture-dislocations. Furthermore, we have also found the use of the extended deltoid-splitting approach to be safe and to provide excellent exposure facilitating accurate reduction for fixation of the fracture patterns involving displacement of both lesser and greater tuberosities and for fracture-dislocations.


Subject(s)
Axilla/diagnostic imaging , Bone Plates , Bone Substitutes/therapeutic use , Calcium Sulfate/therapeutic use , Fracture Fixation, Internal/methods , Shoulder Fractures/surgery , Adult , Aged , Axilla/innervation , Female , Follow-Up Studies , Fracture Healing , Humans , Male , Middle Aged , Orthopedic Procedures , Pain Measurement , Patient Positioning , Radiography , Range of Motion, Articular , Recovery of Function , Retrospective Studies , Shoulder Fractures/diagnostic imaging , Shoulder Fractures/physiopathology , Treatment Outcome
3.
Biopolymers ; 51(1): 99-107, 1999.
Article in English | MEDLINE | ID: mdl-10380357

ABSTRACT

This paper focuses on the inhibitory mechanism of E-64 and its derivatives (epoxysuccinyl-based inhibitors) with some cysteine proteases, based on the binding modes observed in the x-ray crystal structures of their enzyme-inhibitor complexes. E-64 is a potent irreversible inhibitor against general cysteine proteases, and its binding modes with papain, actinidin, cathepsin L, and cathepsin K have been reviewed at the atomic level. E-64 interacts with the Sn subsites of cysteine proteases. Although the Sn-Pn (n = 1-3) interactions of the inhibitor with the main chains of the active site residues are similar in respective complexes, the significant difference is observed in the side-chain interactions of S2-P2 and S3-P3 pairs because of different residues constituting the respective subsites. E-64-c and CA074 are representative derivatives developed from E-64 as a clinical usable and a cathepsin B-specific inhibitors, respectively. In contrast with similar binding/inhibitory modes of E-64-c and E-64 for cysteine proteases, the inhibitory mechanism of cathepsin B-specific CA074 results from the binding to the Sn' subsite.


Subject(s)
Cysteine Endopeptidases/chemistry , Cysteine Proteinase Inhibitors/chemistry , Cysteine Proteinase Inhibitors/pharmacology , Leucine/analogs & derivatives , Binding Sites , Crystallography, X-Ray , Cysteine Endopeptidases/metabolism , Cysteine Proteinase Inhibitors/chemical synthesis , Drug Design , Epoxy Compounds , Leucine/chemical synthesis , Leucine/chemistry , Leucine/pharmacology , Models, Molecular , Protein Conformation , Static Electricity , Structure-Activity Relationship , Succinic Acid
4.
Protein Eng ; 9(11): 977-86, 1996 Nov.
Article in English | MEDLINE | ID: mdl-8961350

ABSTRACT

Two binding modes of the isobutyl-NH-Eps-Leu-Pro inhibitor to cathepsin B have been proposed. Molecular docking using an empirical force field was carried out to distinguish between the two modes. The search began with manual docking, followed by random perturbations of the docking conformation and cycles of Monte Carlo minimization. Finally, molecular dynamics was carried out for the most favorable docking conformations. The present calculations predict that the isobutyl-NH-Eps-Leu-Pro inhibitor preferentially binds to the S' rather than the S subsites of cathepsin B. The S' binding mode prediction is supported by the X-ray crystal structure of cathepsin B bound to a closely related ethyl-O-Eps-Ile-Pro inhibitor, which was found to bind in the S'subsite with the C-terminal epoxy ring carbon making a covalent bond to the sulfur atom of Cys29. This agreement, in turn, validates our docking strategy. Furthermore, the calculations provide evidence that the dominant contribution to the total stabilization energy of the enzyme-inhibitor complex stems from the strong electrostatic interaction between the negatively charged C-terminal carboxylate group of the ligand and the positively charged imidazolium rings of His110 and His111. The latter are stabilized and held in an optimal orientation for interactions with the C-terminal end of the ligand through a salt bridge between the side chains of His110 and Asp22. By comparison with the crystal structure, some insight into the specificity of the epoxyldipeptide family towards cathepsin B inhibition has been extracted. Both the characteristics of the enzyme (e.g. subsite size and hydrophobicity) as well as the nature of the inhibitor influence the selectivity of an inhibitor towards an enzyme.


Subject(s)
Cathepsin B/chemistry , Cysteine Proteinase Inhibitors/chemistry , Dipeptides/chemistry , Leucine/analogs & derivatives , Binding Sites , Cathepsin B/antagonists & inhibitors , Cathepsin B/metabolism , Computer Simulation , Cysteine Proteinase Inhibitors/metabolism , Hydrogen Bonding , Leucine/chemistry , Leucine/metabolism , Models, Molecular , Molecular Conformation , Monte Carlo Method , Structure-Activity Relationship
5.
J Biol Chem ; 270(30): 18036-43, 1995 Jul 28.
Article in English | MEDLINE | ID: mdl-7629112

ABSTRACT

Five synthetic substrates containing different amino acid residues at the P3 position (acetyl-X-Arg-Arg-AMC, where X is Gly, Glu, Arg, Val, and Tyr and where AMC represents 7-amindo-4-methylcoumarin) were used to investigate the S3 subsite specificity of cathepsin B. At pH 6.0, the specificity constant, kcat/Km, for tripeptide substrate hydrolysis was observed to increase in the order Glu < Gly < Arg < Val < Tyr. Molecular modeling studies of substrates containing a P3 Glu, Arg, or Tyr covalently bound as the tetrahedral intermediate to the enzyme suggest that the specificity for a P3 Tyr is because of a favorable aromatic-aromatic interaction with Tyr75 on the enzyme as well as a possible H bond between the P3 Tyr hydroxyl and the side chain carboxyl of Asp69.


Subject(s)
Cathepsin B/metabolism , Amino Acid Sequence , Animals , Cathepsin B/chemistry , Coumarins/metabolism , Hydrogen-Ion Concentration , Hydrolysis , Kinetics , Models, Molecular , Molecular Sequence Data , Oligopeptides/metabolism , Rats , Substrate Specificity , Thermodynamics
6.
J Biol Chem ; 270(10): 5527-33, 1995 Mar 10.
Article in English | MEDLINE | ID: mdl-7890671

ABSTRACT

The lysosomal cysteine proteinase cathepsin B (EC 3.4.22.1) plays an important role in protein catabolism and has also been implicated in various disease states. The crystal structures of two forms of native recombinant rat cathepsin B have been determined. The overall folding of rat cathepsin B was shown to be very similar to that of the human liver enzyme. The structure of the native enzyme containing an underivatized active site cysteine (Cys29) showed the active enzyme conformation to be similar to that determined previously for the oxidized form. In a second structure Cys29 was derivatized with the reversible blocking reagent pyridyl disulfide. In this structure large side chain conformational changes were observed for the two key catalytic residues Cys29 and His199, demonstrating the potential flexibility of these side chains. In addition the structure of the complex between rat cathepsin B and the inhibitor benzyloxycarbonyl-Arg-Ser(O-Bzl) chloromethylketone was determined. The complex structure showed that very little conformational change occurs in the enzyme upon inhibitor binding. It also allowed visualization of the interaction between the enzyme and inhibitor. In particular the interaction between Glu245 and the P2 Arg residue was clearly demonstrated, and it was found that the benzyl group of the P1 substrate residue occupies a large hydrophobic pocket thought to represent the S'1 subsite. This may have important implications for structure-based design of cathepsin B inhibitors.


Subject(s)
Amino Acid Chloromethyl Ketones/chemistry , Cathepsin B/chemistry , Protein Folding , Protein Structure, Secondary , Amino Acid Chloromethyl Ketones/metabolism , Amino Acid Sequence , Animals , Cathepsin B/antagonists & inhibitors , Computer Simulation , Crystallization , Crystallography, X-Ray , Cystine , Disulfides , Drug Design , Humans , Liver/enzymology , Models, Molecular , Rats , Recombinant Proteins/antagonists & inhibitors , Recombinant Proteins/chemistry
7.
J Biol Chem ; 268(1): 235-40, 1993 Jan 05.
Article in English | MEDLINE | ID: mdl-8093241

ABSTRACT

The pH dependence of cathepsin B-catalyzed hydrolyzes is very complex. At least seven dissociable groups are involved in the binding and hydrolysis of 7-amido-4-methyl coumarin and p-nitroaniline (pNA)-based substrates containing a P1 Arg and either a Phe or Arg at the P2 position. By site-directed mutagenesis we show that a previous suggestion, that Arg202 is one of the groups which influences the pH dependence of cathepsin B-catalyzed hydrolysis of the Z-Arg-Arg-pNA substrate, is not valid. However, it was found that Glu245, which has a pKa of 5.1 in rat cathepsin B, is responsible for the S2-P2 specificity for Arg-containing substrates and controls the pH dependence of their hydrolysis. Furthermore, the data indicate that Glu245, which forms a hydrogen bond with the guanidinium group of the substrate's P2 Arg, contributes about 1.8 kcal/mol to transition state stabilization in the protonated state and about 0.6 kcal/mol in the deprotonated state. Mutation of Glu245 to Gln results in a 16-fold decrease in kcat but does not affect Km. While cathepsin B has a 7-fold preference for Phe over Arg at the P2 position of a substrate, binding of the aromatic side chain does not appear to be influenced by Glu245.


Subject(s)
Cathepsin B/metabolism , Glutamates , Mutagenesis, Site-Directed , Amino Acid Sequence , Base Sequence , Binding Sites , Cathepsin B/chemistry , Cathepsin B/genetics , Cloning, Molecular , Enzyme Stability , Glutamic Acid , Humans , Hydrogen-Ion Concentration , Kinetics , Mathematics , Models, Molecular , Models, Theoretical , Molecular Sequence Data , Oligodeoxyribonucleotides , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/genetics , Substrate Specificity
8.
Biol Chem Hoppe Seyler ; 373(7): 413-8, 1992 Jul.
Article in English | MEDLINE | ID: mdl-1515068

ABSTRACT

Previous suggestions from sequence alignment studies and examination of the recently determined X-ray crystal structures of cathepsin B point to roles for several specific residues in substrate binding and catalysis. The role of these groups is being examined by studying cathepsin B mutants produced using a yeast expression system. The substitutions Gly198Asp, Arg202Ala, His111Gln and Glu245Gln provide a mechanistic basis for the exopeptidase activity of cathepsin B and the ability of this cysteine proteinase to accept an arginine residue in the S2 subsite.


Subject(s)
Cathepsin B/analysis , Amino Acid Sequence , Animals , Glycine/physiology , Hydrogen-Ion Concentration , Kinetics , Molecular Sequence Data , Papain/analysis , Rats , X-Ray Diffraction , Yeasts/enzymology
9.
J Biol Chem ; 265(11): 5950-1, 1990 Apr 15.
Article in English | MEDLINE | ID: mdl-2180938

ABSTRACT

A glycosylation-minus mutant of rat cathepsin B expressed in yeast has been purified and crystallized. X-ray diffraction data have been collected and molecular replacement for solving the structure is in progress. The space group for the recombinant rat cathepsin B was determined to be P2(1) with unit cell dimensions alpha = 62.2 A, b = 90.19 A, c = 47.07 A, and beta = 97.43 degrees. A unit cell contains 4 molecules and 2 molecules per asymmetric unit.


Subject(s)
Cathepsin B/isolation & purification , Animals , Cathepsin B/genetics , Cloning, Molecular , Crystallization , Electrophoresis, Polyacrylamide Gel , Molecular Weight , Rats , Recombinant Proteins/isolation & purification , Saccharomyces cerevisiae/genetics
10.
Biochemistry ; 28(3): 1330-2, 1989 Feb 07.
Article in English | MEDLINE | ID: mdl-2713367

ABSTRACT

E-64 [1-[N-[(L-3-trans-carboxyoxirane-2-carbonyl)-L-leucyl] amino]-4-guanidinobutane] is an irreversible inhibitor of many cysteine proteases. A papain-E-64 complex was crystallized at pH 6.3 by using the hanging drop method. Three different crystal forms grew in 3-7 days; the form chosen for structure analysis has space group P212121, with a = 42.91(4) A, b = 102.02(6) A, c = 49.73(2) A, and Z = 4. Diffraction data were measured to 2.4-A resolution, giving 9367 unique reflections. The papain structure was solved by use of the molecular replacement method, and then the inhibitor was located from a difference electron density map and fitted with the aid of a PS330 computer graphics system. The structure of the complex was refined to R = 23.3%. Our analysis shows that a covalent link is formed between the sulfur of the active-site cysteine 25 and the C-2 atom of the inhibitor. Contrary to earlier predictions, the E-64 inhibitor clearly interacts with the S subsites on the enzyme rather than the S' subsites, and papain's histidine 159 imidazole group plays a binding rather than a catalytic role in the inactivation process.


Subject(s)
Leucine/analogs & derivatives , Papain/metabolism , Protease Inhibitors/metabolism , Crystallization , Hydrogen Bonding , Leucine/metabolism , Spectrometry, Fluorescence
12.
Biochim Biophys Acta ; 479(2): 133-42, 1977 Nov 16.
Article in English | MEDLINE | ID: mdl-921994

ABSTRACT

The structure of alpha-cytidine, C9H13N3O5, monoclinic with space group C2 and cell parameters a = 20.064 (3) A, b = 7.100 (1) A, c = 7.860 (2) A, beta = 104.60 (2) degrees, Z = 4, was determined by X-ray diffraction using a combination of direct methods, Patterson and difference Fourier techniques and refined by block-diagonal least-squares to a final R of 0.033 for 1002 reflections measured on a diffractometer. The glycosidic torsional angle, chiCN = -28.4 degrees, is in the anti region; the sugar pucker is C(2')exo-C(3')endo in a nearly pure 32H twist; and the conformation of C(4')-C(5') is gauche-gauche. The molecules are bound by hydrogen bonds in the lattice with little likelihood of base-stacking interactions. The molecular features of the compound are compared and contrasted with those of its naturally occurring beta-anomer, and some biological implications of this structure, and alpha-nucleosides in general, are discussed.


Subject(s)
Cytidine , Hydrogen Bonding , Models, Molecular , Molecular Conformation , X-Ray Diffraction
13.
Biochim Biophys Acta ; 447(3): 274-84, 1976 Oct 18.
Article in English | MEDLINE | ID: mdl-974127

ABSTRACT

The crystal structure of the title compound, which is a formal analogue of 5-methyl-N4-hydroxycytosine nucleosides, has been determined by X-ray diffraction. The space group is P2(1)/c with a = 7.368 (2), b = 12.096 (3), c = 9.192 (4) A, beta = 113.94 (3) degrees. Three-dimensional intensity data were collected with a four-circle diffractometer, and the structure was refined by block-diagonal least-squares to R = 0.053. The compound is in the imino form, and the exocyclic N4-OH is located essentially in the plane of the pyrimidine ring, and syn to the ring (N(3). There is an intramolecular hydrogen bond involving the N(3)-H as donor and O(4) as acceptor, viz. N(3)-H(31)----O(4)-H. With this conformation, which probably prevails also in solution, the compound would be unable to participate in normal Watson-Crick base pairing. It is shown that a similar situation may prevail for N4-hydroxycytosine nucleosides. The implications with regard to the molecular mechanism of hydroxylamine mutagenesis, with particular reference to the T-even bacteriophages, are discussed. Analogous considerations are applied to an examination of the possible behaviour of hydroxylamine-modified adenine nucleosides.


Subject(s)
Cytosine/analogs & derivatives , Hydrogen Bonding , Hydroxylamines , Imino Acids , Molecular Conformation , Mutation , X-Ray Diffraction
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