Terrestrial laser scanning and low magnetic field digitization yield similar architectural coarse root traits for 32-year-old Pinus ponderosa trees.

BACKGROUND: Understanding how trees develop their root systems is crucial for the comprehension of how wildland and urban forest ecosystems plastically respond to disturbances such as harvest, fire, and climate change. The interplay between the endogenously determined root traits and the response to environmental stimuli results in tree adaptations to biotic and abiotic factors, influencing stability, carbon allocation, and nutrient uptake. Combining the three-dimensional structure of the root system, with root morphological trait information promotes a robust understanding of root function and adaptation plasticity. Low Magnetic Field Digitization coupled with AMAPmod (botAnique et Modelisation de l'Architecture des Plantes) software has been the best-performing method for describing root system architecture and providing reliable measurements of coarse root traits, but the pace and scale of data collection remain difficult. Instrumentation and applications related to Terrestrial Laser Scanning (TLS) have advanced appreciably, and when coupled with Quantitative Structure Models (QSM), have shown some potential toward robust measurements of tree root systems. Here we compare, we believe for the first time, these two methodologies by analyzing the root system of 32-year-old Pinus ponderosa trees. RESULTS: In general, at the total root system level and by root-order class, both methods yielded comparable values for the root traits volume, length, and number. QSM for each root trait was highly sensitive to the root size (i.e., input parameter PatchDiam) and models were optimized when discrete PatchDiam ranges were specified for each trait. When examining roots in the four cardinal direction sectors, we observed differences between methodologies for length and number depending on root order but not volume. CONCLUSIONS: We believe that TLS and QSM could facilitate rapid data collection, perhaps in situ, while providing quantitative accuracy, especially at the total root system level. If more detailed measures of root system architecture are desired, a TLS method would benefit from additional scans at differing perspectives, avoiding gravitational displacement to the extent possible, while subsampling roots by hand to calibrate and validate QSM models. Despite some unresolved logistical challenges, our results suggest that future use of TLS may hold promise for quantifying tree root system architecture in a rapid, replicable manner.

Ecotourism and mangrove conservation in Southeast Asia: Current trends and perspectives.

Mangroves in Southeast Asia provide numerous supporting, provisioning, regulating, and cultural services that are crucial to the environment and local livelihoods since they support biodiversity conservation and climate change resilience. However, Southeast Asia mangroves face deforestation threats from the expansion of commercial aquaculture, agriculture, and urban development, along with climate change-related natural processes. Ecotourism has gained prominence as a financial incentive tool to support mangrove conservation and restoration. Through a systematic literature review approach, we examined the relationships between ecotourism and mangrove conservation in Southeast Asia based on scientific papers published from 2010 to 2022. Most of the studies were reported in Indonesia, Malaysia, Philippines, Thailand, and Vietnam, respectively, which were associated with the highest number of vibrant mangrove ecotourism sites and largest mangrove areas compared to the other countries of Southeast Asia. Mangrove-related ecotourism activities in the above countries mainly include boat tours, bird and wildlife watching, mangrove planting, kayaking, eating seafood, and snorkeling. The economic benefits, such as an increase in income associated with mangrove ecotourism, have stimulated infrastructural development in ecotourism destinations. Local communities benefited from increased access to social amenities such as clean water, electricity, transportation networks, schools, and health services that are intended to make destinations more attractive to tourists. Economic benefits from mangrove ecotourism motivated the implementation of several community-based mangrove conservation and restoration initiatives, which attracted international financial incentives and public-private partnerships. Since mangroves are mostly located on the land occupied by indigenous people and local communities, ensuring respect for their land rights and equity in economic benefit sharing may increase their intrinsic motivation and participation in mangrove restoration and conservation initiatives. Remote sensing tools for mangrove monitoring, evaluation, and reporting, and integrated education and awareness campaigns can ensure the long-term conservation of mangroves while sustaining ecotourism's economic infrastructure and social amenities benefits.

Exploring UAS-lidar as a sampling tool for satellite-based AGB estimations in the Miombo woodland of Zambia.

To date, only a limited number of studies have utilized remote sensing imagery to estimate aboveground biomass (AGB) in the Miombo ecoregion using wall-to-wall medium resolution optical satellite imagery (Sentinel-2 and Landsat), localized airborne light detection and ranging (lidar), or localized unmanned aerial systems (UAS) images. On the one hand, the optical satellite imagery is suitable for wall-to-wall coverage, but the AGB estimates based on such imagery lack precision for local or stand-level sustainable forest management and international reporting mechanisms. On the other hand, the AGB estimates based on airborne lidar and UAS imagery have the precision required for sustainable forest management at a local level and international reporting requirements but lack capacity for wall-to-wall coverage. Therefore, the main aim of this study was to investigate the use of UAS-lidar as a sampling tool for satellite-based AGB estimation in the Miombo woodlands of Zambia. In order to bridge the spatial data gap, this study employed a two-phase sampling approach, utilizing Sentinel-2 imagery, partial-coverage UAS-lidar data, and field plot data to estimate AGB in the 8094-hectare Miengwe Forest, Miombo Woodlands, Zambia, where UAS-lidar estimated AGB was used as reference data for estimating AGB using Sentinel-2 image metrics. The findings showed that utilizing UAS-lidar as reference data for predicting AGB using Sentinel-2 image metrics yielded superior results (Adj-R2 = 0.70, RMSE = 27.97) than using direct field estimated AGB and Sentinel-2 image metrics (R2 = 0.55, RMSE = 38.10). The quality of AGB estimates obtained from this approach, coupled with the ongoing advancement and cost-cutting of UAS-lidar technology as well as the continuous availability of wall-to-wall optical imagery such as Sentinel-2, provides much-needed direction for future forest structural attribute estimation for efficient management of the Miombo woodlands.

Bacterial Emission Factors: A Foundation for the Terrestrial-Atmospheric Modeling of Bacteria Aerosolized by Wildland Fires.

Wildland fire is a major global driver in the exchange of aerosols between terrestrial environments and the atmosphere. This exchange is commonly quantified using emission factors or the mass of a pollutant emitted per mass of fuel burned. However, emission factors for microbes aerosolized by fire have yet to be determined. Using bacterial cell concentrations collected on unmanned aircraft systems over forest fires in Utah, USA, we determine bacterial emission factors (BEFs) for the first time. We estimate that 1.39 × 1010 and 7.68 × 1011 microbes are emitted for each Mg of biomass consumed in fires burning thinning residues and intact forests, respectively. These emissions exceed estimates of background bacterial emissions in other studies by 3-4 orders of magnitude. For the ∼2631 ha of similar forests in the Fishlake National Forest that burn each year on average, an estimated 1.35 × 1017 cells or 8.1 kg of bacterial biomass were emitted. BEFs were then used to parametrize a computationally scalable particle transport model that predicted over 99% of the emitted cells were transported beyond the 17.25 x 17.25 km model domain. BEFs can be used to expand understanding of global wildfire microbial emissions and their potential consequences to ecosystems, the atmosphere, and humans.

Use of Multi-Date and Multi-Spectral UAS Imagery to Classify Dominant Tree Species in the Wet Miombo Woodlands of Zambia.

Accurate maps of tree species distributions are necessary for the sustainable management of forests with desired ecological functions. However, image classification methods to produce species distribution maps for supporting sustainable forest management are still lacking in the Miombo woodland ecoregion. This study used multi-date multispectral Unmanned Aerial Systems (UAS) imagery collected at key phenological stages (leaf maturity, transition to senescence, and leaf flushing) to classify five dominant canopy species of the wet Miombo woodlands in the Copperbelt Province of Zambia. Object-based image analysis (OBIA) with a random forest algorithm was used on single date, multi-date, and multi-feature UAS imagery for classifying the dominant canopy tree species of the wet Miombo woodlands. It was found that classification accuracy varies both with dates and features used. For example, the August image yielded the best single date overall accuracy (OA, 80.12%, 0.68 kappa), compared to October (73.25% OA, 0.59 kappa) and May (76.64% OA, 0.63 kappa). The use of a three-date image combination improved the classification accuracy to 84.25% OA and 0.72 kappa. After adding spectral indices to multi-date image combination, the accuracy was further improved to 87.07% and 0.83 kappa. The results highlight the potential of using multispectral UAS imagery and phenology in mapping individual tree species in the Miombo ecoregion. It also provides guidance for future studies using multispectral UAS for sustainable management of Miombo tree species.

Remodeling of colon plasma cell repertoire within ulcerative colitis patients.

Plasma cells (PCs) constitute a significant fraction of colonic mucosal cells and contribute to inflammatory infiltrates in ulcerative colitis (UC). While gut PCs secrete bacteria-targeting IgA antibodies, their role in UC pathogenesis is unknown. We performed single-cell V(D)J- and RNA-seq on sorted B cells from the colon of healthy individuals and patients with UC. A large fraction of B cell clones is shared between different colon regions, but inflammation in UC broadly disrupts this landscape, causing transcriptomic changes characterized by an increase in the unfolded protein response (UPR) and antigen presentation genes, clonal expansion, and isotype skewing from IgA1 and IgA2 to IgG1. We also directly expressed and assessed the specificity of 152 mAbs from expanded PC clones. These mAbs show low polyreactivity and autoreactivity and instead target both shared bacterial antigens and specific bacterial strains. Altogether, our results characterize the microbiome-specific colon PC response and how its disruption might contribute to inflammation in UC.

Multitemporal lidar captures heterogeneity in fuel loads and consumption on the Kaibab Plateau.

Background: Characterization of physical fuel distributions across heterogeneous landscapes is needed to understand fire behavior, account for smoke emissions, and manage for ecosystem resilience. Remote sensing measurements at various scales inform fuel maps for improved fire and smoke models. Airborne lidar that directly senses variation in vegetation height and density has proven to be especially useful for landscape-scale fuel load and consumption mapping. Here we predicted field-observed fuel loads from airborne lidar and Landsat-derived fire history metrics with random forest (RF) modeling. RF models were then applied across multiple lidar acquisitions (years 2012, 2019, 2020) to create fuel maps across our study area on the Kaibab Plateau in northern Arizona, USA. We estimated consumption across the 2019 Castle and Ikes Fires by subtracting 2020 fuel load maps from 2019 fuel load maps and examined the relationship between mapped surface fuels and years since fire, as recorded in the Monitoring Trends in Burn Severity (MTBS) database. Results: R-squared correlations between predicted and ground-observed fuels were 50, 39, 59, and 48% for available canopy fuel, 1- to 1000-h fuels, litter and duff, and total surface fuel (sum of 1- to 1000-h, litter and duff fuels), respectively. Lidar metrics describing overstory distribution and density, understory density, Landsat fire history metrics, and elevation were important predictors. Mapped surface fuel loads were positively and nonlinearly related to time since fire, with asymptotes to stable fuel loads at 10-15 years post fire. Surface fuel consumption averaged 16.1 and 14.0 Mg ha- 1 for the Castle and Ikes Fires, respectively, and was positively correlated with the differenced Normalized Burn Ratio (dNBR). We estimated surface fuel consumption to be 125.3 ± 54.6 Gg for the Castle Fire and 27.6 ± 12.0 Gg for the portion of the Ikes Fire (42%) where pre- and post-fire airborne lidar were available. Conclusions: We demonstrated and reinforced that canopy and surface fuels can be predicted and mapped with moderate accuracy using airborne lidar data. Landsat-derived fire history helped account for spatial and temporal variation in surface fuel loads and allowed us to describe temporal trends in surface fuel loads. Our fuel load and consumption maps and methods have utility for land managers and researchers who need landscape-wide estimates of fuel loads and emissions. Fuel load maps based on active remote sensing can be used to inform fuel management decisions and assess fuel structure goals, thereby promoting ecosystem resilience. Multitemporal lidar-based consumption estimates can inform emissions estimates and provide independent validation of conventional fire emission inventories. Our methods also provide a remote sensing framework that could be applied in other areas where airborne lidar is available for quantifying relationships between fuels and time since fire across landscapes.

Antecedentes: La caracterización de la distribución física de los combustibles a través de paisajes heterogéneos es necesaria para entender el comportamiento del fuego, contabilizar las emisiones de humo, y manejar los ecosistemas para su resiliencia. Las mediciones mediante sensores remotos a varias escalas, aportan mapas para mejorar modelos de fuegos y dispersión de humos. Las mediciones con LIDAR aerotransportados que determinan directamente variaciones en altura y densidad de la vegetación, han probado ser especialmente útiles para el mapeo de la carga y el consumo de combustible a escala de paisaje. Predijimos la carga de combustibles en la planicie de Kaibab en el norte de Arizona, en los EEUU, estimamos el consumo a través de los incendios de Castle e Ikes de 2019, mediante la substracción de la carga de mapas de carga del 2020 menos los de 2019, y examinamos las relaciones entre el mapeo de los combustibles superficiales y años desde el fuego, registrados en la base de datos titulada Monitoreo de las Tendencias de la Severidad de los incendios (MTBS). Resultados: Las correlaciones de R2 entre valores de cargas predichos y aquellos de observaciones de campo fueron 50, 39, 59, y 48% para combustible disponible en el dosel, combustibles de 1 a 1000 h, mantillo y hojarasca por debajo del mantillo (duff), y combustible total superficial (la suma de combustibles de 1 a 1000 h y del mantillo y la hojarasca subyacente), respectivamente. Las medidas del LIDAR que describían la distribución del dosel y su densidad, la densidad del sotobosque, las medidas históricas de fuego provistas por el Landsat y la altura (elevación) fueron predictores importantes. Las cargas de combustibles mapeadas fueron positivamente y no linealmente relacionadas al tiempo desde el fuego, con asíntotas hacia cargas de combustible estables entre 10 y 15 años post fuego. El consumo de la carga de combustibles en superficie promedió 16,1 y 14,0 Mg por ha para los incendios de Castle e Ikes, respectivamente y fue positivamente correlacionada con la diferencia normalizada de la relación de quema (dNBR). Estimamos que el consumo del combustible superficial fue de 125,3 ± 54,6 Gg para el incendio de Castle y 27,6 ± 12,0 Gg para la porción del incendio de Ikes (42%), del cual los datos de LIDAR aerotransportados (pre y post fuego), estaban disponibles. Conclusiones: Demostramos y reforzamos que tanto el dosel como los combustibles superficiales pueden ser predichos y mapeados con una moderada precisión usando datos de LIDAR aerotransportados. Las medidas históricas de fuego provistas por el Landsat ayudaron a determinar la variación espacial y temporal de la carga de los combustibles superficiales y nos permitieron describir tendencias temporales en las cargas de combustible superficiales. Nuestros mapas y métodos de consumo y cargas de combustible son de utilidad para los gestores de recursos e investigadores que necesitan de estimaciones amplias de carga de combustible y emisiones a escala de paisaje. Los mapas de carga de combustibles basados en sensores remotos activos pueden ser usados para informar sobre decisiones de manejo de combustible y determinar metas de estructuras de cargas, promoviendo de esa manera la resiliencia del ecosistema. Las estimaciones de consumo basadas en LIDAR multitemporal pueden informar sobre estimaciones de emisiones y proveer de una validación de inventarios convencionales de emisiones por fuegos. Nuestros métodos también proveen de un marco conceptual de sensores remotos que pueden ser aplicados en otras áreas donde el LIDAR aerotransportado está disponible para cuantificar relaciones entre combustibles y tiempo desde el fuego en diferentes paisajes.

B cell genomics behind cross-neutralization of SARS-CoV-2 variants and SARS-CoV.

Monoclonal antibodies (mAbs) are a focus in vaccine and therapeutic design to counteract severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and its variants. Here, we combined B cell sorting with single-cell VDJ and RNA sequencing (RNA-seq) and mAb structures to characterize B cell responses against SARS-CoV-2. We show that the SARS-CoV-2-specific B cell repertoire consists of transcriptionally distinct B cell populations with cells producing potently neutralizing antibodies (nAbs) localized in two clusters that resemble memory and activated B cells. Cryo-electron microscopy structures of selected nAbs from these two clusters complexed with SARS-CoV-2 spike trimers show recognition of various receptor-binding domain (RBD) epitopes. One of these mAbs, BG10-19, locks the spike trimer in a closed conformation to potently neutralize SARS-CoV-2, the recently arising mutants B.1.1.7 and B.1.351, and SARS-CoV and cross-reacts with heterologous RBDs. Together, our results characterize transcriptional differences among SARS-CoV-2-specific B cells and uncover cross-neutralizing Ab targets that will inform immunogen and therapeutic design against coronaviruses.

Hundred year projected carbon loads and species compositions for four National Forests in the northwestern USA.

BACKGROUND: Forests are an important component of the global carbon balance, and climate sensitive growth and yield models are an essential tool when predicting future forest conditions. In this study, we used the dynamic climate capability of the Forest Vegetation Simulator (FVS) to simulate future (100 year) forest conditions on four National Forests in the northwestern USA: Payette National Forest (NF), Ochoco NF, Gifford Pinchot NF, and Siuslaw NF. Using Forest Inventory and Analysis field plots, aboveground carbon estimates and species compositions were simulated with Climate-FVS for the period between 2016 and 2116 under a no climate change scenario and a future climate scenario. We included a sensitivity analysis that varied calculated disturbance probabilities and the dClim rule, which is one method used by Climate-FVS to introduce climate-related mortality. The dClim rule initiates mortality when the predicted climate change at a site is greater than the change in climate associated with a predetermined shift in elevation. RESULTS: Results of the simulations indicated the dClim rule influenced future carbon projections more than estimates of disturbance probability. Future aboveground carbon estimates increased and species composition remained stable under the no climate change scenario. The future climate scenario we tested resulted in less carbon at the end of the projections compared to the no climate change scenarios for all cases except when the dClim rule was disengaged on the Payette NF. Under the climate change scenario, species compositions shifted to climatically adapted species or early successional species. CONCLUSION: This research highlights the need to consider climate projections in long-term planning or future forest conditions may be unexpected. Forest managers and planners could perform similar simulations and use the results as a planning tool when analyzing climate change effects at the National Forest level.

Simulating Groundcover Community Assembly in a Frequently Burned Ecosystem Using a Simple Neutral Model.

Fire is a keystone process that drives patterns of biodiversity globally. In frequently burned fire-dependent ecosystems, surface fire regimes allow for the coexistence of high plant diversity at fine scales even where soils are uniform. The mechanisms on how fire impacts groundcover community dynamics are, however, poorly understood. Because fire can act as a stochastic agent of mortality, we hypothesized that a neutral mechanism might be responsible for maintaining plant diversity. We used the demographic parameters of the unified neutral theory of biodiversity (UNTB) as a foundation to model groundcover species richness, using a southeastern US pine woodland as an example. We followed the fate of over 7,000 individuals of 123 plant species for 4 years and two prescribed burns in frequently burned Pinus palustris sites in northwest FL, USA. Using these empirical data and UNTB-based assumptions, we developed two parsimonious autonomous agent models, which were distinct by spatially explicit and implicit local recruitment processes. Using a parameter sensitivity test, we examined how empirical estimates, input species frequency distributions, and community size affected output species richness. We found that dispersal limitation was the most influential parameter, followed by mortality and birth, and that these parameters varied based on scale of the frequency distributions. Overall, these nominal parameters were useful for simulating fine-scale groundcover communities, although further empirical analysis of richness patterns, particularly related to fine-scale burn severity, is needed. This modeling framework can be utilized to examine our premise that localized groundcover assemblages are neutral communities at high fire frequencies, as well as to examine the extent to which niche-based dynamics determine community dynamics when fire frequency is altered.

Fire behavior and smoke modeling: Model improvement and measurement needs for next-generation smoke research and forecasting systems.

There is an urgent need for next-generation smoke research and forecasting (SRF) systems to meet the challenges of the growing air quality, health, and safety concerns associated with wildland fire emissions. This review paper presents simulations and experiments of hypothetical prescribed burns with a suite of selected fire behavior and smoke models and identifies major issues for model improvement and the most critical observational needs. The results are used to understand the new and improved capability required for the next-generation SRF systems and to support the design of the Fire and Smoke Model Evaluation Experiment (FASMEE) and other field campaigns. The next-generation SRF systems should have more coupling of fire, smoke, and atmospheric processes to better simulate and forecast vertical smoke distributions and multiple sub-plumes, dynamical and high-resolution fire processes, and local and regional smoke chemistry during day and night. The development of the coupling capability requires comprehensive and spatially and temporally integrated measurements across the various disciplines to characterize flame and energy structure (e.g., individual cells, vertical heat profile and the height of well mixing flaming gases), smoke structure (vertical distributions and multiple sub-plumes), ambient air processes (smoke eddy, entrainment and radiative effects of smoke aerosols), fire emissions (for different fuel types and combustion conditions from flaming to residual smoldering), as well as night-time processes (smoke drainage and super-fog formation).

The Fire and Smoke Model Evaluation Experiment-A Plan for Integrated, Large Fire-Atmosphere Field Campaigns.

The Fire and Smoke Model Evaluation Experiment (FASMEE) is designed to collect integrated observations from large wildland fires and provide evaluation datasets for new models and operational systems. Wildland fire, smoke dispersion, and atmospheric chemistry models have become more sophisticated, and next-generation operational models will require evaluation datasets that are coordinated and comprehensive for their evaluation and advancement. Integrated measurements are required, including ground-based observations of fuels and fire behavior, estimates of fire-emitted heat and emissions fluxes, and observations of near-source micrometeorology, plume properties, smoke dispersion, and atmospheric chemistry. To address these requirements the FASMEE campaign design includes a study plan to guide the suite of required measurements in forested sites representative of many prescribed burning programs in the southeastern United States and increasingly common high-intensity fires in the western United States. Here we provide an overview of the proposed experiment and recommendations for key measurements. The FASMEE study provides a template for additional large-scale experimental campaigns to advance fire science and operational fire and smoke models.

Supervised spatial classification of multispectral LiDAR data in urban areas.

Multispectral LiDAR (light detection and ranging) data have been initially used for land cover classification. However, there are still high classification uncertainties, especially in urban areas, where objects are often mixed and confounded. This study investigated the efficiency of combining advanced statistical methods and LiDAR metrics derived from multispectral LiDAR data for improving land cover classification accuracy in urban areas. The study area is located in Oshawa, Ontario, Canada, on the Lake Ontario shoreline. Multispectral Optech Titan LiDAR data over the study area were acquired on 3 September 2014 in a single strip of 3 km2. Using the channels at 1,550 nm (C1), 1,064 nm (C2) and 532 nm (C3), LiDAR intensity data, normalized digital surface model (nDSM), pseudo normalized difference vegetation index (PseudoNDVI), morphological profiles (MP), and a novel hierarchical morphological profiles (HMP) were derived and used as features for the classification. A support vector machine classifier with a radial basis function (RBF) kernel was applied in the classification stage, where the optimal parameters for the classifier were selected by a grid search procedure. The combination of intensity, pseudoNDVI, nDSM and HMP resulted in the best land cover classification, with an overall accuracy of 93.28%.

Estimating Stand Height and Tree Density in Pinus taeda plantations using in-situ data, airborne LiDAR and k-Nearest Neighbor Imputation.

Accurate forest inventory is of great economic importance to optimize the entire supply chain management in pulp and paper companies. The aim of this study was to estimate stand dominate and mean heights (HD and HM) and tree density (TD) of Pinus taeda plantations located in South Brazil using in-situ measurements, airborne Light Detection and Ranging (LiDAR) data and the non- k-nearest neighbor (k-NN) imputation. Forest inventory attributes and LiDAR derived metrics were calculated at 53 regular sample plots and we used imputation models to retrieve the forest attributes at plot and landscape-levels. The best LiDAR-derived metrics to predict HD, HM and TD were H99TH, HSD, SKE and HMIN. The Imputation model using the selected metrics was more effective for retrieving height than tree density. The model coefficients of determination (adj.R2) and a root mean squared difference (RMSD) for HD, HM and TD were 0.90, 0.94, 0.38m and 6.99, 5.70, 12.92%, respectively. Our results show that LiDAR and k-NN imputation can be used to predict stand heights with high accuracy in Pinus taeda. However, furthers studies need to be realized to improve the accuracy prediction of TD and to evaluate and compare the cost of acquisition and processing of LiDAR data against the conventional inventory procedures.

Estimating Stand Height and Tree Density in Pinus taeda plantations using in-situ data, airborne LiDAR and k-Nearest Neighbor Imputation

ABSTRACT Accurate forest inventory is of great economic importance to optimize the entire supply chain management in pulp and paper companies. The aim of this study was to estimate stand dominate and mean heights (HD and HM) and tree density (TD) of Pinus taeda plantations located in South Brazil using in-situ measurements, airborne Light Detection and Ranging (LiDAR) data and the non- k-nearest neighbor (k-NN) imputation. Forest inventory attributes and LiDAR derived metrics were calculated at 53 regular sample plots and we used imputation models to retrieve the forest attributes at plot and landscape-levels. The best LiDAR-derived metrics to predict HD, HM and TD were H99TH, HSD, SKE and HMIN. The Imputation model using the selected metrics was more effective for retrieving height than tree density. The model coefficients of determination (adj.R2) and a root mean squared difference (RMSD) for HD, HM and TD were 0.90, 0.94, 0.38m and 6.99, 5.70, 12.92%, respectively. Our results show that LiDAR and k-NN imputation can be used to predict stand heights with high accuracy in Pinus taeda. However, furthers studies need to be realized to improve the accuracy prediction of TD and to evaluate and compare the cost of acquisition and processing of LiDAR data against the conventional inventory procedures.

Modeling and mapping basal area of Pinus taeda L. plantation using airborne LiDAR data

ABSTRACT Basal area (BA) is a good predictor of timber stand volume and forest growth. This study developed predictive models using field and airborne LiDAR (Light Detection and Ranging) data for estimation of basal area in Pinus taeda plantation in south Brazil. In the field, BA was collected from conventional forest inventory plots. Multiple linear regression models for predicting BA from LiDAR-derived metrics were developed and evaluated for predictive power and parsimony. The best model to predict BA from a family of six models was selected based on corrected Akaike Information Criterion (AICc) and assessed by the adjusted coefficient of determination (adj. R²) and root mean square error (RMSE). The best model revealed an adj. R²=0.93 and RMSE=7.74%. Leave one out cross-validation of the best regression model was also computed, and revealed an adj. R² and RMSE of 0.92 and 8.31%, respectively. This study showed that LiDAR-derived metrics can be used to predict BA in Pinus taeda plantations in south Brazil with high precision. We conclude that there is good potential to monitor growth in this type of plantations using airborne LiDAR. We hope that the promising results for BA modeling presented herein will stimulate to operate this technology in Brazil.

Modeling and mapping basal area of Pinus taeda L. plantation using airborne LiDAR data.

Basal area (BA) is a good predictor of timber stand volume and forest growth. This study developed predictive models using field and airborne LiDAR (Light Detection and Ranging) data for estimation of basal area in Pinus taeda plantation in south Brazil. In the field, BA was collected from conventional forest inventory plots. Multiple linear regression models for predicting BA from LiDAR-derived metrics were developed and evaluated for predictive power and parsimony. The best model to predict BA from a family of six models was selected based on corrected Akaike Information Criterion (AICc) and assessed by the adjusted coefficient of determination (adj. R²) and root mean square error (RMSE). The best model revealed an adj. R²=0.93 and RMSE=7.74%. Leave one out cross-validation of the best regression model was also computed, and revealed an adj. R² and RMSE of 0.92 and 8.31%, respectively. This study showed that LiDAR-derived metrics can be used to predict BA in Pinus taeda plantations in south Brazil with high precision. We conclude that there is good potential to monitor growth in this type of plantations using airborne LiDAR. We hope that the promising results for BA modeling presented herein will stimulate to operate this technology in Brazil.

Combined effect of pulse density and grid cell size on predicting and mapping aboveground carbon in fast-growing Eucalyptus forest plantation using airborne LiDAR data.

BACKGROUND: LiDAR remote sensing is a rapidly evolving technology for quantifying a variety of forest attributes, including aboveground carbon (AGC). Pulse density influences the acquisition cost of LiDAR, and grid cell size influences AGC prediction using plot-based methods; however, little work has evaluated the effects of LiDAR pulse density and cell size for predicting and mapping AGC in fast-growing Eucalyptus forest plantations. The aim of this study was to evaluate the effect of LiDAR pulse density and grid cell size on AGC prediction accuracy at plot and stand-levels using airborne LiDAR and field data. We used the Random Forest (RF) machine learning algorithm to model AGC using LiDAR-derived metrics from LiDAR collections of 5 and 10 pulses m-2 (RF5 and RF10) and grid cell sizes of 5, 10, 15 and 20 m. RESULTS: The results show that LiDAR pulse density of 5 pulses m-2 provides metrics with similar prediction accuracy for AGC as when using a dataset with 10 pulses m-2 in these fast-growing plantations. Relative root mean square errors (RMSEs) for the RF5 and RF10 were 6.14 and 6.01%, respectively. Equivalence tests showed that the predicted AGC from the training and validation models were equivalent to the observed AGC measurements. The grid cell sizes for mapping ranging from 5 to 20 also did not significantly affect the prediction accuracy of AGC at stand level in this system. CONCLUSION: LiDAR measurements can be used to predict and map AGC across variable-age Eucalyptus plantations with adequate levels of precision and accuracy using 5 pulses m-2 and a grid cell size of 5 m. The promising results for AGC modeling in this study will allow for greater confidence in comparing AGC estimates with varying LiDAR sampling densities for Eucalyptus plantations and assist in decision making towards more cost effective and efficient forest inventory.

Disaggregating Tropical Disease Prevalence by Climatic and Vegetative Zones within Tropical West Africa.

Tropical infectious disease prevalence is dependent on many socio-cultural determinants. However, rainfall and temperature frequently underlie overall prevalence, particularly for vector-borne diseases. As a result these diseases have increased prevalence in tropical as compared to temperate regions. Specific to tropical Africa, the tendency to incorrectly infer that tropical diseases are uniformly prevalent has been partially overcome with solid epidemiologic data. This finer resolution data is important in multiple contexts, including understanding risk, predictive value in disease diagnosis, and population immunity. We hypothesized that within the context of a tropical climate, vector-borne pathogen prevalence would significantly differ according to zonal differences in rainfall, temperature, relative humidity and vegetation condition. We then determined if these environmental data were predictive of pathogen prevalence. First we determined the prevalence of three major pathogens of cattle, Anaplasma marginale, Babesia bigemina and Theileria spp, in the three vegetation zones where cattle are predominantly raised in Ghana: Guinea savannah, semi-deciduous forest, and coastal savannah. The prevalence of A. marginale was 63%, 26% for Theileria spp and 2% for B. bigemina. A. marginale and Theileria spp. were significantly more prevalent in the coastal savannah as compared to either the Guinea savanna or the semi-deciduous forest, supporting acceptance of the first hypothesis. To test the predictive power of environmental variables, the data over a three year period were considered in best subsets multiple linear regression models predicting prevalence of each pathogen. Corrected Akaike Information Criteria (AICc) were assigned to the alternative models to compare their utility. Competitive models for each response were averaged using AICc weights. Rainfall was most predictive of pathogen prevalence, and EVI also contributed to A. marginale and B. bigemina prevalence. These findings support the utility of environmental data for understanding vector-borne disease epidemiology on a regional level within a tropical environment.