Multiple polymorphic sites at the ITS and ATAN loci in cultured isolates of Perkinsus marinus.

Sequence analysis of genomic DNA from the protozoan parasite Perkinsus marinus at two loci revealed genetic polymorphisms within and among different cultured isolates. Genomic DNA from 12 Perkinsus marinus isolates was amplified at the internal transcribed spacer region and at an anonymous locus previously identified to contain polymorphisms by restriction fragment length polymorphism analysis. Fourteen polymorphic nucleotide positions were identified at the internal transcribed spacer region; eight in internal transcribed spacer 1 and six in internal transcribed spacer 2. Thirteen polymorphic nucleotide sites were identified within the anonymous locus. In some instances, more than three different sequences were observed at both the internal transcribed spacer region and at the anonymous locus from a single clonal isolate, suggesting the possibility of recombination in cultured cells and/or strand jumping during the polymerase chain reaction. Intra-isolate sequence variation (3.46% for the anonymous locus and 3.08% for internal transcribed spacer 1) was in several cases as high as inter-isolate sequence variation, even in one isolate where recombination was not evident. High intra- and inter-isolate variation detected at both loci demonstrates the importance of determining the genetic variation of each locus prior to development of sequence-based molecular diagnostics.

Two epizootic diseases in Chesapeake Bay commercial clams, Mya arenaria and Tagelus plebeius.

Declining Chesapeake Bay harvests of softshell clams, together with historical and emerging reports of epizootic diseases in Mya arenaria, prompted a survey in summer 2000 of the health status of selected commercial clam populations. All sampled populations (8 M arenaria softshell clam, 2 Tagelus plebeius razor clam) were infected by Perkinsus sp. protozoans at prevalences ranging from 30 to 100% of sampled clams. Nucleotide sequences for the internal transcribed spacer (ITS) region of the rRNA gene complex were determined for clonal in vitro Perkinsus sp. isolates propagated from both M. arenaria and T plebeius. Multiple polymorphic sequences were amplified from each isolate, but phylogenetic analysis placed all sequences into 2 clades of a monophyletic group, which included both recently described clam parasites P. chesapeaki and P. andrewsi. Sequences amplified from each clonal isolate were found in both sister clades, one containing P. andrewsi and the other P. chesapeaki. Most (7 of 8) M. arenaria samples were also affected with disseminated neoplasia (DN), at prevalences of 3 to 37%, but neither T. plebeius sample showed DN disease. Disease mortalities projected for sampled clam populations, especially those affected by both diseases, may further deplete subtidal commercial clam populations in mesohaline portions of Chesapeake Bay.