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1.
Proc Math Phys Eng Sci ; 476(2241): 20200494, 2020 Sep.
Article in English | MEDLINE | ID: mdl-33071592

ABSTRACT

We study the instability of a Bénard layer subject to a vertical uniform magnetic field, in which the fluid obeys the Maxwell-Cattaneo (MC) heat flux-temperature relation. We extend the work of Bissell (Proc. R. Soc. A 472, 20160649 (doi:10.1098/rspa.2016.0649)) to non-zero values of the magnetic Prandtl number p m . With non-zero p m , the order of the dispersion relation is increased, leading to considerably richer behaviour. An asymptotic analysis at large values of the Chandrasekhar number Q confirms that the MC effect becomes important when C Q 1/2 is O(1), where C is the MC number. In this regime, we derive a scaled system that is independent of Q. When CQ 1/2 is large, the results are consistent with those derived from the governing equations in the limit of Prandtl number p → ∞ with p m finite; here we identify a new mode of instability, which is due neither to inertial nor induction effects. In the large p m regime, we show how a transition can occur between oscillatory modes of different horizontal scale. For Q ≫ 1 and small values of p, we show that the critical Rayleigh number is non-monotonic in p provided that C > 1/6. While the analysis of this paper is performed for stress-free boundaries, it can be shown that other types of mechanical boundary conditions give the same leading-order results.

2.
Phys Rev E ; 99(5-1): 053116, 2019 May.
Article in English | MEDLINE | ID: mdl-31212482

ABSTRACT

We numerically explore the dynamics of an incompressible fluid heated from below, bounded by free-slip horizontal plates and periodic lateral boundary conditions, subject to rapid rotation about a distant axis that is tilted with respect to the gravity vector. The angle ϕ between the rotation axis and the horizontal plane measures the tilting of the rotation axis; it can be taken as a proxy for latitude if we think of a local Cartesian representation of the convective dynamics in a rotating fluid shell. The results of the simulations indicate the existence of three different convective regimes, depending on the value of ϕ: (1) sheared, intermittent large-scale winds in the direction perpendicular to the plane defined by the gravity and rotation vectors, when rotation is "horizontal" (ϕ=0^{∘}); (2) a large-scale cyclonic vortex tilted along the rotation axis, when the angle between the rotation axis and the gravity vector is relatively small (ϕ between about 45^{∘} and 90^{∘}); and (3) a new intermediate regime characterized by vertically sheared large-scale winds perpendicular to both gravity and rotation. In this regime, the winds are organized in bands that are tilted along the rotation axis, with unit horizontal wave number in the plane defined by gravity and rotation at values of ϕ less than about 60^{∘}. This intermediate solution, studied for the first time in this work, is characterized by weaker vertical heat transport than the cases with large-scale vortices. For intermediate values of ϕ (between about 45^{∘} and 60^{∘}), the banded, sheared solution coexists with the large-scale vortex solution, with different initial conditions leading to one or the other dynamical behavior. A discussion of the possible implications of these results for the dynamics of rapidly rotating planetary atmospheres is provided.

3.
Biochemistry ; 40(30): 8877-86, 2001 Jul 31.
Article in English | MEDLINE | ID: mdl-11467949

ABSTRACT

The streptogramin antibiotics were identified almost 50 years ago but have only recently found clinical use as a consequence of the increase in multidrug-resistant bacteria. Despite the fact that these antibiotics have historically not found intense clinical use, resistance to streptogramins exists. Streptogramins consist of a mixture of two components: cyclic polyunsaturated macrolactones (group A) and cyclic hexadepsipeptides (group B). The latter are cyclized through an ester bond between the hydroxyl group of an N-terminal threonine and the C-terminal carboxyl. Resistance to the B streptogramins can occur through the production of enzymes such as Vgb from Staphylococcus aureus. This enzyme had been assumed to be a lactonase that inactivates the cyclic antibiotic by linearization through hydrolytic cleavage of the ester bond. We have expressed recombinant Vgb in quantity and, using a combination of mass spectrometry, NMR, and synthesis of model depsipeptides, show unequivocally that streptogramin B inactivation does not involve hydrolysis of the ester bond. Rather, the hexadepsipeptide is linearized through an elimination reaction across the ester bond generating an N-terminal dehydrobutyrine group. Therefore, Vgb is not a hydrolase but a lyase. We also have explored the activity of Vgb orthologues present in the chromosomes of various bacteria including Bordetella pertussis and Streptomyces coelicolor and have determined that these enzymes also show streptogramin B inactivation through an elimination mechanism indistinguishable to that used by Vgb. These results demonstrate that Vgb is a member of a large group of streptogramin B lyases that are present not only in resistant clinical isolates but also in the chromosomes of many bacteria. There is therefore a significant reservoir of streptogramin resistance enzymes in the environment, which has the potential to impact the long-term utility of these antibiotics. This research establishing the molecular mechanism of streptogramin resistance therefore has the potential to be exploited in the discovery of inhibitory compounds that could rescue antibiotic activity even in the presence of resistance elements.


Subject(s)
Anti-Bacterial Agents/antagonists & inhibitors , Anti-Bacterial Agents/metabolism , Bacterial Proteins/physiology , Hemeproteins/physiology , Staphylococcus aureus/physiology , Virginiamycin/analogs & derivatives , Virginiamycin/antagonists & inhibitors , Virginiamycin/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bordetella pertussis/enzymology , Bordetella pertussis/genetics , Catalysis , Cations, Divalent/chemistry , Drug Resistance, Microbial , Hemeproteins/chemistry , Hemeproteins/genetics , Hemeproteins/metabolism , Hydrolysis , Metals/chemistry , Molecular Conformation , Nuclear Magnetic Resonance, Biomolecular , Peptides, Cyclic/antagonists & inhibitors , Peptides, Cyclic/metabolism , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Staphylococcus aureus/enzymology , Staphylococcus aureus/genetics , Streptomyces/enzymology , Streptomyces/genetics , Substrate Specificity
4.
Biophys J ; 78(5): 2418-25, 2000 May.
Article in English | MEDLINE | ID: mdl-10777737

ABSTRACT

Influenza virus hemagglutinin (HA)-mediated membrane fusion involves insertion into target membranes of a stretch of amino acids located at the N-terminus of the HA(2) subunit of HA at low pH. The pK(a) of the alpha-amino group of (1)Gly of the fusion peptide was measured using (15)N NMR. The pK(a) of this group was found to be 8.69 in the presence of DOPC (1,2-dioleoyl-sn-glycero-3-phosphocholine). The high value of this pK(a) is indicative of stabilization of the protonated form of the amine group through noncovalent interactions. The shift reagent Pr(3+) had large effects on the (15)N resonance from the alpha-amino group of Gly(1) of the fusion peptide in DOPC vesicles, indicating that the terminal amino group was exposed to the bulk solvent, even at low pH. Furthermore, electron paramagnetic resonance studies on the fusion peptide region of spin-labeled derivatives of a larger HA construct are consistent with the N-terminus of this peptide being at the depth of the phosphate headgroups. We conclude that at both neutral and acidic pH, the N-terminal of the fusion peptide is close to the aqueous phase and is protonated. Thus neither a change in the state of ionization nor a significant increase in membrane insertion of this group is associated with increased fusogenicity at low pH.


Subject(s)
Hemagglutinin Glycoproteins, Influenza Virus/chemistry , Orthomyxoviridae/chemistry , Viral Fusion Proteins/chemistry , Biophysical Phenomena , Biophysics , Electron Spin Resonance Spectroscopy , Hydrogen-Ion Concentration , Magnetic Resonance Spectroscopy , Phosphatidylcholines/chemistry , Solvents
5.
Acta Otolaryngol ; 120(7): 849-54, 2000 Oct.
Article in English | MEDLINE | ID: mdl-11132719

ABSTRACT

Auditory neuropathy is characterized by mild-to-moderate pure-tone hearing loss, poor speech discrimination out of proportion with this loss, absent or abnormal auditory brainstem responses and normal outer hair cell function as measured by otoacoustic emissions and cochlear microphonics. We followed three patients in our clinic whom we classified as auditory neuropathy patients. These patients also complained of balance disorders and we report our auditory and vestibular system analyses of these patients. The data presented herein include results of audiometric tests (serial pure-tone audiometry and speech discrimination tests), otoacoustic emissions, auditory-evoked brainstem responses and vestibular function tests (clinical tests of balance, electronystagmography, damped rotation tests and vestibular-evoked myogenic potentials). In all patients, pure-tone audiometry revealed mild-to-moderate sensorineural hearing loss, markedly poor speech discrimination scores and absent auditory-evoked brainstem responses, all in the presence of normal otoacoustic emissions. Balance tests (caloric tests and damped rotation test) were abnormal. Saccades, smooth pursuit eye movements and optokinetic nystagmus were normal in all patients. Neurological and motor system evaluations were normal in all patients. These three auditory neuropathy patients manifest a disorder of cochlear nerve function in the presence of normal outer hair cell activity. They additionally manifest a disorder of the vestibular nerve and its end organs. We conclude that, in patients with isolated auditory neuropathy, the vestibular branch of the VIIIth cranial nerve and its innervated structures may also be affected. We suggest the use of the term "cochlear neuropathy" to characterize those patients with involvement of only the auditory branch of the VIIIth cranial nerve and its innervation.


Subject(s)
Vestibule, Labyrinth/physiopathology , Vestibulocochlear Nerve Diseases/physiopathology , Aged , Evoked Potentials, Auditory , Female , Humans , Middle Aged
6.
J Biol Chem ; 274(43): 30697-706, 1999 Oct 22.
Article in English | MEDLINE | ID: mdl-10521458

ABSTRACT

The aminoglycoside phosphotransferases (APHs) are widely distributed among pathogenic bacteria and are employed to covalently modify, and thereby detoxify, the clinically relevant aminoglycoside antibiotics. The crystal structure for one of these aminoglycoside kinases, APH(3')-IIIa, has been determined in complex with ADP and analysis of the electrostatic surface potential indicates that there is a large anionic depression present adjacent to the terminal phosphate group of the nucleotide. This region also includes a conserved COOH-terminal alpha-helix that contains the COOH-terminal residue Phe(264). We report here mutagenesis and computer modeling studies aimed at examining the mode of aminoglycoside binding to APH(3')-IIIa. Specifically, seven site mutants were studied, five from the COOH-terminal helix (Asp(261), Glu(262), and Phe(264)), and two additional residues that line the wall of the anionic depression (Tyr(55) and Arg(211)). Using a molecular modeling approach, six ternary complexes of APH(3')-IIIa.ATP with the antibiotics, kanamycin, amikacin, butirosin, and ribostamycin were independently constructed and these agree well with the mutagenesis data. The results obtained show that the COOH-terminal carboxylate of Phe(264) is critical for proper function of the enzyme. Furthermore, these studies demonstrate that there exists multiple binding modes for the aminoglycosides, which provides a molecular basis for the broad substrate- and regiospecificity observed for this enzyme.


Subject(s)
Anti-Bacterial Agents/metabolism , Anti-Bacterial Agents/pharmacology , Escherichia coli/drug effects , Kanamycin Kinase/chemistry , Kanamycin Kinase/metabolism , Amino Acid Sequence , Aminoglycosides , Anti-Bacterial Agents/chemistry , Binding Sites , Carbohydrate Sequence , Conserved Sequence , Escherichia coli/genetics , Kanamycin Kinase/genetics , Microbial Sensitivity Tests , Models, Molecular , Molecular Conformation , Molecular Sequence Data , Molecular Structure , Mutagenesis, Site-Directed , Nuclear Magnetic Resonance, Biomolecular , Phenylalanine , Polymerase Chain Reaction , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Sequence Deletion , Static Electricity
7.
J Paediatr Child Health ; 35(1): 55-9, 1999 Feb.
Article in English | MEDLINE | ID: mdl-10234636

ABSTRACT

OBJECTIVE: To evaluate the clinical and diagnostic features of children presenting with haemophagocytic lymphohistiocytosis (HLH), evolution of the disease and outcomes in response to treatment. METHODOLOGY: The medical records of 12 children, aged 5 weeks to 13 years at diagnosis, with HLH managed at a single institution were reviewed. RESULTS: Presenting features were fever, hepatosplenomegaly, pancytopenia and hypertriglyceridemia or hypofibrinogenemia. Nine patients (75%) developed central nervous system (CNS) disease. Only one child with CNS disease survived. Five children had complete responses to therapy (42%), but all relapsed at a median of 1.5 months after starting treatment (range 2 weeks to 5 months). Two of the children treated are long-term survivors (17%), both after allogeneic bone marrow transplantation. All deaths occurred in the context of active disease. CONCLUSIONS: Haemophagocytic lymphohistiocytosis is a disease with a poor prognosis. Central nervous system complications are common and response to treatment usually is transient. This study provides support for the use of immunomodulatory therapy for remission introduction followed by consideration of allogeneic bone marrow transplantation.


Subject(s)
Histiocytosis, Non-Langerhans-Cell/diagnosis , Histiocytosis, Non-Langerhans-Cell/therapy , Adolescent , Antineoplastic Agents/therapeutic use , Bone Marrow Examination , Bone Marrow Transplantation , Child , Child, Preschool , Combined Modality Therapy , Diagnosis, Differential , Disease Progression , Female , Histiocytosis, Non-Langerhans-Cell/complications , Humans , Immunosuppressive Agents/therapeutic use , Infant , Male , Prognosis , Remission Induction/methods , Retrospective Studies , Survival Analysis , Treatment Outcome
8.
Chem Biol ; 6(2): 99-110, 1999 Feb.
Article in English | MEDLINE | ID: mdl-10021417

ABSTRACT

BACKGROUND: High-level gentamicin resistance in enterococci and staphylococci is conferred by AAC(6')-APH(2"), an enzyme with 6'-N-acetyltransferase and 2"-O-phosphotransferase activities. The presence of this enzyme in pathogenic gram-positive bacteria prevents the successful use of gentamicin C and most other aminoglycosides as therapeutic agents. RESULTS: In an effort to understand the mechanism of aminoglycoside modification, we expressed AAC(6')-APH(2") in Bacillus subtilis. The purified enzyme is monomeric with a molecular mass of 57 kDa and displays both the expected aminoglycoside N-acetyltransferase and O-phosphotransferase activities. Structure-function analysis with various aminoglycosides substrates reveals an enzyme with broad specificity in both enzymatic activities, accounting for AAC(6')-APH(2")'s dramatic negative impact on clinical aminoglycoside therapy. Both lividomycin A and paromomycin, aminoglycosides lacking a 6'-amino group, were acetylated by AAC(6')-APH(2"). The infrared spectrum of the product of paromomycin acetylation yielded a signal consistent with O-acetylation. Mass spectral and nuclear magnetic resonance analysis of the products of neomycin phosphorylation indicated that phosphoryl transfer occurred primarily at the 3'-OH of the 6-aminohexose ring A, and that some diphosphorylated material was also present with phosphates at the 3'-OH and the 3"'-OH of ring D, both unprecedented observations for this enzyme. Furthermore, the phosphorylation site of lividomycin A was determined to be the 5"-OH of the pentose ring C. CONCLUSIONS: The bifunctional AAC(6')-APH(2") has the capacity to inactivate virtually all clinically important aminoglycosides through N- and O-acetylation and phosphorylation of hydroxyl groups. The extremely broad substrate specificity of this enzyme will impact on future development of aminoglycosides and presents a significant challenge for antibiotic design.


Subject(s)
Acetyltransferases/metabolism , Anti-Bacterial Agents/metabolism , Enterococcus/enzymology , Phosphotransferases (Alcohol Group Acceptor)/metabolism , Staphylococcus/enzymology , Acetylation , Acetyltransferases/biosynthesis , Acetyltransferases/isolation & purification , Bacillus subtilis/enzymology , Chromatography, Thin Layer , Drug Resistance, Microbial/genetics , Enterococcus/drug effects , Kinetics , Magnetic Resonance Spectroscopy , Neomycin/metabolism , Phosphorylation , Phosphotransferases (Alcohol Group Acceptor)/biosynthesis , Phosphotransferases (Alcohol Group Acceptor)/isolation & purification , Staphylococcus/drug effects , Substrate Specificity
9.
Biophys J ; 76(1 Pt 1): 387-99, 1999 Jan.
Article in English | MEDLINE | ID: mdl-9876150

ABSTRACT

A sample preparation method using spherical glass ampoules has been used to achieve 1.5-Hz resolution in 1H magic-angle spinning (MAS) nuclear magnetic resonance (NMR) spectra of aqueous multilamellar dispersions of 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), serving to differentiate between slowly exchanging interlamellar and bulk water and to reveal new molecular-level information about hydration phenomena in these model biological membranes. The average numbers of interlamellar water molecules in multilamellar vesicles (MLVs) of DOPC and POPC were found to be 37.5 +/- 1 and 37.2 +/- 1, respectively, at a spinning speed of 3 kHz. Even at speeds as high as 9 kHz, the number of interlamellar waters remained as high as 31, arguing against dehydration effects for DOPC and POPC. Both homonuclear and heteronuclear nuclear Overhauser enhancement spectroscopy (NOESY and HOESY) were used to establish the location of water near the headgroup of a PC bilayer. 1H NMR comparisons of DOPC with a lipid that can hydrogen bond (monomethyldioleoylphosphatidylethanolamine, MeDOPE) showed the following trends: 1) the interlamellar water resonance was shifted to lower frequency for DOPC but to higher frequency for MeDOPE, 2) the chemical shift variation with temperature for interlamellar water was less than that of bulk water for MeDOPE MLVs, 3) water exchange between the two lipids was rapid on the NMR time scale if they were mixed in the same bilayer, 4) water exchange was slow if they were present in separate MLVs, and 5) exchange between bulk and interlamellar water was found by two-dimensional exchange experiments to be slow, and the exchange rate should be less than 157 Hz. These results illustrate the utility of ultra-high-resolution 1H MAS NMR for determining the nature and extent of lipid hydration as well as the arrangement of nuclei at the membrane/water interface.


Subject(s)
Magnetic Resonance Spectroscopy/methods , Phospholipids/chemistry , Biophysical Phenomena , Biophysics , Hydrogen/chemistry , Lipid Bilayers/chemistry , Liposomes/chemistry , Permeability , Phosphatidylcholines/chemistry , Phosphatidylethanolamines/chemistry , Water/chemistry
10.
J Biol Chem ; 273(24): 14788-95, 1998 Jun 12.
Article in English | MEDLINE | ID: mdl-9614079

ABSTRACT

The bacterium Legionella pneumophila is the responsible agent for Legionnaires' disease and has recently been shown to harbor a gene encoding a kinase that confers resistance to the aminoglycoside antibiotic spectinomycin (Suter, T. M., Viswanathan, V. K., and Cianciotto, N. P. (1997) Antimicrob. Agents Chemother. 41, 1385-1388). We report the overproduction, purification, and characterization of this spectinomycin kinase from an expressing system in Escherichia coli. The purified protein shows stringent substrate specificity for spectinomycin with Km = 21.5 microM and kcat = 24.2 s-1 and does not bind other aminoglycosides including kanamycin, amikacin, neomycin, butirosin, streptomycin, or apramycin. Purification of spectinomycin phosphate followed by characterization by mass spectrometry and 1H, 13C, and 31P NMR established the site of phosphorylation to be at the hydroxyl group at position 9. Thus this enzyme is designated APH(9)-Ia (where APH is aminoglycoside kinase). The enzyme was inactivated by the electrophilic ATP analogue 5'-[p-(fluorosulfonyl)benzoyl]adenosine, consistent with a nucleophilic residue such as Lys lining the nucleotide binding pocket. Site-directed mutagenesis of Lys-52 and Asp-212 to Ala confirmed that these residues were important for catalysis, with Lys-52 playing a potential role in ATP binding and Asp-212 in phosphoryl transfer. Thio and solvent isotope effect experiments in the presence of either Mg2+ or Mn2+ were consistent with a kinetic mechanism in which phosphate transfer does not contribute significantly to the rate-limiting step. These results establish that APH(9)-Ia is a highly specific antibiotic resistance kinase and provides the requisite mechanistic information for future structural studies.


Subject(s)
Adenosine/analogs & derivatives , Legionella pneumophila/enzymology , Phosphotransferases (Alcohol Group Acceptor)/chemistry , Adenosine/pharmacology , Adenosine Triphosphate/analogs & derivatives , Adenosine Triphosphate/pharmacology , Aminoglycosides , Anti-Bacterial Agents/metabolism , Bacterial Proteins/chemistry , Drug Resistance/physiology , Kinetics , Legionnaires' Disease/microbiology , Magnetic Resonance Spectroscopy , Mutagenesis, Site-Directed/genetics , Phosphorylation , Recombinant Proteins/chemistry , Sequence Alignment , Substrate Specificity
11.
Planta ; 201(1): 27-35, 1997.
Article in English | MEDLINE | ID: mdl-9004548

ABSTRACT

In Ricinus communis L. (castor bean) endosperms, two classes of Late Embryogenesis Abundant (Lea) transcripts were first detected during mid-development (at 30-35 days after pollination, DAP) and peaked at 50 DAP, just prior to the onset of desiccation. Most of the Class I mRNAs declined substantially during desiccation itself; Class II mRNAs remained abundant in the mature dry (60 DAP) seed. Following imbibition, all Lea mRNAs abundant in the mature dry seed declined rapidly (within 5-24 h). Premature drying of developing 35-DAP seeds resulted in the loss of storage-protein mRNAs (Leg B Mat I); following rehydration, mRNAs encoding post-germinative proteins (Germ D91, D30 and D38) increased in the endosperm. The Lea mRNAs present in the developing fresh seed at 35 DAP were preserved, but did not increase in response to premature desiccation; upon rehydration these Lea mRNAs declined within 5 h. During seed development, substantial changes occurred in the synthesis of a subset of LEA proteins referred to as "dehydrins'; in particular, new dehydrin polypeptides were induced between 40 and 60 DAP. Such proteins were not as evident in prematurely dried endosperms. In contrast to the rapid loss of Lea mRNAs during germination, many of the dehydrin proteins abundant in the dried seed persisted following imbibition or rehydration.


Subject(s)
Plant Proteins/genetics , Plants, Toxic , RNA, Messenger , RNA, Plant , Ricinus communis/genetics , Ricinus communis/growth & development , Ricinus communis/metabolism , Seeds
12.
Chem Biol ; 3(9): 747-55, 1996 Sep.
Article in English | MEDLINE | ID: mdl-8939691

ABSTRACT

BACKGROUND: The enzyme aminoglycoside 3'-phosphotransferase Type IIIa (APH(3')-IIIa), confers resistance to many aminoglycoside antibiotics by regiospecific phosphorylation of their hydroxyl groups. The chemical mechanism of phosphoryl transfer is unknown. Based on sequence homology, it has been suggested that a conserved His residue, His188, could be phosphorylated by ATP, and this phospho-His would transfer the phosphate to the incoming aminoglycoside. We have used chemical modification, site-directed mutagenesis and positional isotope exchange methods to probe the mechanism of phosphoryl transfer by APH(3')-IIIa. RESULTS: Chemical modification by diethylpyrocarbonate implicated His in aminoglycoside phosphorylation by APH(3')-IIIa. We prepared His --> Ala mutants of all four His residues in APH(3')-IIIa and found minimal effects of the mutations on the steady-state phosphorylation of several aminoglycosides. One of these mutants, His188Ala, was largely insoluble when compared to the wild-type enzyme. Positional isotope exchange experiments using gamma-[18O]-ATP did not support a double-displacement mechanism. CONCLUSIONS: His residues are not required for aminoglycoside phosphorylation by APH(3')-IIIa. The conserved His 188 is thus not a phosphate accepting residue but does seem to be important for proper enzyme folding. Positional isotope exchange experiments are consistent with direct attack of the aminoglycoside hydroxyl group on the gamma-phosphate of ATP.


Subject(s)
Enterococcus/enzymology , Histidine/metabolism , Phosphates/metabolism , Phosphotransferases (Alcohol Group Acceptor)/metabolism , Staphylococcus/enzymology , Adenosine Triphosphate/metabolism , Blotting, Western , Carbohydrate Sequence , Chemical Phenomena , Chemistry , Cloning, Molecular , Conserved Sequence/genetics , Diethyl Pyrocarbonate/pharmacology , Drug Resistance/genetics , Kanamycin Kinase , Kinetics , Magnetic Resonance Spectroscopy , Molecular Sequence Data , Mutagenesis, Site-Directed/genetics , Oligosaccharides/chemistry , Oligosaccharides/metabolism , Phosphorylation , Phosphotransferases (Alcohol Group Acceptor)/genetics , Protein Folding , Sequence Alignment
13.
Biochemistry ; 35(26): 8686-95, 1996 Jul 02.
Article in English | MEDLINE | ID: mdl-8679631

ABSTRACT

The broad-spectrum aminoglycoside phosphotransferase, APH(3')-IIIa, confers resistance to several aminoglycoside antibiotics in opportunistic pathogens of the genera Staphylococcus and Enterococcus. The profile of the drug resistance phenotype suggested that the enzyme would transfer a phosphate group from ATP to the 3'-hydroxyl of aminoglycosides. In addition, resistance to the 3'-deoxyaminoglycoside antibiotic, lividomycin A, suggested possible transfer to the 5"-hydroxyl of the ribose [Trieu-Cuot, P., & Courvalin, P. (1983) Gene 23, 331-341]. Using purified overexpressed enzyme, we have prepared and purified the products of APH(3')-IIIa-dependent phosphorylation of several of aminoglycoside antibiotics. Mass spectral analysis revealed that 4,6-disubstituted aminocyclitol antibiotics such as amikacin and kanamycin are monophosphorylated, while 4,5-disubstituted aminoglycosides such as butirosin A, ribostamycin, and neomycin B are both mono- and diphosphorylated by APH(3')-IIIa. Using a series of one- and two-dimensional 1H, 13C, and 31P NMR experiments, we have unambiguously assigned the regiospecificity of phosphoryl transfer to several antibiotics. The 4,6-disubstituted aminocyclitol antibiotics are exclusively phosphorylated at the 3'-OH hydroxyl, and the 4,5-disubstituted aminocyclitol antibiotics can be phosphorylated at both the 3'- and 5"-hydroxyls. The first phosphorylation can occur on either the 3'- or 5"-hydroxyl group of neomycin B or butirosin A. Initial phosphotransfer to the 3'-position predominates for butirosin while the 5"-OH is favored for neomycin. These results open the potential for the rational design of aminoglycoside kinase inhibitors based on functionalization of either the 6-aminohexose or the pentose rings of aminoglycoside antibiotics.


Subject(s)
Enterococcus/enzymology , Phosphotransferases (Alcohol Group Acceptor)/metabolism , Staphylococcus/enzymology , Aminoglycosides , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Carbohydrate Sequence , Drug Resistance, Microbial , Kanamycin Kinase , Magnetic Resonance Spectroscopy , Molecular Sequence Data , Phosphorylation , Spectrometry, Mass, Secondary Ion , Substrate Specificity
14.
J R Coll Physicians Lond ; 28(5): 402-6, 1994.
Article in English | MEDLINE | ID: mdl-7807426

ABSTRACT

In order to estimate the impact of a community programme of training in cardiopulmonary resuscitation (CPR), we reviewed all adult deaths in the city of Cardiff (population 292,600) during a 13-week period. Of 701 deaths, 70 were cases of fatal out-of-hospital cardiac arrest due to heart disease, for whom it was felt that CPR might have been of value. Only 34 (48.6%) deaths were witnessed, and in 22 of them the witness did not start CPR. In the majority of cases the ambulance service was not summoned immediately. We calculate that a community CPR training programme may, at best, reduce the community cardiac mortality rate by 7.5%, ie saving between 24 and 56 lives per 100,000 adult population per year; but more realistically, such a programme can only achieve a reduction of 0.4%, ie saving up to six lives per 100,000 per year. Although community CPR training programmes are likely to lead to only a modest reduction in community cardiac mortality rates, because countrywide there are many deaths, the total of lives saved would be significant. Implementation of such programmes should be carefully evaluated.


Subject(s)
Cardiopulmonary Resuscitation/education , First Aid , Heart Arrest/mortality , Adult , Female , Heart Arrest/therapy , Humans , Male , Middle Aged
15.
Planta ; 192(3): 384-94, 1994.
Article in English | MEDLINE | ID: mdl-7764404

ABSTRACT

Cloned mRNAs identify three programs of gene expression in cotton (Gossypium hirsutum L.) embryos that are associated with the maturation (reserve accumulation) stage, the postabscission stage, which is marked by expression of Late-embryogenesis-abundant (Lea) mRNAs, and germination (broadly defined as including all events through early postgerminative growth). In order to test if the regulation of these programs is the same in other dicotyledonous species, their expression was studied in normal and cultured maturation-stage, postabscission-stage, and mature embryo-stage embryos or seed of oilseed rape (Brassica napus L.), soybean (Glycine max [L.] Merr.), and tobacco (Nicotiana tabacum L.) using cotton and other cDNA probes. During postabscission, Lea mRNAs accumulated in all test species and were induced in earlier maturation-stage embryos by excision and culture on basal medium. Abscisic acid often enhanced this induction in the test species. Germination-specific mRNAs were induced in cultured maturation-stage and postabscission-stage embryos of all test species. These results indicate that the regulation of embryonic and germination programs is similar in all dicotyledons tested. Because excised embryos simultaneously induced postabscission and germination programs, the effects of exogenous growth regulators and other factors on such embryos probably reflect stress responses of germinating mature embryos rather than the identity of endogenous regulators of embryogenesis.


Subject(s)
Genes, Plant , RNA, Messenger/biosynthesis , Seeds/metabolism , Abscisic Acid/pharmacology , Brassica/genetics , Culture Techniques , DNA Probes , Embryonic Induction , Gene Expression , Glycine/genetics , Gossypium/genetics , Plant Proteins/genetics , Plants, Toxic , Nicotiana/genetics
16.
J Biomol Struct Dyn ; 11(3): 509-28, 1993 Dec.
Article in English | MEDLINE | ID: mdl-8129870

ABSTRACT

With a view to understanding the structural requirement for tyrosine phosphorylation, we have examined the free and Ca(2+)-bound conformations of the synthetic peptide tBoc-Leu-Pro-Tyr-Ala-NHCH3, a substrate for a protein tyrosine kinase, using circular dichroism (CD), 1H and 13C nuclear magnetic resonance (NMR) and molecular modeling methods. CD spectrum of the free peptide in water showed a random coil structure, while the spectrum in acetonitrile was indicative of a folded structure containing a type III beta-turn. Dihedral angle data derived from JNH-CH coupling constants, as well as two-dimensional 1H-COSY and NOESY spectral analyses, showed that the peptide adopts a conformation close to the 3(10)-helix. Ca2+ binding by the peptide, as monitored by CD spectral changes, was quite weak in water. However, substantial CD spectral changes were observed in the peptide on addition of Ca2+ in acetonitrile suggestive of major conformational alterations due to Ca2+ binding. Analysis of the binding isotherms at 25 degrees C obtained from CD data in acetonitrile indicated a 2:1 peptide:Ca2+ ("sandwich") complex to be the dominant species with a Kd of about 30 microM. A 1:1 complex was also present and became significant at Ca2+:peptide ratios above 1. By comparison, the peptide formed a predominantly 1:1 complex with Mg2+ with a Kd of about 40 microM. 13C-NMR data showed that a mixture of cis and trans conformers (arising from rotation around the Leu-Pro bond) in the free peptide changes over to the all-trans form on coordination of the peptide carbonyl groups to the Ca2+ ion. 1H-NOESY data of the Ca2+ complex revealed several interactions involving the sidechains of two peptide molecules in the sandwich. Molecular modeling and energy minimization with and without the input of NOESY-derived distance constraints showed the sandwich complex to be an energetically very favourable conformation. Besides its relevance in terms of the possible involvement of divalent cations in substrate-tyrosine kinase interaction, the conformational characterization of tBoc-Leu-Pro-Tyr-Ala-NHCH3 and its Ca2+ complex should help understand the conformational determinants for Ca(2+)-binding by linear peptides.


Subject(s)
Calcium/metabolism , Oligopeptides/metabolism , Protein-Tyrosine Kinases/metabolism , Amino Acid Sequence , Binding Sites , Circular Dichroism , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Sequence Data , Monte Carlo Method , Oligopeptides/chemical synthesis , Oligopeptides/chemistry , Protein Conformation , Substrate Specificity
20.
Appl Opt ; 32(30): 5958-61, 1993 Oct 20.
Article in English | MEDLINE | ID: mdl-20856419

ABSTRACT

We report the operation of a laser diode pumped La(1-x)Nd(x)MgAl(11)O(19) laser mode locked by an electro-optic phase modulator. The repetition rate of the laser was 230 MHz, and the average output power was 50 mW, when pumped by a 500-mW broad-stripe laser diode. Transform-limited pulses of 14 ps duration were obtained. We have also demonstrated the FM operation of this laser, with bandwidths of up to 440 GHz being obtained.

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